Rh2AG163700

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000156
Physical Location & Seq
Reverse (-)
15470453 .. 15473608
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG163700.1

Sequence Viewer

Length: 1605 bp
ATGAGTTCTTTTCGCCGGGAAAACGACGGCCGCCGGCCAATATGTTGTTCTCCGACTCCCCGTTTTATCCAGGTTATCTTGGATGATACTTCTAGAGACGTCAAACTTGGCATTCCAAAGAAATTTGTGAATGAATATGGTCAGTGTCTATCAAATTCAGTATGTCTTAAGCTTCCAAGTGGCTCCGAATGGGAAGTAGAAGTGACAAGAAGCAATGGAAAGGTTTGGTTTGAGAAGTGTTGGCCAGAGTTCTCAAAGTTTTACTCTCTTAGCATCGGTGATTTTCTAGTTTTTGAATATGAAGGGGATTCTGAATTCCACGTTTTCATATTTGATAGAAGCACCACAGAGATTGATTATCCCATAAAAAGGCCCAAGATGGAAGAAGCTCCTGAAGATGAATTCTCTGTTGAAATCTTGGAGGACATTCCACCCAGCCCAAAAACAAGGGAGAAAACTTCATTACCGTGTCGTCAACCTTACAAGAAAATGAAGACAAGTTTGACTGGTAAAGCAGACCAGATGTTTGAAAATGAGAACACCGAACCTTTTGAGAATCCAAAGAAAAACAAAGATTCTCATTGCTCTGCATCAAAAATCAAAAGTGTAAGTGGTTTTCCAGCAAAAATAGATGGCGGAGGCTCATCTAGCACTGAGAGGTTTTTAAAGCAATCACCTGAGTTTTGTGGGGAGAAGCATACATCAAATATAAATGAAAAAGCCTTAATACAGAGAAACATTGCTTCCAAATCTGAAAAGCCTTATTTCAAGGTTGTCATGCAGCGCTCATATATTCAAAAAGGTTATTTGTCTGTGCCATCTGAGTTTTCCAAGAGACATCTTACAAAGAAGCCTGCTACTGTGATCCTTCAAGTTTTGGATGGAAGAACTTGGTCCGTTCAATTGAAGTATCATCATGAACGCTCAGAAGCTAGATTCCAGAGTTGTTGGCCACTATTTGTAAGGGAGAATAATTTGAAAGTTGGTGATGCATGTGTCTTTACCTTAATTAACTGCAGTGCATTTGTATTTGAAGTGGTCTTTTATCCTGCCGCAGAAGCTGCAAATTGCCCCTTGTCACCAGGTGGAAGATCAGGAGCAATTTATCAAGTCAAAAGTAAGGGAAGTCCGATAATAGAAGTAGAATCTGAATGCGGTGTGATATGTGGAATTGGTGTATCTGGCTCTCTTGAAACTGGCAAGAACAAAATGTCAAAGACTAGTGTGCAGGTTACTGAAAGGCCCTCTTCATCTTTGACGGCTCCATTGGATAATCATCATGAAGCTGCCAACAACTTCGTCTCAGAGAATCCCTTTTTCAAAGTCACTTTGGGTTCCTCCCATATGGAGAAGTCAGTTGTGCATGTACCAGCTAGTTTTGCTTGGAGTTTCATTAAAAGGAAGAAACAAAAAGTGATGCTTCAGGTCACAGATAGATTGTGGCCTGTGGATTTGATAGAATTTAAGCCATCTTTAGCTTCATTTTCTACTGGCTGGGCCACATTTGTTGAGGAATATTCATTAAGAGTCGGAGATGTTTGCATATTTGAGCTTATGGAGATGAATGATGACATTATACTACAAGTTCATTTTTTCAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

534

Amino Acids

60.48

Weight (kDa)

