B3 domain-containing
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 252, 801, 1459 |
| AclWI | GGATC | 2 cut(s) | 472, 678 |
| AcoI | YGGCCR | 2 cut(s) | 514, 767 |
| AcsI | RAATTY | 9 cut(s) | 87, 98, 283, 636, 647, 832, 1250, 1346, 1789 |
| AcuI | CTGAAG | 2 cut(s) | 1724, 1754 |
| AfaI | GTAC | 2 cut(s) | 1686, 1893 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 589 |
| AflII | CTTAAG | 1 cut(s) | 143 |
| AflIII | ACRYGT | 1 cut(s) | 1836 |
| AhlI | ACTAGT | 1 cut(s) | 479 |
| AjnI | CCWGG | 1 cut(s) | 511 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1102, 1134 |
| Alw21I | GWGCWC | 2 cut(s) | 1072, 1872 |
| Alw26I | GTCTC | 7 cut(s) | 111, 320, 414, 573, 1015, 1255, 1845 |
| AlwI | GGATC | 2 cut(s) | 472, 678 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 329 |
| Ama87I | CYCGRG | 1 cut(s) | 611 |
| AoxI | GGCC | 5 cut(s) | 446, 514, 767, 1562, 1760 |
| ApeKI | GCWGC | 3 cut(s) | 1276, 1691, 1817 |
| ApoI | RAATTY | 9 cut(s) | 87, 98, 283, 636, 647, 832, 1250, 1346, 1789 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1318 |
| AspLEI | GCGC | 1 cut(s) | 1486 |
| AspS9I | GGNCC | 2 cut(s) | 473, 1456 |
| AsuHPI | GGTGA | 3 cut(s) | 426, 677, 1783 |
| AsuII | TTCGAA | 3 cut(s) | 294, 843, 1476 |
| AvaI | CYCGRG | 1 cut(s) | 611 |
| AvaII | GGWCC | 2 cut(s) | 473, 1456 |
| BaeGI | GKGCMC | 1 cut(s) | 900 |
| BalI | TGGCCA | 2 cut(s) | 516, 769 |
| BanII | GRGCYC | 1 cut(s) | 1872 |
| BauI | CACGAG | 1 cut(s) | 1232 |
| Bbv12I | GWGCWC | 2 cut(s) | 1072, 1872 |
| BbvI | GCAGC | 3 cut(s) | 1263, 1678, 1804 |
| BccI | CCATC | 4 cut(s) | 347, 439, 445, 1252 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1597, 1631 |
| BciT130I | CCWGG | 1 cut(s) | 513 |
| BclI | TGATCA | 1 cut(s) | 1228 |
| BcoDI | GTCTC | 7 cut(s) | 111, 320, 414, 573, 1015, 1255, 1845 |
| BcuI | ACTAGT | 1 cut(s) | 479 |
| BfaI | CTAG | 9 cut(s) | 72, 245, 444, 480, 576, 780, 812, 1038, 1806 |
| BfrI | CTTAAG | 1 cut(s) | 143 |
| BisI | GCNGC | 3 cut(s) | 1277, 1692, 1818 |
| BlsI | GCNGC | 3 cut(s) | 1278, 1693, 1819 |
| Bme1390I | CCNGG | 1 cut(s) | 513 |
| Bme18I | GGWCC | 2 cut(s) | 473, 1456 |
| BmeT110I | CYCGRG | 1 cut(s) | 611 |
| BmgT120I | GGNCC | 2 cut(s) | 473, 1456 |
| BmrFI | CCNGG | 1 cut(s) | 513 |
| BmrI | ACTGGG | 1 cut(s) | 696 |
| BmsI | GCATC | 3 cut(s) | 84, 358, 725 |
| BmuI | ACTGGG | 1 cut(s) | 696 |
| BoxI | GACNNNNGTC | 1 cut(s) | 252 |
| BpmI | CTGGAG | 1 cut(s) | 1206 |
| Bpu14I | TTCGAA | 3 cut(s) | 294, 843, 1476 |
| BpuEI | CTTGAG | 1 cut(s) | 1015 |
| BsaI | GGTCTC | 2 cut(s) | 573, 1015 |
| BsaJI | CCNNGG | 3 cut(s) | 277, 870, 1083 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 589 |
