Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

13432675 .. 13433841

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1159800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTTCTTTACGGCCAACATTTTCATCTACGACACCCCATTTTTTCAAAGTTATTCTTGATGACACAACGAGAGACACCAAACTTAAAGTTCCGATGAAATTTGTGATGAAATATGGAGAAGAGTTATCAAGTCCAGTATATCTTAGACTTCCATGTGGTTCAGAATGGGAAATAGAACTGAGAAGATGTAATGGTGAGGTTTGGTTTGAGAAGGGTTGGCCGGAGTTCTCCAAGTTTTACTCTCTTGACTACGCTTTTTGGCTTGTTTTCGGGTATGAAGGGAATTCAAGATTCCACGTCTTCATATTCGATAGAAGTTGCACAGAAGTTGACTATCCCATAAAATTGCCGGACAAGGAAAAAACCGATTACGAAGATGACGAGTCGGTTGAAATCTTGGATGATTTTCTCACAAGCCGAAGAAGAAAAGGGGAGAGATATTCATCTTTACCATGTCCTTTGCCTCCGAAGAAAAAAAGAAAGAGCTATTCAAGGATGCATCCATTGACTGAAAAAGATAAAGCTATAGCTCTTCAGAGAGCAATTGCTTTCAAATCTGAAAAGCCTCACTTCAAAGTTGCCATGCAGCCCTCCTACATATTCGGCAATTTGGTAAATACCCTTGCACAAGTTTTGCCGGCGGGGTTTGCCAAGAGACATCTTATGCATCAGCCTCATGGTAATGCCATCCTTCGTCTTCCTGACGGAGGAACTTGGTGTGTTAAACTCAAATTATATAAACAACAGAAAGTACGATTCAAGCGTGGTTGGTTGGAATTTGTAAGGGACAATAATTTGAAAACTGGAGATGTGTGTGTGTTTATCTTGATTAAGGGCATTGAACTTGCATTTGAAGTTGTCTTTTACCGGGGTACAGAAGCTGCAAACTGCTCCTTGTCTCCAGGTTTACATGTAATAAGTTGTTATATTCGATTTGTGCTCAGTTACGAATGCATAACTTACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

324

Amino Acids

37.64

Weight (kDa)

