Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

71047841 .. 71050313

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG505000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTCCAGAAAGCTCTTGAAGTTGAGCAATGGCTTCTCTTCGCCCTCTGAGATTTGTTCTACCACTCCCCATTTTTTCAAGATCATTCTGGAGGACACTTCTCGACACAAACTTAAAATTCTGAAGAAATTTGTGATGAAATATGGTAAAGATCTGTCAAATTCAGTATTTCTTAAGCTCCCAAGTGGTTCTGAATGGGAAGTAGAATTAACAAGACCTTTGCTTGGTTTGAGAAGGGTTGGCCAGAGGAATTCTCATTTTGATGTTTGCATATTTGATGTGAGTGCCACGGAGATTGATTATCCCATGACAATGCCCAAGATTGAAGAAGCTGATGAAGATGATGACTTATCTATTGAAATCTTGGAGGGTTTTCAACCTAGTCCTAAAACAAGAAGGAAATGTCCATTAGCTTGTCCTCCTTACAAGAAAATGAGAGCAAGTTTGAGCGGCAAAGCAGACGTGAGTTCTGAAATTGAGAACACTCAACCTTGTGACATGTTCGAGAAGCCAATCACAAACAAAGAGTCACATCGCAATAAAGTAGAAGTGGAAAATCTGGAAAATAAAGAGAAAGATGGCAGAGTCCTTGGAGGCTTATCTGGCACTCAAAGGTTCCTAAAGAAAACATCTCACAAGGTTGTTGGCAACGGTCTAGCTCTTCATAGAGCTTATGATTTCAAAACTGAAAACCCTTCATTCGTTGTTTCCCTGCAGCCCTCGGATATACAAAGTTCTTTGTCTTTGTTATTGGAGTTTTCCAGAAGACATCTCATTAAGCTGCCTGCAAGTAACATTACCCTTAGAGTTTTGGATGGAAGAATATGGTCTGTTGAATTCACATATACTAAAGAGAAAGCCCAATTCCAGGGTGGCTGGTTGACATTTGTGAAGGACAATAATTTGGAAGTTGGCGATGTGTGTGTCTTTGTCTTGATTAAGGACATCAAGCTTTTATTAGGTGTTTTGTTTTTCCGCACTTCAGAAGCTACAACTTGGTTCTTGTCTAATGGGGAAAATTTTTTTCTGACTGAAAGAGATGGTGGAAGCTCTGCTAGTTCTCAAACAATCCTAAAGCGAACACATGAGGTTGTTGCAAGGGTGAAGCCATTGACTGCAACTGAGAAAGCTAATGCCTTCAAATTTGATAAACCTTCTTTTAGGATTGCCATGCATCCTTATTCTATCCATTATAATAATGTGTATTTGCCAAATGAATTTGCCAAGACATATCTTACGAAGCTGTCTTCTGGAGTAGCCATCCTTCAAGTTTCAGATGGAAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

429

Amino Acids

48.56

Weight (kDa)