8.04

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 28 - 113 1.2e-15 B3 DNA binding domain
B3 PF02362 256 - 346 6e-18 B3 DNA binding domain
B3 PF02362 439 - 532 3.6e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 1219
AciI CCGC 4 cut(s) 31, 636, 1053, 1155
AclWI GGATC 1 cut(s) 859
AcoI YGGCCR 4 cut(s) 28, 35, 242, 950
AcsI RAATTY 5 cut(s) 122, 154, 314, 401, 1460
AcuI CTGAAG 2 cut(s) 414, 1406
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 1 cut(s) 1368
AfeI AGCGCT 1 cut(s) 785
AfiI CCNNNNNNNGG 1 cut(s) 369
AflII CTTAAG 1 cut(s) 167
AhlI ACTAGT 1 cut(s) 1220
AjnI CCWGG 2 cut(s) 69, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 8 cut(s) 172, 389, 932, 1061, 1286, 1373, 1478, 1552
AluI AGCT 8 cut(s) 172, 389, 932, 1061, 1286, 1373, 1478, 1552
Alw26I GTCTC 3 cut(s) 90, 829, 1306
AlwI GGATC 1 cut(s) 859
AlwNI CAGNNNCTG 1 cut(s) 1061
Aor51HI AGCGCT 1 cut(s) 785
AoxI GGCC 8 cut(s) 28, 35, 242, 371, 950, 1241, 1442, 1497
ApeKI GCWGC 3 cut(s) 781, 1061, 1286
ApoI RAATTY 5 cut(s) 122, 154, 314, 401, 1460
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 4 cut(s) 372, 894, 1242, 1497
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 4 cut(s) 290, 666, 998, 1071
AvaII GGWCC 1 cut(s) 894
BalI TGGCCA 2 cut(s) 244, 952
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 3 cut(s) 793, 1048, 1273
BccI CCATC 5 cut(s) 373, 626, 826, 875, 1477
BceAI ACGGC 2 cut(s) 43, 1275
BciT130I CCWGG 2 cut(s) 71, 1083
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 3 cut(s) 90, 829, 1306
BcuI ACTAGT 1 cut(s) 1220
BfaI CTAG 6 cut(s) 93, 287, 648, 933, 1221, 1374
BfmI CTRYAG 1 cut(s) 1015
BfoI RGCGCY 1 cut(s) 787
BfrI CTTAAG 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 1219
BisI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1287
BlsI GCNGC 5 cut(s) 32, 783, 1054, 1063, 1288
Bme1390I CCNGG 3 cut(s) 17, 71, 1083
Bme18I GGWCC 1 cut(s) 894
BmgT120I GGNCC 4 cut(s) 372, 894, 1242, 1497
BmiI GGNNCC 3 cut(s) 184, 1263, 1336
BmrFI CCNGG 3 cut(s) 17, 71, 1083
BmsI GCATC 4 cut(s) 282, 599, 979, 1407
BpiI GAAGAC 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 1275
BsaHI GRCGYC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 3 cut(s) 511, 1201, 1495
Bse3DI GCAATG 3 cut(s) 220, 580, 738
Bse8I GATNNNNATC 1 cut(s) 1275
BseBI CCWGG 2 cut(s) 71, 1083
BseGI GGATG 2 cut(s) 88, 886
BseJI GATNNNNATC 1 cut(s) 1275
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMI GCAATG 3 cut(s) 220, 580, 738
BseMII CTCAG 5 cut(s) 645, 669, 813, 939, 1317
BseNI ACTGG 3 cut(s) 511, 1201, 1495
BseX3I CGGCCG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 793, 1048, 1273
BseYI CCCAGC 2 cut(s) 434, 1494
BsgI GTGCAG 1 cut(s) 1247
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1243, 1444, 1499
BsiEI CGRYCG 1 cut(s) 31
BsiSI CCGG 2 cut(s) 16, 34
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 3 cut(s) 90, 829, 1306
BsmBI CGTCTC 2 cut(s) 90, 1306
BsmI GAATGC 2 cut(s) 111, 1157
BsnI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1243, 1444, 1499
Bsp143I GATC 2 cut(s) 864, 1091
BspACI CCGC 4 cut(s) 31, 636, 1053, 1155
BspANI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1243, 1444, 1499
BspCNI CTCAG 5 cut(s) 646, 670, 814, 938, 1316
BspHI TCATGA 2 cut(s) 916, 1279
BspLI GGNNCC 3 cut(s) 184, 1263, 1336
BspMAI CTGCAG 1 cut(s) 1019
BspMI ACCTGC 1 cut(s) 1219
BspPI GGATC 1 cut(s) 859
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 3 cut(s) 220, 580, 738
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 3 cut(s) 511, 1201, 1495
