B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 15 - 105 | 8e-16 | B3 DNA binding domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 252 |
| AcoI | YGGCCR | 1 cut(s) | 14 |
| AcsI | RAATTY | 3 cut(s) | 87, 98, 283 |
| AflII | CTTAAG | 1 cut(s) | 143 |
| AgsI | TTSAA | 5 cut(s) | 49, 209, 232, 365, 383 |
| AhlI | ACTAGT | 1 cut(s) | 479 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 457, 489 |
| AluBI | AGCT | 2 cut(s) | 148, 551 |
| AluI | AGCT | 2 cut(s) | 148, 551 |
| Alw26I | GTCTC | 3 cut(s) | 111, 320, 414 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 329 |
| AoxI | GGCC | 2 cut(s) | 14, 446 |
| ApoI | RAATTY | 3 cut(s) | 87, 98, 283 |
| AsuHPI | GGTGA | 2 cut(s) | 206, 426 |
| AsuII | TTCGAA | 1 cut(s) | 294 |
| BanII | GRGCYC | 1 cut(s) | 565 |
| BccI | CCATC | 5 cut(s) | 185, 347, 439, 445, 524 |
| BcoDI | GTCTC | 3 cut(s) | 111, 320, 414 |
| BcuI | ACTAGT | 1 cut(s) | 479 |
| BfaI | CTAG | 5 cut(s) | 72, 245, 444, 480, 519 |
| BfrI | CTTAAG | 1 cut(s) | 143 |
| BoxI | GACNNNNGTC | 1 cut(s) | 252 |
| Bpu14I | TTCGAA | 1 cut(s) | 294 |
| BpuEI | CTTGAG | 1 cut(s) | 575 |
| Bsa29I | ATCGAT | 1 cut(s) | 348 |
| BsaJI | CCNNGG | 1 cut(s) | 277 |
| BseCI | ATCGAT | 1 cut(s) | 348 |
| BseDI | CCNNGG | 1 cut(s) | 277 |
| BseGI | GGATG | 1 cut(s) | 397 |
| BshFI | GGCC | 2 cut(s) | 16, 448 |
| BshVI | ATCGAT | 1 cut(s) | 348 |
| BsmAI | GTCTC | 3 cut(s) | 111, 320, 414 |
| BsnI | GGCC | 2 cut(s) | 16, 448 |
| Bsp119I | TTCGAA | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 565 |
| BspACI | CCGC | 1 cut(s) | 252 |
| BspANI | GGCC | 2 cut(s) | 16, 448 |
| BspDI | ATCGAT | 1 cut(s) | 348 |
| BspT104I | TTCGAA | 1 cut(s) | 294 |
| BspTI | CTTAAG | 1 cut(s) | 143 |
| BssECI | CCNNGG | 1 cut(s) | 277 |
| BssT1I | CCWWGG | 1 cut(s) | 277 |
| Bst6I | CTCTTC | 1 cut(s) | 501 |
| BstAFI | CTTAAG | 1 cut(s) | 143 |
| BstBI | TTCGAA | 1 cut(s) | 294 |
| BstC8I | GCNNGC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 1 cut(s) | 470 |
| BstF5I | GGATG | 1 cut(s) | 397 |
| BstMAI | GTCTC | 3 cut(s) | 111, 320, 414 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 145 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 252 |
| Bsu15I | ATCGAT | 1 cut(s) | 348 |
| BsuRI | GGCC | 2 cut(s) | 16, 448 |
| BsuTUI | ATCGAT | 1 cut(s) | 348 |
| BtgZI | GCGATG | 1 cut(s) | 204 |
| BtsCI | GGATG | 1 cut(s) | 397 |
| BtsIMutI | CAGTG | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 1 cut(s) | 561 |
| CaiI | CAGNNNCTG | 1 cut(s) | 329 |
| ClaI | ATCGAT | 1 cut(s) | 348 |
| CseI | GACGC | 1 cut(s) | 128 |
| CviJI | RGCY | 8 cut(s) | 16, 148, 200, 448, 488, 540, 551, 563 |
| CviKI_1 | RGCY | 8 cut(s) | 16, 148, 200, 448, 488, 540, 551, 563 |
| DdeI | CTNAG | 1 cut(s) | 470 |
| EaeI | YGGCCR | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 1 cut(s) | 501 |
