Rmu_sc0001530.1_g000001

B3 domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001530.1
OG0000156
Physical Location & Seq
Reverse (-)
1194 .. 3212
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001530.1_g000001.1.cds

Sequence Viewer

Length: 1500 bp
atgcagggtattccaaagaaatttgtgaatgaatatggtcagtgtctatcaaattcagtatgtcttaagcttccaagtggctccgaatggaaagtagaagtgacaagaagcaatggaaaggtttggtttgagaagtgttggccagagttctcaaagttttactctcttagcatcggtgattttctagtttttgaatatgaaggggattctgaattccacgttttcatatttgatagaagcaccacagagattgactatcccataaaaaggcccaagatggaagaagctcctgaagatgaattctctgttgaaatcttggaggacattccacccagcccaaaaacaagggagaaaactccattaccgtgtcgtcaatcttacaagaaaatgaagacaagtttgactggtaaagcagaccagatgtttgaaaatgagaacaccgaaccttttgagaatccaaagaaaaacaaagattctcattgctctgcatcaaaaatcaaaagtgtaagtggttttccagcaaaaatagatggtggaggctcatctagcactgagaggtttttaaagcaatcacctgagttttgtggggagaagcatacatcaaatataaatgaaaaagccctaatacagagaagcattgcttccaaatctgaaaagccttatttcaaggttgtcatgcggcgctcatatattcaaaaaggttatttgtctgtgccatctgagttttccaagagacatcttacaaagaagcctgctactgtgatccttcaagttttggatggaagaacttggtccgttcaattgaagtatcatcatgaacgctcagaagctagattccagagttgttggccagtatttgtaagggagaataatttgaaagttggtgatgcatgtgtctttaccttaattaactgcattgcatttgtatttgaagtggtcttttatcctgccgcagaagctgcaaattgccccttgtcaccaggtggaagaggagcaatttatcaagtcaaaagtaagggaagtccaataatagaagtagaatctgaatgcggtgtgatatgtggaattggtgtatctggttctcttgaaactggcaagaacaaaatgtcaaagactagtgtgcaggttactgaaaggccctcttcatctttgacggctccattggataatcatcatgaagctgccaacaacttcgtctcagagaatccctttttcaaagtcactttgggttcctcccatatggagaagtcagttgtgcatgtaccagctagttttgcttggagtttcattaaaaggaagaaacaaaaagtgatgcttcaggtcacagatagattgtggcctgtggatttgatagcatttaagccatctttagcttcattttcttctggctgggccacatttgttgaggaatattcattaagagtcggagatgtttgcatatttgagcttatggagatgaatgatgacattatactacaagttcattttttcagatgttga

Protein Analysis

499

Amino Acids

56.4

Weight (kDa)

