MD02G1160300.v1.1

B3 domain-containing

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
13463024 .. 13465088
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1160300.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGCTTCTCTTCTTCCGGAAACTGATCGTGCACGGCCAACATTTTCGGCTACCACTCCACATTTTTTCAAGATCATTCCGAATGAAGCTTCTAGATACACAAAACTTAGGATTCCGGAGAAATTTGTGAATAAATATGGAGAAAATATATCAAATCCAATACTTCTTAAGCTTCCAAGTGGTGTAGAATGGGAAATCCAAGTAAGAACTTGTAATGGTGACATTTGGTTTGACAAGGGTTGGCCGGAATTCTCTGAGTTTTACTCTCTTGATTATGGAGACTCTCTAGTTTTCCGCTACGAAGGGAATTCCAAATTTCATGTTTGCATATTTGATAGAAGTGCCACGGAGATTGAGTATCCGTTACCATTTCCGGAGGTGGAAGAAAGTGATGAAGATGATGATGAATCCTTCAAGGTTTTGGAGGATTTTCCACCCTGCCCAAGAACAAGACAGAAATCTCCGTTGCCATGTCCTCTGCCTCGCATGAAAAAGAGAATAAGCACTTCTTCAAGTAAAAAATTCGGAAACAAAAGCTCTTCAAGGAGGCATCCATTGACCAAAAATGAAAAATCTATAGCTCTTCAGAGATGCATTGATTTCAAATCTGAAAAGCCTCACTTCAAGGTTGTGATGCAGCCCTCCTACATATTCCATAATTTGCCAACTGGTAGTGCCATCCTTTGTGTTCCGGATGGAGGAACTTGGCGTGTTAAATTCACATATGCAAACCAAATATCTCGGTTCTTGTGTGGTTGGCTGGCGTTTGTAGGAGATAATGATTTGAGAGTCGGTGATGTGTGTGTCTTTATCTTGATTAAGGACATTCCGCTCTCGTTTGAAGTTGTCTTTTACCGTGGCAAGTGCAAAATGGGGAAGATTAATGGCCGGCATGTTAGTCAGAGGCCTTGCACTTCATCTTTGAGTGCTTCTGAAGTTGCCAACATGTCAAAGATTTCTAATCAGGTTACCCAAAGGCCTTCATGTTTGAAGGCTTCAAGGGTTCTTGAAGCTGCTAACAAGTTCATCACAAAAAATCCTTTCTTTAGAGCCACTGTGCGGCCACCATCCAAGCTAATGCATGTACCAGCCGAGTTTGCCAAGAGATTAAAATTACAAAAGAAGCAAATTGCAGCTCTTCGGGTCGGAGAGCAATTGTGGCCTGTTAATATAATTGGTTACAACAACGAGGGAAGCAGACATTCGCACATTTCTGGTGGGTGGCGTGTATTTGCAGAGGAAAATCGTTTGAGAGAAGGAGATGTATGCACATTTGAGCTGGTCGAGATAAATGACATTGTGCTGAAAGTTCATATTTTCAGAAGTTGA

Protein Analysis

443

Amino Acids

50.58

Weight (kDa)