| Bse118I | RCCGGY | 1 cut(s) | 1687 |
| Bse1I | ACTGG | 3 cut(s) | 594, 702, 1523 |
| Bse3DI | GCAATG | 2 cut(s) | 1123, 1287 |
| BseBI | CCWGG | 1 cut(s) | 513 |
| BseDI | CCNNGG | 3 cut(s) | 277, 870, 1083 |
| BseGI | GGATG | 2 cut(s) | 67, 1438 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 589 |
| BseMI | GCAATG | 2 cut(s) | 1123, 1287 |
| BseNI | ACTGG | 3 cut(s) | 594, 702, 1523 |
| BseSI | GKGCMC | 1 cut(s) | 900 |
| BseXI | GCAGC | 3 cut(s) | 1263, 1678, 1804 |
| BseYI | CCCAGC | 2 cut(s) | 404, 1812 |
| BsgI | GTGCAG | 1 cut(s) | 650 |
| BshFI | GGCC | 5 cut(s) | 448, 516, 769, 1564, 1762 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1072, 1872 |
| BsiHKCI | CYCGRG | 1 cut(s) | 611 |
| BsiSI | CCGG | 1 cut(s) | 1688 |
| BslFI | GGGAC | 3 cut(s) | 628, 1424, 1604 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 589 |
| BsmAI | GTCTC | 7 cut(s) | 111, 320, 414, 573, 1015, 1255, 1845 |
| BsmBI | CGTCTC | 1 cut(s) | 1845 |
| BsmFI | GGGAC | 3 cut(s) | 628, 1424, 1604 |
| BsnI | GGCC | 5 cut(s) | 448, 516, 769, 1564, 1762 |
| Bso31I | GGTCTC | 2 cut(s) | 573, 1015 |
| BsoBI | CYCGRG | 1 cut(s) | 611 |
| Bsp119I | TTCGAA | 3 cut(s) | 294, 843, 1476 |
| Bsp1286I | GDGCHC | 3 cut(s) | 900, 1072, 1872 |
| Bsp143I | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| Bsp19I | CCATGG | 1 cut(s) | 1083 |
| BspACI | CCGC | 3 cut(s) | 252, 801, 1459 |
| BspANI | GGCC | 5 cut(s) | 448, 516, 769, 1564, 1762 |
| BspPI | GGATC | 2 cut(s) | 472, 678 |
| BspQI | GCTCTTC | 1 cut(s) | 1198 |
| BspT104I | TTCGAA | 3 cut(s) | 294, 843, 1476 |
| BspTI | CTTAAG | 1 cut(s) | 143 |
| BspTNI | GGTCTC | 2 cut(s) | 573, 1015 |
| BsrDI | GCAATG | 2 cut(s) | 1123, 1287 |
| BsrFI | RCCGGY | 1 cut(s) | 1687 |
| BsrI | ACTGG | 3 cut(s) | 594, 702, 1523 |
| BssAI | RCCGGY | 1 cut(s) | 1687 |
| BssECI | CCNNGG | 3 cut(s) | 277, 870, 1083 |
| BssMI | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| BssSI | CACGAG | 1 cut(s) | 1232 |
| BssT1I | CCWWGG | 2 cut(s) | 277, 1083 |
| Bst2BI | CACGAG | 1 cut(s) | 1232 |
| Bst2UI | CCWGG | 1 cut(s) | 513 |
| Bst4CI | ACNGT | 4 cut(s) | 194, 685, 895, 1225 |
| Bst6I | CTCTTC | 1 cut(s) | 1198 |
| BstAFI | CTTAAG | 1 cut(s) | 143 |
| BstBI | TTCGAA | 3 cut(s) | 294, 843, 1476 |
| BstC8I | GCNNGC | 4 cut(s) | 518, 1281, 1285, 1606 |
| BstDEI | CTNAG | 1 cut(s) | 1639 |
| BstDSI | CCRYGG | 2 cut(s) | 870, 1083 |
| BstF5I | GGATG | 2 cut(s) | 67, 1438 |
| BstHHI | GCGC | 1 cut(s) | 1486 |
| BstKTI | GATC | 6 cut(s) | 467, 673, 1043, 1231, 1757, 1881 |
| BstMAI | GTCTC | 7 cut(s) | 111, 320, 414, 573, 1015, 1255, 1845 |