8.38

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1114
AciI CCGC 3 cut(s) 679, 951, 1050
AclWI GGATC 1 cut(s) 757
AcoI YGGCCR 2 cut(s) 140, 848
AcsI RAATTY 4 cut(s) 20, 52, 212, 299
AcuI CTGAAG 2 cut(s) 312, 1301
AdeI CACNNNGTG 1 cut(s) 983
AfaI GTAC 1 cut(s) 1263
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 1 cut(s) 65
AhlI ACTAGT 1 cut(s) 1115
AjnI CCWGG 1 cut(s) 979
AluBI AGCT 8 cut(s) 70, 287, 830, 959, 1181, 1268, 1373, 1447
AluI AGCT 8 cut(s) 70, 287, 830, 959, 1181, 1268, 1373, 1447
Alw26I GTCTC 2 cut(s) 727, 1201
AlwI GGATC 1 cut(s) 757
AlwNI CAGNNNCTG 1 cut(s) 959
AoxI GGCC 6 cut(s) 140, 269, 848, 1136, 1337, 1392
ApeKI GCWGC 2 cut(s) 959, 1181
ApoI RAATTY 4 cut(s) 20, 52, 212, 299
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 684
AspS9I GGNCC 4 cut(s) 270, 792, 1137, 1392
AsuHPI GGTGA 4 cut(s) 188, 564, 896, 969
AvaII GGWCC 1 cut(s) 792
BalI TGGCCA 2 cut(s) 142, 850
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 946, 1168
BccI CCATC 5 cut(s) 271, 524, 724, 773, 1372
BceAI ACGGC 1 cut(s) 1170
BciT130I CCWGG 1 cut(s) 981
BcoDI GTCTC 2 cut(s) 727, 1201
BcuI ACTAGT 1 cut(s) 1115
BfaI CTAG 5 cut(s) 185, 546, 831, 1116, 1269
BfoI RGCGCY 1 cut(s) 685
BfrI CTTAAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 1114
BisI GCNGC 4 cut(s) 680, 951, 960, 1182
BlsI GCNGC 4 cut(s) 681, 952, 961, 1183
Bme1390I CCNGG 1 cut(s) 981
Bme18I GGWCC 1 cut(s) 792
BmgT120I GGNCC 4 cut(s) 270, 792, 1137, 1392
BmiI GGNNCC 3 cut(s) 82, 1158, 1231
BmrFI CCNGG 1 cut(s) 981
BmsI GCATC 4 cut(s) 180, 497, 877, 1302
BpiI GAAGAC 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 1170
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 409, 851, 1096
Bse3DI GCAATG 4 cut(s) 118, 478, 636, 915
Bse8I GATNNNNATC 1 cut(s) 1170
BseBI CCWGG 1 cut(s) 981
BseGI GGATG 1 cut(s) 784
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 4 cut(s) 118, 478, 636, 915
BseMII CTCAG 5 cut(s) 543, 567, 711, 837, 1212
BseNI ACTGG 3 cut(s) 409, 851, 1096
BseRI GAGGAG 1 cut(s) 1005
BseXI GCAGC 2 cut(s) 946, 1168
BseYI CCCAGC 2 cut(s) 332, 1389
BsgI GTGCAG 1 cut(s) 1142
BshFI GGCC 6 cut(s) 142, 271, 850, 1138, 1339, 1394
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 727, 1201
BsmBI CGTCTC 1 cut(s) 1201
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 6 cut(s) 142, 271, 850, 1138, 1339, 1394
Bsp143I GATC 1 cut(s) 762
BspACI CCGC 3 cut(s) 679, 951, 1050
BspANI GGCC 6 cut(s) 142, 271, 850, 1138, 1339, 1394
BspCNI CTCAG 5 cut(s) 544, 568, 712, 836, 1211
BspHI TCATGA 2 cut(s) 814, 1174
BspLI GGNNCC 3 cut(s) 82, 1158, 1231
BspMI ACCTGC 1 cut(s) 1114
BspPI GGATC 1 cut(s) 757
BspTI CTTAAG 1 cut(s) 65
BsrDI GCAATG 4 cut(s) 118, 478, 636, 915
BsrI ACTGG 3 cut(s) 409, 851, 1096
BssMI GATC 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 981
