Rorug02G0320300

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000156
Physical Location & Seq
Reverse (-)
39205168 .. 39207407
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0320300.1

Sequence Viewer

Length: 702 bp
ATGCAGAGGTCGATTGCGAGTCTGGGTGGGTCCCTTGTCAAAAGCCGAGGGTTTAGCATGAGCTCGTCGCCGGAGAAAATCGTCGCGTCCGTACTGTTCGAGAGGCTCCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTCAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCAGATGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCTAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

233

Amino Acids

26.72

Weight (kDa)

9.07

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 427
AclWI GGATC 2 cut(s) 278, 370
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 3 cut(s) 93, 258, 407
AgsI TTSAA 2 cut(s) 556, 571
AluBI AGCT 6 cut(s) 63, 263, 281, 379, 671, 699
AluI AGCT 6 cut(s) 63, 263, 281, 379, 671, 699
Alw21I GWGCWC 2 cut(s) 65, 319
Alw26I GTCTC 3 cut(s) 231, 413, 579
AlwI GGATC 2 cut(s) 278, 370
AlwNI CAGNNNCTG 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 657
AspA2I CCTAGG 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 476, 643
AvaII GGWCC 1 cut(s) 30
AvrII CCTAGG 1 cut(s) 460
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 2 cut(s) 65, 319
BbvCI CCTCAGC 1 cut(s) 680
BccI CCATC 3 cut(s) 143, 556, 643
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 3 cut(s) 231, 413, 579
BfaI CTAG 3 cut(s) 225, 380, 461
BlnI CCTAGG 1 cut(s) 460
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 31, 32, 107
BmrFI CCNGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 110
BsaJI CCNNGG 4 cut(s) 46, 266, 460, 636
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 529, 559
Bse3DI GCAATG 3 cut(s) 305, 422, 522
BseDI CCNNGG 4 cut(s) 46, 266, 460, 636
BseGI GGATG 1 cut(s) 646
BseMI GCAATG 3 cut(s) 305, 422, 522
BseMII CTCAG 4 cut(s) 405, 654, 663, 694
BseRI GAGGAG 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 86
BsiHKAI GWGCWC 2 cut(s) 65, 319
BsiSI CCGG 2 cut(s) 71, 110
BslFI GGGAC 3 cut(s) 16, 457, 519
BsmAI GTCTC 3 cut(s) 231, 413, 579
BsmFI GGGAC 3 cut(s) 16, 457, 519
Bsp1286I GDGCHC 2 cut(s) 65, 319
Bsp143I GATC 4 cut(s) 270, 362, 466, 690
BspACI CCGC 1 cut(s) 427
BspCNI CTCAG 4 cut(s) 406, 655, 664, 693
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 31, 32, 107
BspPI GGATC 2 cut(s) 278, 370
BsrDI GCAATG 3 cut(s) 305, 422, 522
BssECI CCNNGG 4 cut(s) 46, 266, 460, 636
BssMI GATC 4 cut(s) 270, 362, 466, 690
BssT1I CCWWGG 2 cut(s) 460, 636
Bst4CI ACNGT 2 cut(s) 96, 453
BstAPI GCANNNNNTGC 1 cut(s) 443
BstDEI CTNAG 4 cut(s) 414, 663, 672, 680
BstDSI CCRYGG 1 cut(s) 266
BstEII GGTNACC 1 cut(s) 631
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 4 cut(s) 273, 365, 469, 693
BstMAI GTCTC 3 cut(s) 231, 413, 579
BstMBI GATC 4 cut(s) 270, 362, 466, 690
BstMWI GCNNNNNNNGC 2 cut(s) 385, 443
BstPI GGTNACC 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 2 cut(s) 75, 195
Csp6I GTAC 3 cut(s) 92, 257, 406
CviAII CATG 2 cut(s) 58, 359
CviJI RGCY 8 cut(s) 45, 63, 106, 263, 281, 379, 671, 699
CviKI_1 RGCY 8 cut(s) 45, 63, 106, 263, 281, 379, 671, 699
CviQI GTAC 3 cut(s) 92, 257, 406
DdeI CTNAG 4 cut(s) 414, 663, 672, 680
DpnI GATC 4 cut(s) 272, 364, 468, 692
DpnII GATC 4 cut(s) 270, 362, 466, 690
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 460, 636
Eco24I GRGCYC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 631
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 460, 636
