Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

47800921 .. 47802398

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTGCTTACTAAAACATTCCTTACCAGGGAAAGACCATTTCTCAGTGAAAAAAGAATGGGGAAGCACTTCTAGCACAAAGCGATTCCAAAAACAAACACCAGAGGTTCATTCAAAGGCTAATGTTTTCAAATCTCACAACTGCCCCTTCAGAATGGTCATCCGCCCCTCCTATTTCAATCAAAATCTTTTGTGGTTGCCTTCTGTGTTTGTCCGGACACATCTTATGAAGCAGCCAAGTAGTGTTATCCTTTGTGTTCCAGGTGGGAGTAAAACTTGGACGGTTGCATTGAATTATCAACAGAAAGCAAGAAGAGTCAGCTTCAACACTGGTTGGATTGAATTTCTGAGAGACAATAACGTGAAAGTTTGGGATGTTTGTGTGTTCATGTTGATTGATGAAATTAGACTTCTATTTGAAGTTGTCACAGAAGCTGCAAATTGCACCATGTCATCAGACACTGATGAACTTGATAATGAGGATAATGTGACTGAACTTGATGATGCTGATGACGATGAAGATGCAGATGATGATTCCATTGAAATATTGGACCATTTTCCATCATTCACAAAAGGAAAGGAGAAATTTGCATTACCATCTCAGCTTCATAAAAGAAGGAGAGCAACTTCTAGTACTAAAGCAGAAAGCACCATGAAACATGTAGGCGGCTGCTCCAAAACTCAAAAATTCCTAAAGCAAAGGCCTGAGGTCTCCAGAAGGATTCATCCAGTTATGGCAAGTATCGGAAGAGATTTAGCTTTTCAGAGAGCTACTGCTTTCAAACCTCCTCACCCTCACTTTGCAGTTTCAATAAAACCCTCATATATCCGTGGAAACTATCTGTGGGTGCCAACTGTGTTTGTTCATGGACATCTTATTAAGCGGCCTAGTGATGCCATCCTTAAGGTTTCAGATGGAGCAGGATGGCCTGTTTGCTTTCATTACAACAAAGCAAGAGCCACACTGCAAGGTGGTTTCGCTAAATTTGTGCGAGCCAACAATTTGAAAGCCGGTGATGCTTGTGTGTTTGTATTGACCAACAACATCAAATTCTTATTTGATGTTTTCATTTTCCGCACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

361

Amino Acids

41.11

Weight (kDa)

