Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

9848398 .. 9851258

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGTCTCTTTCTGCAATTTCTCCTCACACTGAAAGACGTGAAATTTCATGGCTGCAAATTTGAAACCCAGAGCAGCATCTTCAGACTAAAAGACATGGTTTTCTTGAGCTGGGCTCCCCCAACTCCTAAGGAACAAAAGGCTTGCATTGACAGGTCAGGTGGCTTTAACTATGAAGCTAAGTTCAGGGGAGCTACTGCTAAGTCCTTATCTTCCCTGCAAGAAGATAAGGGCCTCTCAGAAAATGGTTTCTTATGCAACCATGCCCGTGTTTTGGTCGGTTCGGGTTTGGAGACTTATGAGAAGGGCAAGAGGGCTCTTCAGGATTGGAGGCATTTTGGATTGAATTGGGCGTTTGTTGATCCGAAGACGCCGGTTCAAAATGGAGTGAAGTTTTGTGTTTGTGTCAAGGAGTTTCTGCCATGGGTCATGATGCCTCTTCAGATAGTGTATGTGAATGAGAATAGAAGTAGTAAAGAGTCCATGGCGTCTTTTCGTTTTGGGGGTGGTACTCTTCAAGGTCACTTGCTGGCTGGGGAGGAACGTTTCTCAATTGAACTGGATGAGTACAACCAAGTGTGGTATGAGATACTTTCCTTCTCAAAACCAGCTCACCTATTGTCATTTGTTGGGTACCCATATGTAATGCTCAGGCAAAGGTATTTTGCTCATCATTCTACTAATGCAATCAAGAAACATTTGAAAGCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

237

Amino Acids

27.15

Weight (kDa)