| BstMBI | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 145, 1197, 1289, 1823 |
| BstNI | CCWGG | 1 cut(s) | 513 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 252 |
| BstSCI | CCNGG | 1 cut(s) | 511 |
| BstSLI | GKGCMC | 1 cut(s) | 900 |
| BstV1I | GCAGC | 3 cut(s) | 1263, 1678, 1804 |
| BstX2I | RGATCY | 1 cut(s) | 670 |
| BstYI | RGATCY | 1 cut(s) | 670 |
| BsuRI | GGCC | 5 cut(s) | 448, 516, 769, 1564, 1762 |
| BtgI | CCRYGG | 2 cut(s) | 870, 1083 |
| BtsCI | GGATG | 2 cut(s) | 67, 1438 |
| BtsIMutI | CAGTG | 3 cut(s) | 141, 199, 709 |
| Cac8I | GCNNGC | 4 cut(s) | 518, 1281, 1285, 1606 |
| CaiI | CAGNNNCTG | 1 cut(s) | 329 |
| CfoI | GCGC | 1 cut(s) | 1486 |
| Cfr10I | RCCGGY | 1 cut(s) | 1687 |
| Cfr13I | GGNCC | 2 cut(s) | 473, 1456 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 2 cut(s) | 1685, 1892 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 859, 894 |
| CviAII | CATG | 2 cut(s) | 1084, 1873 |
| CviQI | GTAC | 2 cut(s) | 1685, 1892 |
| DdeI | CTNAG | 1 cut(s) | 1639 |
| DpnI | GATC | 6 cut(s) | 466, 672, 1042, 1230, 1756, 1880 |
| DpnII | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| EaeI | YGGCCR | 2 cut(s) | 514, 767 |
| Eam1104I | CTCTTC | 1 cut(s) | 1198 |
| EarI | CTCTTC | 1 cut(s) | 1198 |
| Ecl136II | GAGCTC | 1 cut(s) | 1870 |
| Eco130I | CCWWGG | 2 cut(s) | 277, 1083 |
| Eco147I | AGGCCT | 1 cut(s) | 448 |
| Eco24I | GRGCYC | 1 cut(s) | 1872 |
| Eco31I | GGTCTC | 2 cut(s) | 573, 1015 |
| Eco47I | GGWCC | 2 cut(s) | 473, 1456 |
| Eco53kI | GAGCTC | 1 cut(s) | 1870 |
| Eco57I | CTGAAG | 2 cut(s) | 1724, 1754 |
| Eco88I | CYCGRG | 1 cut(s) | 611 |
| EcoICRI | GAGCTC | 1 cut(s) | 1870 |
| EcoRI | GAATTC | 3 cut(s) | 283, 832, 1789 |
| EcoRII | CCWGG | 1 cut(s) | 511 |
| EcoT14I | CCWWGG | 2 cut(s) | 277, 1083 |
| EcoT38I | GRGCYC | 1 cut(s) | 1872 |
| ErhI | CCWWGG | 2 cut(s) | 277, 1083 |
| Esp3I | CGTCTC | 1 cut(s) | 1845 |
| FaeI | CATG | 2 cut(s) | 1087, 1876 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1470, 1502 |
| FaqI | GGGAC | 3 cut(s) | 628, 1424, 1604 |
| FatI | CATG | 2 cut(s) | 1083, 1872 |
| FbaI | TGATCA | 1 cut(s) | 1228 |
| Fnu4HI | GCNGC | 3 cut(s) | 1277, 1692, 1818 |
| FokI | GGATG | 2 cut(s) | 74, 1445 |
| FriOI | GRGCYC | 1 cut(s) | 1872 |
| Fsp4HI | GCNGC | 3 cut(s) | 1277, 1692, 1818 |
| FspBI | CTAG | 9 cut(s) | 72, 245, 444, 480, 576, 780, 812, 1038, 1806 |
| GlaI | GCGC | 1 cut(s) | 1485 |
| GluI | GCNGC | 3 cut(s) | 1277, 1692, 1818 |
| GsaI | CCCAGC | 2 cut(s) | 408, 1816 |
| GsuI | CTGGAG | 1 cut(s) | 1206 |
| HaeIII | GGCC | 5 cut(s) | 448, 516, 769, 1564, 1762 |
| HapII | CCGG | 1 cut(s) | 1688 |
| HgaI | GACGC | 1 cut(s) | 128 |
| HhaI | GCGC | 1 cut(s) | 1486 |