9.13

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	235 - 322	8.2e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1194
AccBSI	CCGCTC	1 cut(s)	450
AciI	CCGC	2 cut(s)	450, 976
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	8 cut(s)	117, 128, 160, 250, 836, 1018, 1142, 1217
AcuI	CTGAAG	2 cut(s)	143, 966
AfiI	CCNNNNNNNGG	2 cut(s)	224, 868
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	9 cut(s)	19, 79, 326, 359, 377, 682, 836, 1141, 1268
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	867
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	715, 781
ApoI	RAATTY	8 cut(s)	117, 128, 160, 250, 836, 1018, 1142, 1217
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AsuHPI	GGTGA	1 cut(s)	1114
BalI	TGGCCA	1 cut(s)	243
BarI	GAAGNNNNNNTAC	2 cut(s)	1248, 1280
BbsI	GAAGAC	2 cut(s)	772, 1239
BbvI	GCAGC	2 cut(s)	727, 768
BccI	CCATC	5 cut(s)	572, 809, 1034, 1268, 1271
BciT130I	CCWGG	1 cut(s)	869
BfaI	CTAG	3 cut(s)	381, 656, 1056
BfmI	CTRYAG	1 cut(s)	713
BfrI	CTTAAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	3 cut(s)	451, 716, 782
BlsI	GCNGC	3 cut(s)	452, 717, 783
Bme1390I	CCNGG	1 cut(s)	869
BmgBI	CACGTC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	1 cut(s)	869
BmsI	GCATC	1 cut(s)	1183
BpiI	GAAGAC	2 cut(s)	772, 1239
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpmI	CTGGAG	2 cut(s)	110, 1272
BsaJI	CCNNGG	4 cut(s)	288, 589, 720, 868
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 868
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	869
BseDI	CCNNGG	4 cut(s)	288, 589, 720, 868
BseGI	GGATG	3 cut(s)	820, 1174, 1260
BseLI	CCNNNNNNNGG	2 cut(s)	224, 868
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	39, 1113
BseXI	GCAGC	2 cut(s)	727, 768
BshFI	GGCC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	224, 868
BsnI	GGCC	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	81, 151
BspACI	CCGC	2 cut(s)	450, 976
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	40, 1114
BspLI	GGNNCC	1 cut(s)	617
BspMAI	CTGCAG	1 cut(s)	717
BspQI	GCTCTTC	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	288, 589, 720, 868
BssMI	GATC	2 cut(s)	81, 151
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	869
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	2 cut(s)	43, 666
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	3 cut(s)	48, 803, 1122
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	820, 1174, 1260
BstKTI	GATC	2 cut(s)	84, 154
BstMBI	GATC	2 cut(s)	81, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstNI	CCWGG	1 cut(s)	869
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	867
BstSFI	CTRYAG	1 cut(s)	713
BstV1I	GCAGC	2 cut(s)	727, 768
BstV2I	GAAGAC	2 cut(s)	772, 1239
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	288
BtgZI	GCGATG	2 cut(s)	518, 930
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	820, 1174, 1260
Cac8I	GCNNGC	1 cut(s)	786
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	307, 499, 1085, 1171
DdeI	CTNAG	3 cut(s)	48, 803, 1122
DpnI	GATC	2 cut(s)	83, 153
DpnII	GATC	2 cut(s)	81, 151
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	43, 666
EarI	CTCTTC	2 cut(s)	43, 666
Eco130I	CCWWGG	1 cut(s)	589
Eco57I	CTGAAG	2 cut(s)	143, 966
EcoRI	GAATTC	2 cut(s)	250, 836
EcoRII	CCWGG	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	589
EcoT22I	ATGCAT	1 cut(s)	1176
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	4 cut(s)	310, 502, 1088, 1174
FatI	CATG	4 cut(s)	306, 498, 1084, 1170
Fnu4HI	GCNGC	3 cut(s)	451, 716, 782
FokI	GGATG	3 cut(s)	827, 1161, 1247
Fsp4HI	GCNGC	3 cut(s)	451, 716, 782
FspBI	CTAG	3 cut(s)	381, 656, 1056
GluI	GCNGC	3 cut(s)	451, 716, 782
GsuI	CTGGAG	2 cut(s)	110, 1272
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	310, 502, 1088, 1174
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	2 cut(s)	527, 585
HphI	GGTGA	1 cut(s)	1114
Hpy166II	GTNNAC	1 cut(s)	882
Hpy188I	TCNGA	8 cut(s)	49, 123, 193, 472, 724, 985, 1029, 1276
Hpy8I	GTNNAC	1 cut(s)	882
HpyAV	CCTTC	7 cut(s)	228, 390, 705, 886, 1147, 1164, 1274
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	6 cut(s)	270, 715, 788, 1097, 1118, 1174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpyF3I	CTNAG	3 cut(s)	48, 803, 1122
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	310, 502, 1088, 1174
Kzo9I	GATC	2 cut(s)	81, 151
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	1 cut(s)	183
Lsp1109I	GCAGC	2 cut(s)	727, 768
LweI	GCATC	1 cut(s)	1183
MaeI	CTAG	3 cut(s)	381, 656, 1056
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	494, 528, 791
MalI	GATC	2 cut(s)	83, 153
MbiI	CCGCTC	1 cut(s)	450
MboI	GATC	2 cut(s)	81, 151
MboII	GAAGA	8 cut(s)	30, 136, 338, 350, 653, 777, 831, 1239
MflI	RGATCY	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	243
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	536, 594
MnlI	CCTC	8 cut(s)	55, 85, 240, 361, 429, 587, 730, 1081
Mox20I	TGGCCA	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	1176
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	5 cut(s)	114, 174, 209, 777, 939
MslI	CAYNNNNRTG	2 cut(s)	261, 311
Msp20I	TGGCCA	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	869
MwoI	GCNNNNNNNGC	1 cut(s)	603
NdeII	GATC	2 cut(s)	81, 151
NlaIII	CATG	4 cut(s)	310, 502, 1088, 1174
NlaIV	GGNNCC	1 cut(s)	617
NmuCI	GTSAC	2 cut(s)	494, 528
NsiI	ATGCAT	1 cut(s)	1176
NspI	RCATGY	1 cut(s)	502
PciI	ACATGT	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	666
PkrI	GCNGC	3 cut(s)	452, 717, 783
PleI	GAGTC	2 cut(s)	535, 593
PpsI	GAGTC	2 cut(s)	535, 593
PscI	ACATGT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	1194
Psp6I	CCWGG	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	867
PspN4I	GGNNCC	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	717
PsuI	RGATCY	1 cut(s)	151
RseI	CAYNNNNRTG	2 cut(s)	261, 311
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	114, 174, 209, 777, 939
SatI	GCNGC	3 cut(s)	451, 716, 782
Sau3AI	GATC	2 cut(s)	81, 151
SchI	GAGTC	2 cut(s)	536, 594
ScrFI	CCNGG	1 cut(s)	869
SfaNI	GCATC	1 cut(s)	1183
SfcI	CTRYAG	1 cut(s)	713
SmiMI	CAYNNNNRTG	2 cut(s)	261, 311
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	2 cut(s)	450, 976
SspMI	CTAG	3 cut(s)	381, 656, 1056
StyD4I	CCNGG	1 cut(s)	867
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	103, 504
TauI	GCSGC	1 cut(s)	453
Tru1I	TTAA	5 cut(s)	114, 174, 209, 777, 939
Tru9I	TTAA	5 cut(s)	114, 174, 209, 777, 939
TseFI	GTSAC	2 cut(s)	494, 528
TseI	GCWGC	2 cut(s)	715, 781
Tsp45I	GTSAC	2 cut(s)	494, 528
TspDTI	ATGAA	5 cut(s)	152, 351, 653, 687, 1230
TspGWI	ACGGA	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	173
XapI	RAATTY	8 cut(s)	117, 128, 160, 250, 836, 1018, 1142, 1217
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	869
XspI	CTAG	3 cut(s)	381, 656, 1056
Zsp2I	ATGCAT	1 cut(s)	1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.