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 2 cut(s) 864, 1091
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 71, 1083
Bst4CI ACNGT 2 cut(s) 468, 862
Bst6I CTCTTC 1 cut(s) 1252
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 1061
BstC8I GCNNGC 2 cut(s) 35, 855
BstDEI CTNAG 6 cut(s) 269, 654, 678, 822, 925, 1303
BstF5I GGATG 2 cut(s) 88, 886
BstH2I RGCGCY 1 cut(s) 787
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 2 cut(s) 867, 1094
BstMAI GTCTC 3 cut(s) 90, 829, 1306
BstMBI GATC 2 cut(s) 864, 1091
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 648, 1058, 1061, 1379
BstNI CCWGG 2 cut(s) 71, 1083
BstNSI RCATGY 2 cut(s) 996, 1367
BstSCI CCNGG 3 cut(s) 15, 69, 1081
BstSFI CTRYAG 1 cut(s) 1015
BstV1I GCAGC 3 cut(s) 793, 1048, 1273
BstV2I GAAGAC 1 cut(s) 500
BstZI CGGCCG 1 cut(s) 28
BsuRI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1243, 1444, 1499
BtsCI GGATG 2 cut(s) 88, 886
BtsI GCAGTG 1 cut(s) 1024
BtsIMutI CAGTG 3 cut(s) 149, 651, 1024
BveI ACCTGC 1 cut(s) 1219
Cac8I GCNNGC 2 cut(s) 35, 855
CaiI CAGNNNCTG 1 cut(s) 1061
CciI TCATGA 2 cut(s) 916, 1279
CfoI GCGC 1 cut(s) 786
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 4 cut(s) 372, 894, 1242, 1497
CsiI ACCWGGT 1 cut(s) 1081
Csp6I GTAC 1 cut(s) 1367
CspCI CAANNNNNGTGG 4 cut(s) 334, 369, 1489, 1524
CviAII CATG 5 cut(s) 778, 917, 993, 1280, 1364
CviQI GTAC 1 cut(s) 1367
DdeI CTNAG 6 cut(s) 269, 654, 678, 822, 925, 1303
DpnI GATC 2 cut(s) 866, 1093
DpnII GATC 2 cut(s) 864, 1091
DraI TTTAAA 1 cut(s) 666
DraIII CACNNNGTG 1 cut(s) 1085
EaeI YGGCCR 4 cut(s) 28, 35, 242, 950
EagI CGGCCG 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 1252
EarI CTCTTC 1 cut(s) 1252
EciI GGCGGA 1 cut(s) 651
EclXI CGGCCG 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 894
Eco47III AGCGCT 1 cut(s) 785
Eco52I CGGCCG 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 414, 1406
EcoO109I RGGNCCY 1 cut(s) 1242
EcoRI GAATTC 2 cut(s) 314, 401
EcoRII CCWGG 2 cut(s) 69, 1081
EcoT22I ATGCAT 1 cut(s) 994
Esp3I CGTCTC 2 cut(s) 90, 1306
FaeI CATG 5 cut(s) 781, 920, 996, 1283, 1367
FalI AAGNNNNNCTT 4 cut(s) 1231, 1263, 1404, 1436
FatI CATG 5 cut(s) 777, 916, 992, 1279, 1363
FauNDI CATATG 1 cut(s) 1344
Fnu4HI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1287
FokI GGATG 2 cut(s) 95, 893
Fsp4HI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1287
FspBI CTAG 6 cut(s) 93, 287, 648, 933, 1221, 1374
GlaI GCGC 1 cut(s) 785
GluI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1287
GsaI CCCAGC 2 cut(s) 438, 1498
HaeII RGCGCY 1 cut(s) 787
HaeIII GGCC 8 cut(s) 30, 37, 244, 373, 952, 1243, 1444, 1499
HapII CCGG 2 cut(s) 16, 34
HhaI GCGC 1 cut(s) 786
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 5 cut(s) 781, 920, 996, 1283, 1367
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 8 cut(s) 55, 308, 556, 575, 936, 1145, 1309, 1527
HpaII CCGG 2 cut(s) 16, 34
HphI GGTGA 4 cut(s) 290, 666, 998, 1071
Hpy166II GTNNAC 1 cut(s) 476
Hpy188III TCNNGA 7 cut(s) 93, 392, 917, 940, 1095, 1190, 1280
Hpy8I GTNNAC 1 cut(s) 476
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 296, 878
HpyCH4III ACNGT 2 cut(s) 468, 862
HpyCH4IV ACGT 2 cut(s) 99, 321
HpyCH4V TGCA 9 cut(s) 590, 781, 992, 1017, 1022, 1064, 1228, 1363, 1542
HpyF10VI GCNNNNNNNGC 4 cut(s) 648, 1058, 1061, 1379
HpyF3I CTNAG 6 cut(s) 269, 654, 678, 822, 925, 1303
HpySE526I ACGT 2 cut(s) 99, 321
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 5 cut(s) 781, 920, 996, 1283, 1367
