Rorug02G0115200

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000156
Physical Location & Seq
Reverse (-)
9816572 .. 9818075
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0115200.1

Sequence Viewer

Length: 1221 bp
ATGGACGACACCGTCGACTGGTCCAATCTTCCAGTCGAACTTTGGCCACTGATCGGAGAAAAGCTCAAGCTCCGCATCGAGTCTCTCCGTTTCCGCAGCGTTTGCCATTCATGGCGTTCTTGTTTGCCTCGCTTCCACCCTTCACTTCCACCCAAATTCCCTCTCCCACTCTCCGATGGACCCACCTCCTTCCTCTCCCAAAACACCGTCTACCTCCTCCAGAGCCCCTCCACGTCATCACTGGCGGCGCCGTCGTCTGGAGGTTGGTTGGTCAAGGTCGAAGAGTGCGACGTCAGAATGCTTCTTCGGAATCCTATCACCTCCCGCCGAATCAGGTATTCAAACGACTCGTCGTTGTCTCCGGAATGTTTCAATTTGTTGGAGTTTAAAATGATCGAATTAGGGAAATCCTATTTTCTGAGATTCATCCGTGGCTCTGGTTCTGTTGATGTGTTAAAGAAAGTGATTTTAATGCCTCCTGAGATTGTTGATTGTGCAATTCTGGTTATCTGTGATAAAGGAAATTTGGGTTTTGCTAAGAGTGGAGATGAGAAACTCACAAAATTCAGTAATATTGGAGGTTTTGTTTTTGATGATGTATTTGTTTATAAGGGTCAGCCATATGTGGTGGATAGCTTGGGTTGTGTTTTTAGGATTGATGTGTCTTCAAAAGTGATGGTGAAAATTTCGTCGGAATTGGTTGGTTTAGGTGGGAGGAAGCATTTGGTGGAGTCTTGCGGAGAGCTTTATGTGGTCGATAGGTATTTTGATCAAGAACAAAATAAGCAAGAAGCGACTGGTCTTGAGTTGGATTTTTCTATTTGGGGCTTTCGTCGTCGTGGCAGATACCGGAGATATCATTCTGGTGAACCCAAGGTAGTTGATTTTAAGGTTTACAAGCTGGAACTGTTGGATGGAGAGTTGGGCAGATGGGTTGAAGTGGAAAGCTTGGGTGGTCAAGCGTTTTTCTTGGCTATAGATTGCTCTTTCTCTGTATTGGCTGAAGAATTAGCTGGGTGCAAAGGGAATTGCATTTACTTCTCAGATGAAAATGACGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTTGTGTTCAACTTAGAGGACCATAGCATTCAGAAGTTGGGATCTTCCCCAGGCGGTTCCGGATCCCAGATATATTGGCCACCTCCAATTGAGCTCGGCTCCATGTGTTCGTATTCTCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

406

Amino Acids

45.65

Weight (kDa)