9.28

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 22 - 113 5.6e-16 B3 DNA binding domain
B3 PF02362 223 - 282 9e-08 B3 DNA binding domain
B3 PF02362 358 - 441 4.6e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 832
AccIII TCCGGA 4 cut(s) 16, 115, 373, 691
AciI CCGC 3 cut(s) 295, 830, 1060
AcoI YGGCCR 4 cut(s) 35, 242, 886, 1061
AcsI RAATTY 6 cut(s) 122, 248, 307, 314, 521, 716
AcuI CTGAAG 2 cut(s) 569, 954
AfaI GTAC 1 cut(s) 1086
AfiI CCNNNNNNNGG 2 cut(s) 698, 1059
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 945
AluBI AGCT 8 cut(s) 89, 172, 537, 581, 1013, 1075, 1136, 1279
AluI AGCT 8 cut(s) 89, 172, 537, 581, 1013, 1075, 1136, 1279
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 273
Alw44I GTGCAC 1 cut(s) 30
Aor13HI TCCGGA 4 cut(s) 16, 115, 373, 691
AoxI GGCC 7 cut(s) 35, 242, 886, 905, 977, 1061, 1160
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 637, 1013, 1133
ApoI RAATTY 6 cut(s) 122, 248, 307, 314, 521, 716
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AseI ATTAAT 1 cut(s) 882
AsuHPI GGTGA 2 cut(s) 230, 806
BaeGI GKGCMC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 649, 1000, 1145
BccI CCATC 3 cut(s) 686, 689, 1075
BceAI ACGGC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 2 cut(s) 93, 287
BfmI CTRYAG 1 cut(s) 576
BfrI CTTAAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 369
BisI GCNGC 4 cut(s) 638, 1014, 1061, 1134
BlsI GCNGC 4 cut(s) 639, 1015, 1062, 1135
BmsI GCATC 3 cut(s) 559, 581, 624
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BsaJI CCNNGG 2 cut(s) 345, 856
BsaWI WCCGGW 4 cut(s) 16, 115, 373, 691
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 698, 1059
Bse118I RCCGGY 1 cut(s) 888
Bse1I ACTGG 1 cut(s) 673
BseAI TCCGGA 4 cut(s) 16, 115, 373, 691
BseDI CCNNGG 2 cut(s) 345, 856
BseGI GGATG 4 cut(s) 550, 678, 700, 1067
BseLI CCNNNNNNNGG 2 cut(s) 698, 1059
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 673
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 3 cut(s) 649, 1000, 1145
BshFI GGCC 7 cut(s) 37, 244, 888, 907, 979, 1063, 1162
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 6 cut(s) 17, 116, 245, 374, 692, 889
BslI CCNNNNNNNGG 2 cut(s) 698, 1059
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 7 cut(s) 37, 244, 888, 907, 979, 1063, 1162
Bsp1286I GDGCHC 1 cut(s) 34
Bsp13I TCCGGA 4 cut(s) 16, 115, 373, 691
Bsp143I GATC 2 cut(s) 25, 72
BspACI CCGC 3 cut(s) 295, 830, 1060
BspANI GGCC 7 cut(s) 37, 244, 888, 907, 979, 1063, 1162
BspCNI CTCAG 1 cut(s) 247
BspEI TCCGGA 4 cut(s) 16, 115, 373, 691
BspQI GCTCTTC 3 cut(s) 544, 588, 1143
BspTI CTTAAG 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 832
BsrFI RCCGGY 1 cut(s) 888
BsrI ACTGG 1 cut(s) 673
BssAI RCCGGY 1 cut(s) 888
BssECI CCNNGG 2 cut(s) 345, 856
BssMI GATC 2 cut(s) 25, 72
Bst4CI ACNGT 2 cut(s) 857, 1057
Bst6I CTCTTC 4 cut(s) 15, 544, 588, 1143
BstAFI CTTAAG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 762, 890
BstDEI CTNAG 2 cut(s) 107, 255
BstDSI CCRYGG 2 cut(s) 345, 856
BstEII GGTNACC 1 cut(s) 967
BstF5I GGATG 4 cut(s) 550, 678, 700, 1067
BstKTI GATC 2 cut(s) 28, 75
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 25, 72
BstMWI GCNNNNNNNGC 2 cut(s) 1097, 1159
BstNSI RCATGY 3 cut(s) 896, 949, 1085
BstPI GGTNACC 1 cut(s) 967
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 649, 1000, 1145
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 7 cut(s) 37, 244, 888, 907, 979, 1063, 1162
BtgI CCRYGG 2 cut(s) 345, 856
BtsCI GGATG 4 cut(s) 550, 678, 700, 1067
BtsIMutI CAGTG 1 cut(s) 1053
Cac8I GCNNGC 2 cut(s) 762, 890
Cfr10I RCCGGY 1 cut(s) 888
Csp6I GTAC 1 cut(s) 1085
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 7 cut(s) 320, 471, 487, 893, 946, 984, 1082
CviQI GTAC 1 cut(s) 1085
DdeI CTNAG 2 cut(s) 107, 255
DpnI GATC 2 cut(s) 27, 74
DpnII GATC 2 cut(s) 25, 72
EaeI YGGCCR 4 cut(s) 35, 242, 886, 1061
Eam1104I CTCTTC 4 cut(s) 15, 544, 588, 1143