HspAI GCGC 1 cut(s) 784
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 864, 1091
LmnI GCTCC 4 cut(s) 188, 394, 1097, 1267
Lsp1109I GCAGC 3 cut(s) 793, 1048, 1273
LweI GCATC 4 cut(s) 282, 599, 979, 1407
MabI ACCWGGT 1 cut(s) 1081
MaeI CTAG 6 cut(s) 93, 287, 648, 933, 1221, 1374
MaeII ACGT 2 cut(s) 99, 321
MaeIII GTNAC 5 cut(s) 202, 1077, 1231, 1324, 1426
MalI GATC 2 cut(s) 866, 1093
MboI GATC 2 cut(s) 864, 1091
MboII GAAGA 7 cut(s) 395, 407, 505, 897, 1101, 1239, 1414
MfeI CAATTG 1 cut(s) 902
MlsI TGGCCA 2 cut(s) 244, 952
MluNI TGGCCA 2 cut(s) 244, 952
MlyI GAGTC 2 cut(s) 49, 1536
MmeI TCCRAC 2 cut(s) 77, 1510
MnlI CCTC 6 cut(s) 415, 632, 651, 1255, 1348, 1504
Mox20I TGGCCA 2 cut(s) 244, 952
Mph1103I ATGCAT 1 cut(s) 994
MroNI GCCGGC 1 cut(s) 33
MscI TGGCCA 2 cut(s) 244, 952
MseI TTAA 8 cut(s) 168, 665, 725, 1007, 1011, 1395, 1464, 1523
MslI CAYNNNNRTG 1 cut(s) 466
Msp20I TGGCCA 2 cut(s) 244, 952
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 2 cut(s) 16, 34
MspR9I CCNGG 3 cut(s) 17, 71, 1083
MunI CAATTG 1 cut(s) 902
Mva1269I GAATGC 2 cut(s) 111, 1157
MvaI CCWGG 2 cut(s) 71, 1083
MwoI GCNNNNNNNGC 4 cut(s) 648, 1058, 1061, 1379
NaeI GCCGGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 17
NdeI CATATG 1 cut(s) 1344
NdeII GATC 2 cut(s) 864, 1091
NgoMIV GCCGGC 1 cut(s) 33
NlaIII CATG 5 cut(s) 781, 920, 996, 1283, 1367
NlaIV GGNNCC 3 cut(s) 184, 1263, 1336
NmuCI GTSAC 4 cut(s) 202, 1077, 1324, 1426
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 2 cut(s) 996, 1367
PacI TTAATTAA 1 cut(s) 1011
PagI TCATGA 2 cut(s) 916, 1279
PctI GAATGC 2 cut(s) 111, 1157
PdiI GCCGGC 1 cut(s) 35
PfeI GAWTC 6 cut(s) 308, 556, 575, 936, 1145, 1309
PkrI GCNGC 5 cut(s) 32, 783, 1054, 1063, 1288
PleI GAGTC 2 cut(s) 49, 1535
PpsI GAGTC 2 cut(s) 49, 1535
Psp6I CCWGG 2 cut(s) 69, 1081
PspFI CCCAGC 2 cut(s) 434, 1494
PspGI CCWGG 2 cut(s) 69, 1081
PspN4I GGNNCC 3 cut(s) 184, 1263, 1336
PspPI GGNCC 4 cut(s) 372, 894, 1242, 1497
PstI CTGCAG 1 cut(s) 1019
PstNI CAGNNNCTG 1 cut(s) 1061
RsaI GTAC 1 cut(s) 1368
RsaNI GTAC 1 cut(s) 1367
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 8 cut(s) 168, 665, 725, 1007, 1011, 1395, 1464, 1523
SatI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1287
Sau3AI GATC 2 cut(s) 864, 1091
Sau96I GGNCC 4 cut(s) 372, 894, 1242, 1497
SchI GAGTC 2 cut(s) 49, 1536
ScrFI CCNGG 3 cut(s) 17, 71, 1083
SexAI ACCWGGT 1 cut(s) 1081
SfaNI GCATC 4 cut(s) 282, 599, 979, 1407
SfcI CTRYAG 1 cut(s) 1015
SinI GGWCC 1 cut(s) 894
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 1220
SsiI CCGC 4 cut(s) 31, 636, 1053, 1155
SspI AATATT 1 cut(s) 1517
SspMI CTAG 6 cut(s) 93, 287, 648, 933, 1221, 1374
StyD4I CCNGG 3 cut(s) 15, 69, 1081
TaaI ACNGT 2 cut(s) 468, 862
TaiI ACGT 2 cut(s) 102, 324
TauI GCSGC 2 cut(s) 33, 1055
TfiI GAWTC 6 cut(s) 308, 556, 575, 936, 1145, 1309
Tru1I TTAA 8 cut(s) 168, 665, 725, 1007, 1011, 1395, 1464, 1523
Tru9I TTAA 8 cut(s) 168, 665, 725, 1007, 1011, 1395, 1464, 1523
TscAI CASTG 3 cut(s) 149, 658, 1024
TseFI GTSAC 4 cut(s) 202, 1077, 1324, 1426
TseI GCWGC 3 cut(s) 781, 1061, 1286
Tsp45I GTSAC 4 cut(s) 202, 1077, 1324, 1426
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 3 cut(s) 149, 658, 1024
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 894
XapI RAATTY 5 cut(s) 122, 154, 314, 401, 1460
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 2 cut(s) 996, 1367
XspI CTAG 6 cut(s) 93, 287, 648, 933, 1221, 1374
ZraI GACGTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.