B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 15 - 92 | 3.1e-12 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 411 |
| Acc36I | ACCTGC | 1 cut(s) | 228 |
| AccII | CGCG | 1 cut(s) | 426 |
| AccIII | TCCGGA | 1 cut(s) | 52 |
| AcoI | YGGCCR | 1 cut(s) | 179 |
| AcsI | RAATTY | 1 cut(s) | 91 |
| AfaI | GTAC | 1 cut(s) | 149 |
| AgsI | TTSAA | 3 cut(s) | 320, 353, 447 |
| Alw26I | GTCTC | 2 cut(s) | 389, 494 |
| Aor13HI | TCCGGA | 1 cut(s) | 52 |
| AoxI | GGCC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 91 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 442 |
| AsuHPI | GGTGA | 1 cut(s) | 167 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 139, 172 |
| BalI | TGGCCA | 1 cut(s) | 181 |
| BciVI | GTATCC | 1 cut(s) | 306 |
| BcoDI | GTCTC | 2 cut(s) | 389, 494 |
| BfaI | CTAG | 1 cut(s) | 249 |
| BfuAI | ACCTGC | 1 cut(s) | 228 |
| BfuI | GTATCC | 1 cut(s) | 306 |
| BglII | AGATCT | 1 cut(s) | 82 |
| BmsI | GCATC | 1 cut(s) | 9 |
| BsaWI | WCCGGW | 1 cut(s) | 52 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 50, 80 |
| BseAI | TCCGGA | 1 cut(s) | 52 |
| BseGI | GGATG | 1 cut(s) | 505 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BsgI | GTGCAG | 1 cut(s) | 62 |
| Bsh1236I | CGCG | 1 cut(s) | 426 |
| BshFI | GGCC | 1 cut(s) | 181 |
| BsiSI | CCGG | 1 cut(s) | 53 |
| BsmAI | GTCTC | 2 cut(s) | 389, 494 |
| BsnI | GGCC | 1 cut(s) | 181 |
| Bsp13I | TCCGGA | 1 cut(s) | 52 |
| Bsp143I | GATC | 2 cut(s) | 82, 288 |
| BspANI | GGCC | 1 cut(s) | 181 |
| BspEI | TCCGGA | 1 cut(s) | 52 |
| BspFNI | CGCG | 1 cut(s) | 426 |
| BspMI | ACCTGC | 1 cut(s) | 228 |
| BssMI | GATC | 2 cut(s) | 82, 288 |
| Bst4CI | ACNGT | 3 cut(s) | 349, 375, 558 |
| BstDEI | CTNAG | 1 cut(s) | 380 |
| BstF5I | GGATG | 1 cut(s) | 505 |
| BstFNI | CGCG | 1 cut(s) | 426 |
| BstKTI | GATC | 2 cut(s) | 85, 291 |
| BstMAI | GTCTC | 2 cut(s) | 389, 494 |
| BstMBI | GATC | 2 cut(s) | 82, 288 |
| BstUI | CGCG | 1 cut(s) | 426 |
| BstX2I | RGATCY | 1 cut(s) | 82 |
| BstYI | RGATCY | 1 cut(s) | 82 |
| BsuI | GTATCC | 1 cut(s) | 306 |
| BsuRI | GGCC | 1 cut(s) | 181 |
| BtsCI | GGATG | 1 cut(s) | 505 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 3 cut(s) | 345, 371, 453 |
| BveI | ACCTGC | 1 cut(s) | 228 |
| Csp6I | GTAC | 1 cut(s) | 148 |
| CviAII | CATG | 3 cut(s) | 114, 335, 547 |
| CviJI | RGCY | 3 cut(s) | 109, 181, 210 |
| CviKI_1 | RGCY | 3 cut(s) | 109, 181, 210 |
| CviQI | GTAC | 1 cut(s) | 148 |
| DdeI | CTNAG | 1 cut(s) | 380 |
| DpnI | GATC | 2 cut(s) | 84, 290 |
| DpnII | GATC | 2 cut(s) | 82, 288 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 411 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 411 |
