Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

24038694 .. 24040885

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1274100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTCATCCTTCGGGTTTTGGGTGGAAGAACTTGGTGTGTCAAATTCGAACAATATGACACCGGAAGATTGCAGATTGCTGGGAGGTTGGAAGCAATTTGTGCGAGAGAACAGTTTGGCAATTGGCGATGAGTCCTGTTGGATTGGATTTGTGCGACCTCCACGACAACCCAGTTGGTCCTGTTTGAGATTGGCAGAGACAATGGAAAAAAGACAGATTCCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

76

Amino Acids

8.66

Weight (kDa)

6.19

Isoelectric Point (pI)

68.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	5
BstMAI	GTCTC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	177
FaiI	YATR	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	83
HapII	CCGG	1 cut(s)	62
HinfI	GANTC	2 cut(s)	131, 217
HpaII	CCGG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	65, 75, 148, 184, 193
MboII	GAAGA	2 cut(s)	38, 77
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	3 cut(s)	43, 95, 120
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	68, 119
MnlI	CCTC	2 cut(s)	77, 168
MspI	CCGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	140
SetI	ASST	2 cut(s)	88, 160
SfuI	TTCGAA	1 cut(s)	47
SgeI	CNNG	9 cut(s)	25, 44, 74, 92, 116, 147, 174, 183, 192
SinI	GGWCC	1 cut(s)	177
Sse9I	AATT	3 cut(s)	43, 95, 120
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	43, 95, 120
TfiI	GAWTC	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.