9.36

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	53 - 134	2.9e-14	B3 DNA binding domain
B3	PF02362	268 - 356	1.5e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	847
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	4 cut(s)	163, 666, 883, 1075
AcsI	RAATTY	5 cut(s)	341, 584, 686, 983, 1049
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	902
AflIII	ACRYGT	1 cut(s)	658
AjnI	CCWGG	2 cut(s)	25, 259
AluBI	AGCT	5 cut(s)	321, 434, 604, 758, 770
AluI	AGCT	5 cut(s)	321, 434, 604, 758, 770
Alw26I	GTCTC	2 cut(s)	345, 715
AlwNI	CAGNNNCTG	2 cut(s)	434, 461
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	3 cut(s)	701, 884, 926
ApeKI	GCWGC	3 cut(s)	232, 434, 669
ApoI	RAATTY	5 cut(s)	341, 584, 686, 983, 1049
Asp700I	GAANNNNTTC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	782, 1025
AvaII	GGWCC	1 cut(s)	550
AxyI	CCTNAGG	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	847
BbvI	GCAGC	3 cut(s)	244, 421, 656
BccI	CCATC	5 cut(s)	568, 604, 905, 908, 918
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	2 cut(s)	27, 261
BcoDI	GTCTC	2 cut(s)	345, 715
BfaI	CTAG	3 cut(s)	72, 630, 888
BfrI	CTTAAG	1 cut(s)	902
BisI	GCNGC	5 cut(s)	233, 435, 667, 670, 884
BlsI	GCNGC	5 cut(s)	234, 436, 668, 671, 885
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	27, 261
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	849
BmrFI	CCNGG	2 cut(s)	27, 261
BmsI	GCATC	4 cut(s)	493, 511, 883, 1006
BpmI	CTGGAG	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	715
BsaJI	CCNNGG	2 cut(s)	26, 829
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	1010
Bse1I	ACTGG	2 cut(s)	334, 728
Bse21I	CCTNAGG	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	27, 261
BseDI	CCNNGG	2 cut(s)	26, 829
BseGI	GGATG	5 cut(s)	159, 379, 724, 897, 929
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	57, 338, 614, 696
BseNI	ACTGG	2 cut(s)	334, 728
BseRI	GAGGAG	1 cut(s)	777
BseXI	GCAGC	3 cut(s)	244, 421, 656
BshFI	GGCC	3 cut(s)	703, 886, 928
BshNI	GGYRCC	1 cut(s)	847
BsiSI	CCGG	2 cut(s)	214, 1011
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	345, 715
BsnI	GGCC	3 cut(s)	703, 886, 928
Bso31I	GGTCTC	1 cut(s)	715
Bsp13I	TCCGGA	1 cut(s)	213
BspACI	CCGC	4 cut(s)	163, 666, 883, 1075
BspANI	GGCC	3 cut(s)	703, 886, 928
BspCNI	CTCAG	4 cut(s)	56, 339, 613, 697
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	849
BspT107I	GGYRCC	1 cut(s)	847
BspTI	CTTAAG	1 cut(s)	902
BspTNI	GGTCTC	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	1010
BsrI	ACTGG	2 cut(s)	334, 728
BssAI	RCCGGY	1 cut(s)	1010
BssECI	CCNNGG	2 cut(s)	26, 829
Bst2UI	CCWGG	2 cut(s)	27, 261
Bst4CI	ACNGT	2 cut(s)	283, 856
Bst6I	CTCTTC	2 cut(s)	307, 742
BstAFI	CTTAAG	1 cut(s)	902
BstC8I	GCNNGC	1 cut(s)	993
BstDEI	CTNAG	4 cut(s)	43, 347, 600, 705
BstDSI	CCRYGG	1 cut(s)	829
BstF5I	GGATG	5 cut(s)	159, 379, 724, 897, 929
BstMAI	GTCTC	2 cut(s)	345, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 1016
BstNI	CCWGG	2 cut(s)	27, 261
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	25, 259
BstV1I	GCAGC	3 cut(s)	244, 421, 656
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	703, 886, 928
BtgI	CCRYGG	1 cut(s)	829
BtsCI	GGATG	5 cut(s)	159, 379, 724, 897, 929
BtsI	GCAGTG	1 cut(s)	962
BtsIMutI	CAGTG	4 cut(s)	51, 327, 459, 962
Cac8I	GCNNGC	1 cut(s)	993
CaiI	CAGNNNCTG	2 cut(s)	434, 461
Cfr10I	RCCGGY	1 cut(s)	1010
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	5 cut(s)	388, 448, 652, 659, 866
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	4 cut(s)	43, 347, 600, 705
Eam1104I	CTCTTC	2 cut(s)	307, 742
EarI	CTCTTC	2 cut(s)	307, 742
EciI	GGCGGA	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	703
Eco31I	GGTCTC	1 cut(s)	715