Bst4CI ACNGT 2 cut(s) 366, 760
Bst6I CTCTTC 2 cut(s) 982, 1147
BstAFI CTTAAG 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 6 cut(s) 167, 552, 576, 720, 823, 1198
BstF5I GGATG 1 cut(s) 784
BstH2I RGCGCY 1 cut(s) 685
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 1 cut(s) 765
BstMAI GTCTC 2 cut(s) 727, 1201
BstMBI GATC 1 cut(s) 762
BstMWI GCNNNNNNNGC 4 cut(s) 546, 956, 959, 1274
BstNI CCWGG 1 cut(s) 981
BstNSI RCATGY 2 cut(s) 894, 1262
BstSCI CCNGG 1 cut(s) 979
BstV1I GCAGC 2 cut(s) 946, 1168
BstV2I GAAGAC 1 cut(s) 398
BsuRI GGCC 6 cut(s) 142, 271, 850, 1138, 1339, 1394
BtsCI GGATG 1 cut(s) 784
BtsIMutI CAGTG 2 cut(s) 47, 549
BveI ACCTGC 1 cut(s) 1114
Cac8I GCNNGC 1 cut(s) 753
CaiI CAGNNNCTG 1 cut(s) 959
CciI TCATGA 2 cut(s) 814, 1174
CfoI GCGC 1 cut(s) 684
Cfr13I GGNCC 4 cut(s) 270, 792, 1137, 1392
CsiI ACCWGGT 1 cut(s) 979
Csp6I GTAC 1 cut(s) 1262
CspCI CAANNNNNGTGG 4 cut(s) 232, 267, 1384, 1419
CviAII CATG 5 cut(s) 676, 815, 891, 1175, 1259
CviQI GTAC 1 cut(s) 1262
DdeI CTNAG 6 cut(s) 167, 552, 576, 720, 823, 1198
DpnI GATC 1 cut(s) 764
DpnII GATC 1 cut(s) 762
DraI TTTAAA 1 cut(s) 564
DraIII CACNNNGTG 1 cut(s) 983
EaeI YGGCCR 2 cut(s) 140, 848
Eam1104I CTCTTC 2 cut(s) 982, 1147
EarI CTCTTC 2 cut(s) 982, 1147
Eco47I GGWCC 1 cut(s) 792
Eco57I CTGAAG 2 cut(s) 312, 1301
EcoO109I RGGNCCY 1 cut(s) 1137
EcoRI GAATTC 2 cut(s) 212, 299
EcoRII CCWGG 1 cut(s) 979
EcoT22I ATGCAT 1 cut(s) 892
Esp3I CGTCTC 1 cut(s) 1201
FaeI CATG 5 cut(s) 679, 818, 894, 1178, 1262
FalI AAGNNNNNCTT 6 cut(s) 625, 657, 1126, 1158, 1299, 1331
FatI CATG 5 cut(s) 675, 814, 890, 1174, 1258
FauNDI CATATG 1 cut(s) 1239
Fnu4HI GCNGC 4 cut(s) 680, 951, 960, 1182
FokI GGATG 1 cut(s) 791
Fsp4HI GCNGC 4 cut(s) 680, 951, 960, 1182
FspBI CTAG 5 cut(s) 185, 546, 831, 1116, 1269
GlaI GCGC 1 cut(s) 683
GluI GCNGC 4 cut(s) 680, 951, 960, 1182
GsaI CCCAGC 2 cut(s) 336, 1393
HaeII RGCGCY 1 cut(s) 685
HaeIII GGCC 6 cut(s) 142, 271, 850, 1138, 1339, 1394
HhaI GCGC 1 cut(s) 684
Hin1II CATG 5 cut(s) 679, 818, 894, 1178, 1262
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 7 cut(s) 206, 454, 473, 834, 1040, 1204, 1422
HphI GGTGA 4 cut(s) 188, 564, 896, 969
Hpy188I TCNGA 9 cut(s) 85, 211, 652, 721, 826, 1045, 1201, 1427, 1493
Hpy188III TCNNGA 5 cut(s) 290, 815, 838, 1085, 1175
HpyAV CCTTC 2 cut(s) 194, 776
HpyCH4III ACNGT 2 cut(s) 366, 760
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 9 cut(s) 4, 488, 890, 915, 920, 962, 1123, 1258, 1437
HpyF10VI GCNNNNNNNGC 4 cut(s) 546, 956, 959, 1274
HpyF3I CTNAG 6 cut(s) 167, 552, 576, 720, 823, 1198
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 5 cut(s) 679, 818, 894, 1178, 1262
HspAI GCGC 1 cut(s) 682
Kzo9I GATC 1 cut(s) 762
LmnI GCTCC 4 cut(s) 86, 292, 992, 1162
Lsp1109I GCAGC 2 cut(s) 946, 1168
LweI GCATC 4 cut(s) 180, 497, 877, 1302