| Hin1II | CATG | 2 cut(s) | 1087, 1876 |
| Hin6I | GCGC | 1 cut(s) | 1484 |
| HinP1I | GCGC | 1 cut(s) | 1484 |
| HincII | GTYRAC | 1 cut(s) | 364 |
| HindII | GTYRAC | 1 cut(s) | 364 |
| HindIII | AAGCTT | 2 cut(s) | 146, 1736 |
| HinfI | GANTC | 9 cut(s) | 353, 1079, 1118, 1209, 1235, 1583, 1627, 1723, 1774 |
| HpaII | CCGG | 1 cut(s) | 1688 |
| HphI | GGTGA | 3 cut(s) | 426, 677, 1783 |
| Hpy166II | GTNNAC | 3 cut(s) | 364, 1547, 1903 |
| Hpy188I | TCNGA | 7 cut(s) | 654, 712, 1045, 1057, 1138, 1249, 1913 |
| Hpy8I | GTNNAC | 3 cut(s) | 364, 1547, 1903 |
| Hpy99I | CGWCG | 1 cut(s) | 353 |
| HpyAV | CCTTC | 6 cut(s) | 459, 821, 990, 1148, 1307, 1575 |
| HpyCH4III | ACNGT | 4 cut(s) | 194, 685, 895, 1225 |
| HpyCH4IV | ACGT | 3 cut(s) | 1494, 1836, 1854 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 145, 1197, 1289, 1823 |
| HpyF3I | CTNAG | 1 cut(s) | 1639 |
| HpySE526I | ACGT | 3 cut(s) | 1494, 1836, 1854 |
| Hsp92II | CATG | 2 cut(s) | 1087, 1876 |
| HspAI | GCGC | 1 cut(s) | 1484 |
| Ksp22I | TGATCA | 1 cut(s) | 1228 |
| Kzo9I | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| LguI | GCTCTTC | 1 cut(s) | 1198 |
| LmnI | GCTCC | 1 cut(s) | 1507 |
| Lsp1109I | GCAGC | 3 cut(s) | 1263, 1678, 1804 |
| LweI | GCATC | 3 cut(s) | 84, 358, 725 |
| MaeI | CTAG | 9 cut(s) | 72, 245, 444, 480, 576, 780, 812, 1038, 1806 |
| MaeII | ACGT | 3 cut(s) | 1494, 1836, 1854 |
| MaeIII | GTNAC | 6 cut(s) | 178, 254, 803, 1552, 1642, 1653 |
| MalI | GATC | 6 cut(s) | 466, 672, 1042, 1230, 1756, 1880 |
| MboI | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| MboII | GAAGA | 6 cut(s) | 220, 468, 923, 1185, 1326, 1560 |
| MfeI | CAATTG | 1 cut(s) | 1379 |
| MflI | RGATCY | 1 cut(s) | 670 |
| MhlI | GDGCHC | 3 cut(s) | 900, 1072, 1872 |
| MlsI | TGGCCA | 2 cut(s) | 516, 769 |
| MluNI | TGGCCA | 2 cut(s) | 516, 769 |
| MlyI | GAGTC | 2 cut(s) | 347, 1244 |
| MmeI | TCCRAC | 1 cut(s) | 500 |
| Mox20I | TGGCCA | 2 cut(s) | 516, 769 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1318 |
| MscI | TGGCCA | 2 cut(s) | 516, 769 |
| Msp20I | TGGCCA | 2 cut(s) | 516, 769 |
| MspA1I | CMGCKG | 1 cut(s) | 1184 |
| MspCI | CTTAAG | 1 cut(s) | 143 |
| MspI | CCGG | 1 cut(s) | 1688 |
| MspR9I | CCNGG | 1 cut(s) | 513 |
| MunI | CAATTG | 1 cut(s) | 1379 |
| MvaI | CCWGG | 1 cut(s) | 513 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 145, 1197, 1289, 1823 |
| NcoI | CCATGG | 1 cut(s) | 1083 |
| NdeII | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| NlaIII | CATG | 2 cut(s) | 1087, 1876 |
| NmuCI | GTSAC | 4 cut(s) | 178, 254, 1642, 1653 |
| NspV | TTCGAA | 3 cut(s) | 294, 843, 1476 |