| EaeI | YGGCCR | 1 cut(s) | 179 |
| FaeI | CATG | 3 cut(s) | 117, 338, 550 |
| FatI | CATG | 3 cut(s) | 113, 334, 546 |
| FokI | GGATG | 1 cut(s) | 492 |
| FspBI | CTAG | 1 cut(s) | 249 |
| HaeIII | GGCC | 1 cut(s) | 181 |
| HapII | CCGG | 1 cut(s) | 53 |
| Hin1II | CATG | 3 cut(s) | 117, 338, 550 |
| HinfI | GANTC | 2 cut(s) | 49, 341 |
| HpaII | CCGG | 1 cut(s) | 53 |
| HphI | GGTGA | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 3 cut(s) | 37, 124, 233 |
| Hpy188III | TCNNGA | 4 cut(s) | 53, 190, 249, 402 |
| HpyAV | CCTTC | 2 cut(s) | 166, 233 |
| HpyCH4III | ACNGT | 3 cut(s) | 349, 375, 558 |
| HpyCH4V | TGCA | 2 cut(s) | 43, 458 |
| HpyF3I | CTNAG | 1 cut(s) | 380 |
| Hsp92II | CATG | 3 cut(s) | 117, 338, 550 |
| Kpn2I | TCCGGA | 1 cut(s) | 52 |
| Kzo9I | GATC | 2 cut(s) | 82, 288 |
| LpnPI | CCDG | 6 cut(s) | 29, 66, 195, 209, 233, 242 |
| LweI | GCATC | 1 cut(s) | 9 |
| MaeI | CTAG | 1 cut(s) | 249 |
| MaeIII | GTNAC | 1 cut(s) | 97 |
| MalI | GATC | 2 cut(s) | 84, 290 |
| MboI | GATC | 2 cut(s) | 82, 288 |
| MboII | GAAGA | 1 cut(s) | 332 |
| MfeI | CAATTG | 1 cut(s) | 282 |
| MflI | RGATCY | 1 cut(s) | 82 |
| MlsI | TGGCCA | 1 cut(s) | 181 |
| MluCI | AATT | 3 cut(s) | 91, 282, 441 |
| MluNI | TGGCCA | 1 cut(s) | 181 |
| MnlI | CCTC | 5 cut(s) | 49, 151, 355, 426, 432 |
| Mox20I | TGGCCA | 1 cut(s) | 181 |
| MroI | TCCGGA | 1 cut(s) | 52 |
| MroXI | GAANNNNTTC | 1 cut(s) | 442 |
| MscI | TGGCCA | 1 cut(s) | 181 |
| MseI | TTAA | 1 cut(s) | 303 |
| Msp20I | TGGCCA | 1 cut(s) | 181 |
| MspI | CCGG | 1 cut(s) | 53 |
| MunI | CAATTG | 1 cut(s) | 282 |
| MvnI | CGCG | 1 cut(s) | 426 |
| NdeII | GATC | 2 cut(s) | 82, 288 |
| NlaIII | CATG | 3 cut(s) | 117, 338, 550 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 1 cut(s) | 442 |
| PfeI | GAWTC | 2 cut(s) | 49, 341 |
| PsuI | RGATCY | 1 cut(s) | 82 |
| RsaI | GTAC | 1 cut(s) | 149 |
| RsaNI | GTAC | 1 cut(s) | 148 |
| SaqAI | TTAA | 1 cut(s) | 303 |
| Sau3AI | GATC | 2 cut(s) | 82, 288 |
| SetI | ASST | 5 cut(s) | 149, 162, 222, 261, 532 |
| SfaNI | GCATC | 1 cut(s) | 9 |
| Sse9I | AATT | 3 cut(s) | 91, 282, 441 |
| SspMI | CTAG | 1 cut(s) | 249 |
| TaaI | ACNGT | 3 cut(s) | 349, 375, 558 |
| TaqI | TCGA | 3 cut(s) | 191, 291, 403 |
| TasI | AATT | 3 cut(s) | 91, 282, 441 |
| TfiI | GAWTC | 2 cut(s) | 49, 341 |
| Tru1I | TTAA | 1 cut(s) | 303 |
| Tru9I | TTAA | 1 cut(s) | 303 |
| TscAI | CASTG | 3 cut(s) | 352, 378, 460 |
| TspDTI | ATGAA | 5 cut(s) | 27, 252, 345, 503, 535 |
| TspRI | CASTG | 3 cut(s) | 352, 378, 460 |
| XapI | RAATTY | 1 cut(s) | 91 |
| XbaI | TCTAGA | 1 cut(s) | 248 |
| XmnI | GAANNNNTTC | 1 cut(s) | 442 |
| XspI | CTAG | 1 cut(s) | 249 |