Eco47I	GGWCC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	133
Eco81I	CCTNAGG	1 cut(s)	705
EcoRII	CCWGG	2 cut(s)	25, 259
FaeI	CATG	5 cut(s)	391, 451, 655, 662, 869
FatI	CATG	5 cut(s)	387, 447, 651, 658, 865
Fnu4HI	GCNGC	5 cut(s)	233, 435, 667, 670, 884
FokI	GGATG	5 cut(s)	146, 386, 711, 884, 936
Fsp4HI	GCNGC	5 cut(s)	233, 435, 667, 670, 884
FspBI	CTAG	3 cut(s)	72, 630, 888
GluI	GCNGC	5 cut(s)	233, 435, 667, 670, 884
GsuI	CTGGAG	1 cut(s)	697
HaeIII	GGCC	3 cut(s)	703, 886, 928
HapII	CCGG	2 cut(s)	214, 1011
Hin1II	CATG	5 cut(s)	391, 451, 655, 662, 869
HinfI	GANTC	4 cut(s)	84, 315, 533, 721
HpaII	CCGG	2 cut(s)	214, 1011
HphI	GGTGA	2 cut(s)	782, 1025
Hpy188I	TCNGA	6 cut(s)	152, 348, 457, 746, 765, 913
Hpy188III	TCNNGA	2 cut(s)	214, 714
HpyAV	CCTTC	4 cut(s)	157, 210, 609, 711
HpyCH4III	ACNGT	2 cut(s)	283, 856
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	7 cut(s)	287, 437, 444, 524, 590, 803, 967
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 1016
HpyF3I	CTNAG	4 cut(s)	43, 347, 600, 705
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	391, 451, 655, 662, 869
Kpn2I	TCCGGA	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	677, 917
Lsp1109I	GCAGC	3 cut(s)	244, 421, 656
LweI	GCATC	4 cut(s)	493, 511, 883, 1006
MaeI	CTAG	3 cut(s)	72, 630, 888
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	424, 487
MboII	GAAGA	3 cut(s)	324, 530, 759
MluCI	AATT	9 cut(s)	292, 341, 402, 439, 584, 686, 983, 1000, 1049
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	8 cut(s)	97, 178, 472, 700, 795, 798, 804, 829
MroI	TCCGGA	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	67
MseI	TTAA	2 cut(s)	879, 903
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	2 cut(s)	214, 1011
MspR9I	CCNGG	2 cut(s)	27, 261
MvaI	CCWGG	2 cut(s)	27, 261
MwoI	GCNNNNNNNGC	2 cut(s)	72, 1016
NlaIII	CATG	5 cut(s)	391, 451, 655, 662, 869
NlaIV	GGNNCC	1 cut(s)	849
NmuCI	GTSAC	2 cut(s)	424, 487
NspI	RCATGY	1 cut(s)	662
PceI	AGGCCT	1 cut(s)	703
PciI	ACATGT	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	84, 533, 721
PkrI	GCNGC	5 cut(s)	234, 436, 668, 671, 885
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PscI	ACATGT	1 cut(s)	658
Psp6I	CCWGG	2 cut(s)	25, 259
PspGI	CCWGG	2 cut(s)	25, 259
PspN4I	GGNNCC	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	550
PstNI	CAGNNNCTG	2 cut(s)	434, 461
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	879, 903
SatI	GCNGC	5 cut(s)	233, 435, 667, 670, 884
Sau96I	GGNCC	1 cut(s)	550
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	27, 261
SfaNI	GCATC	4 cut(s)	493, 511, 883, 1006
SinI	GGWCC	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
Sse9I	AATT	9 cut(s)	292, 341, 402, 439, 584, 686, 983, 1000, 1049
SseBI	AGGCCT	1 cut(s)	703
SsiI	CCGC	4 cut(s)	163, 666, 883, 1075
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	3 cut(s)	72, 630, 888
StuI	AGGCCT	1 cut(s)	703
StyD4I	CCNGG	2 cut(s)	25, 259
TaaI	ACNGT	2 cut(s)	283, 856
TaiI	ACGT	1 cut(s)	363
TasI	AATT	9 cut(s)	292, 341, 402, 439, 584, 686, 983, 1000, 1049
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	2 cut(s)	669, 886
TfiI	GAWTC	3 cut(s)	84, 533, 721
Tru1I	TTAA	2 cut(s)	879, 903
Tru9I	TTAA	2 cut(s)	879, 903
TscAI	CASTG	4 cut(s)	51, 334, 466, 969
TseFI	GTSAC	2 cut(s)	424, 487
TseI	GCWGC	3 cut(s)	232, 434, 669
Tsp45I	GTSAC	2 cut(s)	424, 487
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	4 cut(s)	51, 334, 466, 969
Vha464I	CTTAAG	1 cut(s)	902
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	5 cut(s)	341, 584, 686, 983, 1049
XceI	RCATGY	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	3 cut(s)	72, 630, 888
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.