| PceI | AGGCCT | 1 cut(s) | 448 |
| PciSI | GCTCTTC | 1 cut(s) | 1198 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1318 |
| PfeI | GAWTC | 7 cut(s) | 1079, 1118, 1209, 1583, 1627, 1723, 1774 |
| PkrI | GCNGC | 3 cut(s) | 1278, 1693, 1819 |
| PleI | GAGTC | 2 cut(s) | 347, 1243 |
| PpsI | GAGTC | 2 cut(s) | 347, 1243 |
| PshAI | GACNNNNGTC | 1 cut(s) | 252 |
| Psp124BI | GAGCTC | 1 cut(s) | 1872 |
| Psp6I | CCWGG | 1 cut(s) | 511 |
| PspFI | CCCAGC | 2 cut(s) | 404, 1812 |
| PspGI | CCWGG | 1 cut(s) | 511 |
| PspPI | GGNCC | 2 cut(s) | 473, 1456 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1884, 1916 |
| PstNI | CAGNNNCTG | 1 cut(s) | 329 |
| PsuI | RGATCY | 1 cut(s) | 670 |
| PvuII | CAGCTG | 1 cut(s) | 1184 |
| RsaI | GTAC | 2 cut(s) | 1686, 1893 |
| RsaNI | GTAC | 2 cut(s) | 1685, 1892 |
| SacI | GAGCTC | 1 cut(s) | 1872 |
| SapI | GCTCTTC | 1 cut(s) | 1198 |
| SatI | GCNGC | 3 cut(s) | 1277, 1692, 1818 |
| Sau3AI | GATC | 6 cut(s) | 464, 670, 1040, 1228, 1754, 1878 |
| Sau96I | GGNCC | 2 cut(s) | 473, 1456 |
| SchI | GAGTC | 2 cut(s) | 347, 1244 |
| ScrFI | CCNGG | 1 cut(s) | 513 |
| SduI | GDGCHC | 3 cut(s) | 900, 1072, 1872 |
| SfaNI | GCATC | 3 cut(s) | 84, 358, 725 |
| SfuI | TTCGAA | 3 cut(s) | 294, 843, 1476 |
| SinI | GGWCC | 2 cut(s) | 473, 1456 |
| SmlI | CTYRAG | 2 cut(s) | 143, 1030 |
| SmoI | CTYRAG | 2 cut(s) | 143, 1030 |
| SpeI | ACTAGT | 1 cut(s) | 479 |
| SseBI | AGGCCT | 1 cut(s) | 448 |
| SsiI | CCGC | 3 cut(s) | 252, 801, 1459 |
| SspMI | CTAG | 9 cut(s) | 72, 245, 444, 480, 576, 780, 812, 1038, 1806 |
| SstI | GAGCTC | 1 cut(s) | 1872 |
| StuI | AGGCCT | 1 cut(s) | 448 |
| StyD4I | CCNGG | 1 cut(s) | 511 |
| StyI | CCWWGG | 2 cut(s) | 277, 1083 |
| TaaI | ACNGT | 4 cut(s) | 194, 685, 895, 1225 |
| TaiI | ACGT | 3 cut(s) | 1497, 1839, 1857 |
| TaqI | TCGA | 7 cut(s) | 294, 348, 820, 843, 1307, 1476, 1866 |
| TatI | WGTACW | 1 cut(s) | 1891 |
| TfiI | GAWTC | 7 cut(s) | 1079, 1118, 1209, 1583, 1627, 1723, 1774 |
| TscAI | CASTG | 3 cut(s) | 141, 199, 709 |
| TseFI | GTSAC | 4 cut(s) | 178, 254, 1642, 1653 |
| TseI | GCWGC | 3 cut(s) | 1276, 1691, 1817 |
| Tsp45I | GTSAC | 4 cut(s) | 178, 254, 1642, 1653 |
| TspDTI | ATGAA | 9 cut(s) | 78, 509, 840, 924, 930, 972, 1157, 1560, 1699 |
| TspGWI | ACGGA | 1 cut(s) | 887 |
| TspRI | CASTG | 3 cut(s) | 141, 199, 709 |
| Vha464I | CTTAAG | 1 cut(s) | 143 |
| VpaK11BI | GGWCC | 2 cut(s) | 473, 1456 |
| XapI | RAATTY | 9 cut(s) | 87, 98, 283, 636, 647, 832, 1250, 1346, 1789 |
| XbaI | TCTAGA | 2 cut(s) | 244, 575 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1318 |
| XspI | CTAG | 9 cut(s) | 72, 245, 444, 480, 576, 780, 812, 1038, 1806 |