9.11

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	15 - 106	1.2e-09	B3 DNA binding domain
B3	PF02362	211 - 280	1.1e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	644
AcoI	YGGCCR	2 cut(s)	14, 221
AcsI	RAATTY	3 cut(s)	101, 286, 779
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	756, 877
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflIII	ACRYGT	1 cut(s)	913
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	904
AluBI	AGCT	4 cut(s)	489, 527, 533, 884
AluI	AGCT	4 cut(s)	489, 527, 533, 884
Alw21I	GWGCWC	1 cut(s)	945
Alw26I	GTCTC	3 cut(s)	69, 652, 906
AlwNI	CAGNNNCTG	1 cut(s)	884
AoxI	GGCC	2 cut(s)	14, 221
ApeKI	GCWGC	2 cut(s)	589, 884
ApoI	RAATTY	3 cut(s)	101, 286, 779
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	295, 692
Bbv12I	GWGCWC	1 cut(s)	945
BbvI	GCAGC	2 cut(s)	601, 871
BccI	CCATC	1 cut(s)	698
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	906
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	3 cut(s)	69, 652, 906
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	2 cut(s)	590, 885
BlsI	GCNGC	2 cut(s)	591, 886
Bme1390I	CCNGG	2 cut(s)	872, 906
BmgBI	CACGTC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	872, 906
BmsI	GCATC	3 cut(s)	489, 511, 679
BpiI	GAAGAC	2 cut(s)	295, 692
BpmI	CTGGAG	2 cut(s)	828, 888
BpuMI	CCSGG	1 cut(s)	872
BsaBI	GATNNNNATC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	871
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	2 cut(s)	137, 811
Bse8I	GATNNNNATC	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	906
BseDI	CCNNGG	1 cut(s)	871
BseGI	GGATG	4 cut(s)	409, 502, 504, 690
BseJI	GATNNNNATC	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	2 cut(s)	173, 958
BseNI	ACTGG	2 cut(s)	137, 811
BseXI	GCAGC	2 cut(s)	601, 871
BshFI	GGCC	2 cut(s)	16, 223
BsiHKAI	GWGCWC	1 cut(s)	945
BsiSI	CCGG	4 cut(s)	224, 353, 641, 871
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	3 cut(s)	69, 652, 906
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	1 cut(s)	959
BsnI	GGCC	2 cut(s)	16, 223
Bsp1286I	GDGCHC	1 cut(s)	945
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	2 cut(s)	16, 223
BspCNI	CTCAG	2 cut(s)	174, 957
BspQI	GCTCTTC	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	137, 811
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	871
Bst2UI	CCWGG	1 cut(s)	906
Bst6I	CTCTTC	2 cut(s)	117, 540
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	146, 182, 944
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	4 cut(s)	409, 502, 504, 690
BstMAI	GTCTC	3 cut(s)	69, 652, 906
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	1 cut(s)	906
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	2 cut(s)	870, 904
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	601, 871
BstV2I	GAAGAC	2 cut(s)	295, 692
BsuRI	GGCC	2 cut(s)	16, 223
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	409, 502, 504, 690
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	884
Cfr10I	RCCGGY	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	755, 876
CviAII	CATG	6 cut(s)	156, 456, 586, 680, 914, 969
CviQI	GTAC	2 cut(s)	755, 876
DdeI	CTNAG	3 cut(s)	146, 182, 944
EaeI	YGGCCR	2 cut(s)	14, 221
Eam1104I	CTCTTC	2 cut(s)	117, 540
EarI	CTCTTC	2 cut(s)	117, 540
Eco57I	CTGAAG	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	904
EcoT22I	ATGCAT	3 cut(s)	504, 672, 959
FaeI	CATG	6 cut(s)	159, 459, 589, 683, 917, 972
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 557, 589
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	6 cut(s)	155, 455, 585, 679, 913, 968
FauI	CCCGC	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	590, 885
FokI	GGATG	4 cut(s)	416, 489, 511, 677
Fsp4HI	GCNGC	2 cut(s)	590, 885
GluI	GCNGC	2 cut(s)	590, 885
GsuI	CTGGAG	2 cut(s)	828, 888
HaeIII	GGCC	2 cut(s)	16, 223
HapII	CCGG	4 cut(s)	224, 353, 641, 871
Hin1II	CATG	6 cut(s)	159, 459, 589, 683, 917, 972
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	294, 386, 759
HpaII	CCGG	4 cut(s)	224, 353, 641, 871
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	334, 911
Hpy188I	TCNGA	5 cut(s)	96, 166, 471, 540, 562
Hpy188III	TCNNGA	5 cut(s)	59, 248, 291, 704, 829
Hpy8I	GTNNAC	2 cut(s)	334, 911
HpyAV	CCTTC	3 cut(s)	208, 275, 704
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	8 cut(s)	324, 502, 589, 629, 670, 851, 887, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	3 cut(s)	146, 182, 944
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	159, 459, 589, 683, 917, 972
KroI	GCCGGC	1 cut(s)	640
KroNI	GCCGGC	1 cut(s)	642
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	899
LpnPI	CCDG	9 cut(s)	150, 237, 366, 654, 717, 792, 884, 891, 918
Lsp1109I	GCAGC	2 cut(s)	601, 871
LweI	GCATC	3 cut(s)	489, 511, 679
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	947
MboII	GAAGA	9 cut(s)	134, 198, 295, 389, 435, 438, 484, 527, 692
MfeI	CAATTG	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	945
MluCI	AATT	8 cut(s)	101, 286, 347, 546, 610, 734, 779, 796
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	6 cut(s)	193, 477, 579, 604, 687, 704
Mph1103I	ATGCAT	3 cut(s)	504, 672, 959
MroNI	GCCGGC	1 cut(s)	640
MseI	TTAA	3 cut(s)	87, 726, 834
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	4 cut(s)	224, 353, 641, 871
MspR9I	CCNGG	2 cut(s)	872, 906
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	959
MvaI	CCWGG	1 cut(s)	906
MwoI	GCNNNNNNNGC	1 cut(s)	650
NaeI	GCCGGC	1 cut(s)	642
NciI	CCSGG	1 cut(s)	872
NgoMIV	GCCGGC	1 cut(s)	640
NlaIII	CATG	6 cut(s)	159, 459, 589, 683, 917, 972
NsiI	ATGCAT	3 cut(s)	504, 672, 959
NspI	RCATGY	1 cut(s)	917
PciI	ACATGT	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 763
PctI	GAATGC	1 cut(s)	959
PdiI	GCCGGC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	294, 759
PkrI	GCNGC	2 cut(s)	591, 886
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	913
Psp6I	CCWGG	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	904
PstNI	CAGNNNCTG	1 cut(s)	884
RsaI	GTAC	2 cut(s)	756, 877
RsaNI	GTAC	2 cut(s)	755, 876
RseI	CAYNNNNRTG	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	87, 726, 834
SatI	GCNGC	2 cut(s)	590, 885
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	872, 906
SduI	GDGCHC	1 cut(s)	945
SetI	ASST	7 cut(s)	204, 303, 491, 529, 535, 886, 910
SfaNI	GCATC	3 cut(s)	489, 511, 679
SfcI	CTRYAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	8 cut(s)	101, 286, 347, 546, 610, 734, 779, 796
SsiI	CCGC	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	870, 904
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	312, 934
TasI	AATT	8 cut(s)	101, 286, 347, 546, 610, 734, 779, 796
TfiI	GAWTC	2 cut(s)	294, 759
Tru1I	TTAA	3 cut(s)	87, 726, 834
Tru9I	TTAA	3 cut(s)	87, 726, 834
TseI	GCWGC	2 cut(s)	589, 884
TspDTI	ATGAA	6 cut(s)	15, 113, 125, 294, 295, 435
TspGWI	ACGGA	1 cut(s)	723
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	3 cut(s)	101, 286, 779
XceI	RCATGY	1 cut(s)	917
Zsp2I	ATGCAT	3 cut(s)	504, 672, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.