| EarI | CTCTTC | 1 cut(s) | 501 |
| Eco130I | CCWWGG | 1 cut(s) | 277 |
| Eco147I | AGGCCT | 1 cut(s) | 448 |
| Eco24I | GRGCYC | 1 cut(s) | 565 |
| EcoRI | GAATTC | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 277 |
| EcoT38I | GRGCYC | 1 cut(s) | 565 |
| ErhI | CCWWGG | 1 cut(s) | 277 |
| FaiI | YATR | 7 cut(s) | 114, 274, 290, 305, 360, 571, 577 |
| FokI | GGATG | 1 cut(s) | 404 |
| FriOI | GRGCYC | 1 cut(s) | 565 |
| FspBI | CTAG | 5 cut(s) | 72, 245, 444, 480, 519 |
| HaeIII | GGCC | 2 cut(s) | 16, 448 |
| HgaI | GACGC | 1 cut(s) | 128 |
| HindIII | AAGCTT | 1 cut(s) | 146 |
| HinfI | GANTC | 2 cut(s) | 75, 353 |
| HphI | GGTGA | 2 cut(s) | 206, 426 |
| Hpy188III | TCNNGA | 4 cut(s) | 72, 245, 453, 554 |
| HpyAV | CCTTC | 1 cut(s) | 459 |
| HpyCH4V | TGCA | 2 cut(s) | 303, 320 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 145 |
| HpyF3I | CTNAG | 1 cut(s) | 470 |
| LpnPI | CCDG | 2 cut(s) | 418, 466 |
| MaeI | CTAG | 5 cut(s) | 72, 245, 444, 480, 519 |
| MaeIII | GTNAC | 2 cut(s) | 178, 254 |
| MboII | GAAGA | 4 cut(s) | 220, 377, 468, 518 |
| MhlI | GDGCHC | 1 cut(s) | 565 |
| MluCI | AATT | 3 cut(s) | 87, 98, 283 |
| MlyI | GAGTC | 1 cut(s) | 347 |
| MmeI | TCCRAC | 1 cut(s) | 500 |
| MnlI | CCTC | 5 cut(s) | 55, 99, 190, 502, 530 |
| MseI | TTAA | 1 cut(s) | 144 |
| MspCI | CTTAAG | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 145 |
| NmuCI | GTSAC | 2 cut(s) | 178, 254 |
| NspV | TTCGAA | 1 cut(s) | 294 |
| PceI | AGGCCT | 1 cut(s) | 448 |
| PfeI | GAWTC | 1 cut(s) | 75 |
| PleI | GAGTC | 1 cut(s) | 347 |
| PpsI | GAGTC | 1 cut(s) | 347 |
| PshAI | GACNNNNGTC | 1 cut(s) | 252 |
| PstNI | CAGNNNCTG | 1 cut(s) | 329 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SchI | GAGTC | 1 cut(s) | 347 |
| SduI | GDGCHC | 1 cut(s) | 565 |
| SetI | ASST | 3 cut(s) | 54, 150, 553 |
| SfuI | TTCGAA | 1 cut(s) | 294 |
| SmlI | CTYRAG | 2 cut(s) | 143, 554 |
| SmoI | CTYRAG | 2 cut(s) | 143, 554 |
| SpeI | ACTAGT | 1 cut(s) | 479 |
| Sse9I | AATT | 3 cut(s) | 87, 98, 283 |
| SseBI | AGGCCT | 1 cut(s) | 448 |
| SsiI | CCGC | 1 cut(s) | 252 |
| SspMI | CTAG | 5 cut(s) | 72, 245, 444, 480, 519 |
| StuI | AGGCCT | 1 cut(s) | 448 |
| StyI | CCWWGG | 1 cut(s) | 277 |
| TaqI | TCGA | 2 cut(s) | 294, 348 |
| TasI | AATT | 3 cut(s) | 87, 98, 283 |
| TfiI | GAWTC | 1 cut(s) | 75 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TscAI | CASTG | 1 cut(s) | 141 |
| TseFI | GTSAC | 2 cut(s) | 178, 254 |
| Tsp45I | GTSAC | 2 cut(s) | 178, 254 |
| TspRI | CASTG | 1 cut(s) | 141 |
| Vha464I | CTTAAG | 1 cut(s) | 143 |
| XapI | RAATTY | 3 cut(s) | 87, 98, 283 |
| XbaI | TCTAGA | 2 cut(s) | 71, 244 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 385 |
| XspI | CTAG | 5 cut(s) | 72, 245, 444, 480, 519 |