9.22

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1990	PF09348	80 - 228	2.2e-37	Domain of unknown function (DUF1990)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	633
AclI	AACGTT	1 cut(s)	544
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	2 cut(s)	44, 59
AcuI	CTGAAG	3 cut(s)	67, 305, 425
AcyI	GRCGYC	2 cut(s)	371, 488
AfaI	GTAC	3 cut(s)	511, 569, 635
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	6 cut(s)	65, 346, 380, 518, 557, 703
AjiI	CACGTC	1 cut(s)	40
AluBI	AGCT	4 cut(s)	111, 179, 194, 611
AluI	AGCT	4 cut(s)	111, 179, 194, 611
Alw26I	GTCTC	2 cut(s)	11, 287
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	54, 75
ApoI	RAATTY	2 cut(s)	44, 59
Asp718I	GGTACC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	605
AxyI	CCTNAGG	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	2 cut(s)	118, 319
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	41, 87
BcoDI	GTCTC	2 cut(s)	11, 287
BisI	GCNGC	2 cut(s)	55, 76
BlsI	GCNGC	2 cut(s)	56, 77
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	117, 635
BmsI	GCATC	2 cut(s)	87, 423
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	127
BsaHI	GRCGYC	2 cut(s)	371, 488
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	422, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	564
Bse21I	CCTNAGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	422, 483
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	252, 664
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	41, 87
BseYI	CCCAGC	2 cut(s)	111, 533
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	11, 287
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	118, 319
Bsp143I	GATC	1 cut(s)	361
Bsp19I	CCATGG	2 cut(s)	422, 483
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	251, 663
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	117, 635
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	633
BspTNI	GGTCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	422, 483
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	2 cut(s)	371, 488
BssT1I	CCWWGG	2 cut(s)	422, 483
Bst6I	CTCTTC	3 cut(s)	324, 444, 519
BstACI	GRCGYC	2 cut(s)	371, 488
BstC8I	GCNNGC	2 cut(s)	145, 531
BstDEI	CTNAG	5 cut(s)	129, 180, 201, 238, 650
BstDSI	CCRYGG	2 cut(s)	422, 483
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	2 cut(s)	11, 287
BstMBI	GATC	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	41, 87
BstV2I	GAAGAC	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	234
BtgI	CCRYGG	2 cut(s)	422, 483
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	145, 531
CciI	TCATGA	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	2 cut(s)	379, 477
Csp6I	GTAC	3 cut(s)	510, 568, 634
CviAII	CATG	6 cut(s)	50, 97, 263, 423, 430, 484
CviQI	GTAC	3 cut(s)	510, 568, 634
DdeI	CTNAG	5 cut(s)	129, 180, 201, 238, 650
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
Eam1104I	CTCTTC	3 cut(s)	324, 444, 519
EarI	CTCTTC	3 cut(s)	324, 444, 519
Eco130I	CCWWGG	2 cut(s)	422, 483
Eco24I	GRGCYC	2 cut(s)	118, 319
Eco31I	GGTCTC	1 cut(s)	11
Eco57I	CTGAAG	3 cut(s)	67, 305, 425
Eco81I	CCTNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	422, 483
EcoT38I	GRGCYC	2 cut(s)	118, 319
ErhI	CCWWGG	2 cut(s)	422, 483
FaeI	CATG	6 cut(s)	53, 100, 266, 426, 433, 487
FatI	CATG	6 cut(s)	49, 96, 262, 422, 429, 483
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	2 cut(s)	55, 76
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	2 cut(s)	118, 319
Fsp4HI	GCNGC	2 cut(s)	55, 76
GluI	GCNGC	2 cut(s)	55, 76
GsaI	CCCAGC	2 cut(s)	115, 537
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	2 cut(s)	379, 477
Hin1I	GRCGYC	2 cut(s)	371, 488
Hin1II	CATG	6 cut(s)	53, 100, 266, 426, 433, 487
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	605
Hpy188I	TCNGA	4 cut(s)	86, 241, 366, 444
Hpy188III	TCNNGA	4 cut(s)	106, 323, 430, 691
HpyAV	CCTTC	2 cut(s)	298, 607
HpyCH4IV	ACGT	2 cut(s)	39, 544
HpyCH4V	TGCA	6 cut(s)	16, 57, 147, 220, 258, 686
HpyF3I	CTNAG	5 cut(s)	129, 180, 201, 238, 650
HpySE526I	ACGT	2 cut(s)	39, 544
Hsp92I	GRCGYC	2 cut(s)	371, 488
Hsp92II	CATG	6 cut(s)	53, 100, 266, 426, 433, 487
KpnI	GGTACC	1 cut(s)	637
Kzo9I	GATC	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	2 cut(s)	121, 191
Lsp1109I	GCAGC	2 cut(s)	41, 87
LweI	GCATC	2 cut(s)	87, 423
MaeII	ACGT	2 cut(s)	39, 544
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	7 cut(s)	73, 204, 236, 311, 379, 431, 506
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	2 cut(s)	118, 319
MluCI	AATT	5 cut(s)	17, 44, 59, 346, 552
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	6 cut(s)	35, 245, 306, 324, 447, 532
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	552
NcoI	CCATGG	2 cut(s)	422, 483
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	6 cut(s)	53, 100, 266, 426, 433, 487
NlaIV	GGNNCC	2 cut(s)	117, 635
NmuCI	GTSAC	1 cut(s)	521
PagI	TCATGA	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	56, 77
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	544
PspFI	CCCAGC	2 cut(s)	111, 533
PspN4I	GGNNCC	2 cut(s)	117, 635
PspPI	GGNCC	1 cut(s)	232
RsaI	GTAC	3 cut(s)	511, 569, 635
RsaNI	GTAC	3 cut(s)	510, 568, 634
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	55, 76
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	488
SduI	GDGCHC	2 cut(s)	118, 319
SfaNI	GCATC	2 cut(s)	87, 423
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	5 cut(s)	17, 44, 59, 346, 552
StyI	CCWWGG	2 cut(s)	422, 483
TaiI	ACGT	2 cut(s)	42, 547
TasI	AATT	5 cut(s)	17, 44, 59, 346, 552
TatI	WGTACW	1 cut(s)	567
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	54, 75
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	38, 189
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	44, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.