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 460, 636
FaeI CATG 2 cut(s) 61, 362
FaiI YATR 8 cut(s) 59, 144, 255, 348, 360, 481, 503, 510
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 3 cut(s) 16, 457, 519
FatI CATG 2 cut(s) 57, 358
FbaI TGATCA 1 cut(s) 690
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 3 cut(s) 225, 380, 461
HapII CCGG 2 cut(s) 71, 110
HgaI GACGC 2 cut(s) 75, 195
Hin1II CATG 2 cut(s) 61, 362
HinfI GANTC 5 cut(s) 19, 410, 440, 521, 542
HpaII CCGG 2 cut(s) 71, 110
HphI GGTGA 2 cut(s) 476, 643
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 5 cut(s) 100, 152, 197, 395, 662
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 3 cut(s) 70, 86, 189
HpyCH4III ACNGT 2 cut(s) 96, 453
HpyCH4V TGCA 7 cut(s) 4, 146, 310, 437, 446, 515, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 443
HpyF3I CTNAG 4 cut(s) 414, 663, 672, 680
Hsp92II CATG 2 cut(s) 61, 362
KflI GGGWCCC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 4 cut(s) 270, 362, 466, 690
LmnI GCTCC 3 cut(s) 111, 268, 502
LpnPI CCDG 9 cut(s) 8, 84, 123, 137, 210, 273, 370, 408, 675
MaeI CTAG 3 cut(s) 225, 380, 461
MaeIII GTNAC 3 cut(s) 350, 535, 631
MalI GATC 4 cut(s) 272, 364, 468, 692
MboI GATC 4 cut(s) 270, 362, 466, 690
MboII GAAGA 2 cut(s) 329, 339
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 2 cut(s) 65, 319
MluCI AATT 4 cut(s) 246, 560, 603, 644
MlyI GAGTC 4 cut(s) 28, 419, 530, 536
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 5 cut(s) 41, 96, 409, 610, 689
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 1 cut(s) 599
MspI CCGG 2 cut(s) 71, 110
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 385, 443
NciI CCSGG 1 cut(s) 110
NdeII GATC 4 cut(s) 270, 362, 466, 690
NlaIII CATG 2 cut(s) 61, 362
NlaIV GGNNCC 3 cut(s) 31, 32, 107
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 2 cut(s) 535, 631
NsiI ATGCAT 1 cut(s) 148
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 135
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 1 cut(s) 440
PleI GAGTC 4 cut(s) 27, 418, 529, 536
PpsI GAGTC 4 cut(s) 27, 418, 529, 536
PpuMI RGGWCCY 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 631
PspN4I GGNNCC 3 cut(s) 31, 32, 107
PspPI GGNCC 1 cut(s) 30
PspPPI RGGWCCY 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 3 cut(s) 93, 258, 407
RsaNI GTAC 3 cut(s) 92, 257, 406
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 599
Sau3AI GATC 4 cut(s) 270, 362, 466, 690
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 4 cut(s) 28, 419, 530, 536
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 65, 319
SetI ASST 8 cut(s) 11, 65, 265, 283, 381, 466, 673, 701
SinI GGWCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 4 cut(s) 246, 560, 603, 644
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 656
SspMI CTAG 3 cut(s) 225, 380, 461
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 460, 636
TaaI ACNGT 2 cut(s) 96, 453
TaqI TCGA 4 cut(s) 11, 99, 129, 184
TaqII GACCGA 1 cut(s) 554
TasI AATT 4 cut(s) 246, 560, 603, 644
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 599
Tru9I TTAA 1 cut(s) 599
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 2 cut(s) 535, 631
Tsp45I GTSAC 2 cut(s) 535, 631
TspDTI ATGAA 2 cut(s) 216, 657
TspGWI ACGGA 2 cut(s) 79, 283
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 30
XmaJI CCTAGG 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 3 cut(s) 225, 380, 461
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.