EarI CTCTTC 4 cut(s) 15, 544, 588, 1143
Eco147I AGGCCT 2 cut(s) 907, 979
Eco57I CTGAAG 2 cut(s) 569, 954
Eco91I GGTNACC 1 cut(s) 967
EcoO65I GGTNACC 1 cut(s) 967
EcoRI GAATTC 2 cut(s) 248, 307
EcoT22I ATGCAT 2 cut(s) 596, 1083
FaeI CATG 7 cut(s) 323, 474, 490, 896, 949, 987, 1085
FalI AAGNNNNNCTT 4 cut(s) 493, 525, 605, 637
FatI CATG 7 cut(s) 319, 470, 486, 892, 945, 983, 1081
FauNDI CATATG 1 cut(s) 724
Fnu4HI GCNGC 4 cut(s) 638, 1014, 1061, 1134
FokI GGATG 4 cut(s) 537, 665, 707, 1054
Fsp4HI GCNGC 4 cut(s) 638, 1014, 1061, 1134
FspBI CTAG 2 cut(s) 93, 287
GluI GCNGC 4 cut(s) 638, 1014, 1061, 1134
HaeIII GGCC 7 cut(s) 37, 244, 888, 907, 979, 1063, 1162
HapII CCGG 6 cut(s) 17, 116, 245, 374, 692, 889
Hin1II CATG 7 cut(s) 323, 474, 490, 896, 949, 987, 1085
HindIII AAGCTT 2 cut(s) 87, 170
HinfI GANTC 4 cut(s) 112, 281, 407, 789
HpaII CCGG 6 cut(s) 17, 116, 245, 374, 692, 889
HphI GGTGA 2 cut(s) 230, 806
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 9 cut(s) 81, 256, 527, 588, 610, 903, 934, 1148, 1322
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 296, 421, 985, 990, 1250
HpyCH4III ACNGT 2 cut(s) 857, 1057
HpyF10VI GCNNNNNNNGC 2 cut(s) 1097, 1159
HpyF3I CTNAG 2 cut(s) 107, 255
Hsp92II CATG 7 cut(s) 323, 474, 490, 896, 949, 987, 1085
Kpn2I TCCGGA 4 cut(s) 16, 115, 373, 691
KroI GCCGGC 1 cut(s) 888
KroNI GCCGGC 1 cut(s) 890
Kzo9I GATC 2 cut(s) 25, 72
LguI GCTCTTC 3 cut(s) 544, 588, 1143
Lsp1109I GCAGC 3 cut(s) 649, 1000, 1145
LweI GCATC 3 cut(s) 559, 581, 624
MaeI CTAG 2 cut(s) 93, 287
MaeIII GTNAC 4 cut(s) 218, 363, 967, 1178
MalI GATC 2 cut(s) 27, 74
MbiI CCGCTC 1 cut(s) 832
MboI GATC 2 cut(s) 25, 72
MboII GAAGA 8 cut(s) 5, 395, 407, 501, 531, 575, 889, 1130
MfeI CAATTG 1 cut(s) 1154
MhlI GDGCHC 1 cut(s) 34
MlyI GAGTC 2 cut(s) 275, 798
MmeI TCCRAC 1 cut(s) 1126
Mph1103I ATGCAT 2 cut(s) 596, 1083
MroI TCCGGA 4 cut(s) 16, 115, 373, 691
MroNI GCCGGC 1 cut(s) 888
MseI TTAA 6 cut(s) 168, 714, 819, 882, 1109, 1167
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 6 cut(s) 17, 116, 245, 374, 692, 889
MunI CAATTG 1 cut(s) 1154
MwoI GCNNNNNNNGC 2 cut(s) 1097, 1159
NaeI GCCGGC 1 cut(s) 890
NdeI CATATG 1 cut(s) 724
NdeII GATC 2 cut(s) 25, 72
NgoMIV GCCGGC 1 cut(s) 888
NlaIII CATG 7 cut(s) 323, 474, 490, 896, 949, 987, 1085
NmeAIII GCCGAG 1 cut(s) 1117
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 2 cut(s) 596, 1083
NspI RCATGY 3 cut(s) 896, 949, 1085
PceI AGGCCT 2 cut(s) 907, 979
PciI ACATGT 1 cut(s) 945
PciSI GCTCTTC 3 cut(s) 544, 588, 1143
PdiI GCCGGC 1 cut(s) 890
PfeI GAWTC 2 cut(s) 112, 407
PkrI GCNGC 4 cut(s) 639, 1015, 1062, 1135
PleI GAGTC 2 cut(s) 275, 797
PpsI GAGTC 2 cut(s) 275, 797
PscI ACATGT 1 cut(s) 945
PshBI ATTAAT 1 cut(s) 882
PspEI GGTNACC 1 cut(s) 967
RsaI GTAC 1 cut(s) 1086
RsaNI GTAC 1 cut(s) 1085
SapI GCTCTTC 3 cut(s) 544, 588, 1143
SaqAI TTAA 6 cut(s) 168, 714, 819, 882, 1109, 1167
SatI GCNGC 4 cut(s) 638, 1014, 1061, 1134
Sau3AI GATC 2 cut(s) 25, 72
SchI GAGTC 2 cut(s) 275, 798
SduI GDGCHC 1 cut(s) 34
SfaNI GCATC 3 cut(s) 559, 581, 624
SfcI CTRYAG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SseBI AGGCCT 2 cut(s) 907, 979
SsiI CCGC 3 cut(s) 295, 830, 1060
SspMI CTAG 2 cut(s) 93, 287
StuI AGGCCT 2 cut(s) 907, 979
TaaI ACNGT 2 cut(s) 857, 1057
TaqI TCGA 1 cut(s) 1284
TauI GCSGC 1 cut(s) 1063
TfiI GAWTC 2 cut(s) 112, 407
Tru1I TTAA 6 cut(s) 168, 714, 819, 882, 1109, 1167
Tru9I TTAA 6 cut(s) 168, 714, 819, 882, 1109, 1167
TscAI CASTG 1 cut(s) 1060
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 3 cut(s) 637, 1013, 1133
Tsp45I GTSAC 1 cut(s) 218
TspGWI ACGGA 3 cut(s) 351, 362, 453
TspRI CASTG 1 cut(s) 1060
Vha464I CTTAAG 1 cut(s) 167
VneI GTGCAC 1 cut(s) 30
VspI ATTAAT 1 cut(s) 882
XapI RAATTY 6 cut(s) 122, 248, 307, 314, 521, 716
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 3 cut(s) 896, 949, 1085
XspI CTAG 2 cut(s) 93, 287
Zsp2I ATGCAT 2 cut(s) 596, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.