MabI ACCWGGT 1 cut(s) 979
MaeI CTAG 5 cut(s) 185, 546, 831, 1116, 1269
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 5 cut(s) 100, 975, 1126, 1219, 1321
MalI GATC 1 cut(s) 764
MboI GATC 1 cut(s) 762
MboII GAAGA 8 cut(s) 293, 305, 403, 795, 999, 1134, 1309, 1374
MfeI CAATTG 1 cut(s) 800
MlsI TGGCCA 2 cut(s) 142, 850
MluNI TGGCCA 2 cut(s) 142, 850
MlyI GAGTC 1 cut(s) 1431
MmeI TCCRAC 1 cut(s) 1405
MnlI CCTC 7 cut(s) 313, 530, 549, 983, 1150, 1243, 1399
Mox20I TGGCCA 2 cut(s) 142, 850
Mph1103I ATGCAT 1 cut(s) 892
MscI TGGCCA 2 cut(s) 142, 850
MseI TTAA 7 cut(s) 66, 563, 905, 909, 1290, 1359, 1418
MslI CAYNNNNRTG 1 cut(s) 364
Msp20I TGGCCA 2 cut(s) 142, 850
MspCI CTTAAG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 981
MunI CAATTG 1 cut(s) 800
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 1 cut(s) 981
MwoI GCNNNNNNNGC 4 cut(s) 546, 956, 959, 1274
NdeI CATATG 1 cut(s) 1239
NdeII GATC 1 cut(s) 762
NlaIII CATG 5 cut(s) 679, 818, 894, 1178, 1262
NlaIV GGNNCC 3 cut(s) 82, 1158, 1231
NmuCI GTSAC 4 cut(s) 100, 975, 1219, 1321
NsiI ATGCAT 1 cut(s) 892
NspI RCATGY 2 cut(s) 894, 1262
PacI TTAATTAA 1 cut(s) 909
PagI TCATGA 2 cut(s) 814, 1174
PctI GAATGC 1 cut(s) 1052
PfeI GAWTC 6 cut(s) 206, 454, 473, 834, 1040, 1204
PkrI GCNGC 4 cut(s) 681, 952, 961, 1183
PleI GAGTC 1 cut(s) 1430
PpsI GAGTC 1 cut(s) 1430
Psp6I CCWGG 1 cut(s) 979
PspFI CCCAGC 2 cut(s) 332, 1389
PspGI CCWGG 1 cut(s) 979
PspN4I GGNNCC 3 cut(s) 82, 1158, 1231
PspPI GGNCC 4 cut(s) 270, 792, 1137, 1392
PstNI CAGNNNCTG 1 cut(s) 959
RsaI GTAC 1 cut(s) 1263
RsaNI GTAC 1 cut(s) 1262
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 7 cut(s) 66, 563, 905, 909, 1290, 1359, 1418
SatI GCNGC 4 cut(s) 680, 951, 960, 1182
Sau3AI GATC 1 cut(s) 762
Sau96I GGNCC 4 cut(s) 270, 792, 1137, 1392
SchI GAGTC 1 cut(s) 1431
ScrFI CCNGG 1 cut(s) 981
SexAI ACCWGGT 1 cut(s) 979
SfaNI GCATC 4 cut(s) 180, 497, 877, 1302
SinI GGWCC 1 cut(s) 792
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 1115
SsiI CCGC 3 cut(s) 679, 951, 1050
SspI AATATT 1 cut(s) 1412
SspMI CTAG 5 cut(s) 185, 546, 831, 1116, 1269
StyD4I CCNGG 1 cut(s) 979
TaaI ACNGT 2 cut(s) 366, 760
TaiI ACGT 1 cut(s) 222
TauI GCSGC 2 cut(s) 682, 953
TfiI GAWTC 6 cut(s) 206, 454, 473, 834, 1040, 1204
Tru1I TTAA 7 cut(s) 66, 563, 905, 909, 1290, 1359, 1418
Tru9I TTAA 7 cut(s) 66, 563, 905, 909, 1290, 1359, 1418
TscAI CASTG 2 cut(s) 47, 556
TseFI GTSAC 4 cut(s) 100, 975, 1219, 1321
TseI GCWGC 2 cut(s) 959, 1181
Tsp45I GTSAC 4 cut(s) 100, 975, 1219, 1321
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 2 cut(s) 47, 556
Vha464I CTTAAG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 792
XapI RAATTY 4 cut(s) 20, 52, 212, 299
XceI RCATGY 2 cut(s) 894, 1262
XspI CTAG 5 cut(s) 185, 546, 831, 1116, 1269
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.