5.61

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 66 - 353 4e-41 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AasI GACNNNNNNGTC 1 cut(s) 11
AatII GACGTC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 247
AccI GTMKAC 2 cut(s) 15, 210
AccIII TCCGGA 2 cut(s) 361, 1154
AciI CCGC 6 cut(s) 73, 94, 245, 325, 738, 1149
AclWI GGATC 3 cut(s) 1144, 1152, 1165
AcoI YGGCCR 2 cut(s) 44, 1172
AcsI RAATTY 4 cut(s) 155, 523, 563, 684
AcuI CTGAAG 1 cut(s) 1023
AcyI GRCGYC 2 cut(s) 248, 291
AfiI CCNNNNNNNGG 3 cut(s) 18, 53, 257
AgsI TTSAA 5 cut(s) 342, 373, 669, 938, 1105
AjiI CACGTC 1 cut(s) 234
AjnI CCWGG 1 cut(s) 1144
AluBI AGCT 8 cut(s) 64, 70, 636, 745, 901, 948, 1013, 1189
AluI AGCT 8 cut(s) 64, 70, 636, 745, 901, 948, 1013, 1189
Alw21I GWGCWC 1 cut(s) 1191
Alw26I GTCTC 2 cut(s) 87, 363
AlwI GGATC 3 cut(s) 1144, 1152, 1165
Aor13HI TCCGGA 2 cut(s) 361, 1154
AoxI GGCC 2 cut(s) 44, 1172
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 4 cut(s) 155, 523, 563, 684
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 3 cut(s) 21, 179, 1114
AsuHPI GGTGA 3 cut(s) 310, 691, 878
AvaII GGWCC 3 cut(s) 21, 179, 1114
BalI TGGCCA 2 cut(s) 46, 1174
BamHI GGATCC 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 2 cut(s) 227, 1191
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 1191
BbvI GCAGC 1 cut(s) 108
BccI CCATC 4 cut(s) 170, 670, 908, 924
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 1146
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 2 cut(s) 87, 363
BfaI CTAG 1 cut(s) 1083
BfmI CTRYAG 1 cut(s) 975
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 2 cut(s) 97, 246
BlsI GCNGC 2 cut(s) 98, 247
Bme1390I CCNGG 1 cut(s) 1146
Bme18I GGWCC 3 cut(s) 21, 179, 1114
BmgBI CACGTC 1 cut(s) 234
BmgT120I GGNCC 3 cut(s) 21, 179, 1114
BmiI GGNNCC 5 cut(s) 181, 249, 1153, 1159, 1195
BmrFI CCNGG 1 cut(s) 1146
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 657
BplI GAGNNNNNCTC 4 cut(s) 48, 80, 1178, 1210
BpmI CTGGAG 2 cut(s) 203, 279
BpuEI CTTGAG 2 cut(s) 50, 824
BsaHI GRCGYC 2 cut(s) 248, 291
BsaJI CCNNGG 3 cut(s) 430, 873, 1144
BsaWI WCCGGW 3 cut(s) 361, 849, 1154
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 53, 257
Bse1I ACTGG 4 cut(s) 23, 32, 246, 802
BseAI TCCGGA 2 cut(s) 361, 1154
BseBI CCWGG 1 cut(s) 1146
BseDI CCNNGG 3 cut(s) 430, 873, 1144
BseGI GGATG 2 cut(s) 426, 919
BseLI CCNNNNNNNGG 3 cut(s) 18, 53, 257
BseMII CTCAG 3 cut(s) 410, 471, 1056
BseNI ACTGG 4 cut(s) 23, 32, 246, 802
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 1013
BshFI GGCC 2 cut(s) 46, 1174
BshNI GGYRCC 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 1191
BsiSI CCGG 3 cut(s) 362, 850, 1155
BslI CCNNNNNNNGG 3 cut(s) 18, 53, 257
BsmAI GTCTC 2 cut(s) 87, 363
BsmI GAATGC 2 cut(s) 303, 1122
BsnI GGCC 2 cut(s) 46, 1174
Bsp1286I GDGCHC 2 cut(s) 227, 1191
Bsp13I TCCGGA 2 cut(s) 361, 1154
Bsp143I GATC 5 cut(s) 51, 393, 769, 1136, 1157
BspACI CCGC 6 cut(s) 73, 94, 245, 325, 738, 1149
BspANI GGCC 2 cut(s) 46, 1174
BspCNI CTCAG 3 cut(s) 411, 472, 1055
BspEI TCCGGA 2 cut(s) 361, 1154
BspLI GGNNCC 5 cut(s) 181, 249, 1153, 1159, 1195
BspPI GGATC 3 cut(s) 1144, 1152, 1165
BspT107I GGYRCC 1 cut(s) 247
BsrI ACTGG 4 cut(s) 23, 32, 246, 802
BssECI CCNNGG 3 cut(s) 430, 873, 1144
BssMI GATC 5 cut(s) 51, 393, 769, 1136, 1157
BssNI GRCGYC 2 cut(s) 248, 291
BssT1I CCWWGG 1 cut(s) 873
Bst2UI CCWGG 1 cut(s) 1146
Bst4CI ACNGT 3 cut(s) 13, 208, 909
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 2 cut(s) 248, 291
BstAPI GCANNNNNTGC 1 cut(s) 102
BstDEI CTNAG 6 cut(s) 419, 480, 537, 1042, 1070, 1108
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 2 cut(s) 426, 919
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 5 cut(s) 54, 396, 772, 1139, 1160
BstMAI GTCTC 2 cut(s) 87, 363
BstMBI GATC 5 cut(s) 51, 393, 769, 1136, 1157
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 1146
BstSCI CCNGG 1 cut(s) 1144
BstSFI CTRYAG 1 cut(s) 975
BstV1I GCAGC 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 2 cut(s) 1136, 1157
BstYI RGATCY 2 cut(s) 1136, 1157
BsuRI GGCC 2 cut(s) 46, 1174
BtgI CCRYGG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 426, 919
BtsIMutI CAGTG 2 cut(s) 47, 239
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 21, 179, 1114
CviAII CATG 2 cut(s) 111, 1198
DdeI CTNAG 6 cut(s) 419, 480, 537, 1042, 1070, 1108
DinI GGCGCC 1 cut(s) 249
DpnI GATC 5 cut(s) 53, 395, 771, 1138, 1159
DpnII GATC 5 cut(s) 51, 393, 769, 1136, 1157
DraI TTTAAA 1 cut(s) 388
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 2 cut(s) 44, 1172
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 1189
Eco130I CCWWGG 1 cut(s) 873
Eco24I GRGCYC 2 cut(s) 227, 1191
Eco32I GATATC 1 cut(s) 857
Eco47I GGWCC 3 cut(s) 21, 179, 1114
Eco53kI GAGCTC 1 cut(s) 1189
Eco57I CTGAAG 1 cut(s) 1023
EcoICRI GAGCTC 1 cut(s) 1189
EcoRII CCWGG 1 cut(s) 1144
EcoRV GATATC 1 cut(s) 857
EcoT14I CCWWGG 1 cut(s) 873
EcoT38I GRGCYC 2 cut(s) 227, 1191
EgeI GGCGCC 1 cut(s) 249
EheI GGCGCC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 2 cut(s) 114, 1201
FaiI YATR 9 cut(s) 112, 609, 622, 624, 750, 977, 1119, 1168, 1199
FatI CATG 2 cut(s) 110, 1197
FauI CCCGC 1 cut(s) 332
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 2 cut(s) 15, 210
Fnu4HI GCNGC 2 cut(s) 97, 246
FokI GGATG 2 cut(s) 413, 926
FriOI GRGCYC 2 cut(s) 227, 1191
Fsp4HI GCNGC 2 cut(s) 97, 246
FspBI CTAG 1 cut(s) 1083
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 97, 246
GsaI CCCAGC 1 cut(s) 1017
GsuI CTGGAG 2 cut(s) 203, 279
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 2 cut(s) 46, 1174
HapII CCGG 3 cut(s) 362, 850, 1155
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 2 cut(s) 248, 291
Hin1II CATG 2 cut(s) 114, 1201
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 946
HinfI GANTC 6 cut(s) 80, 310, 330, 347, 423, 731
HpaII CCGG 3 cut(s) 362, 850, 1155
HphI GGTGA 3 cut(s) 310, 691, 878
Hpy166II GTNNAC 4 cut(s) 16, 211, 869, 895
Hpy188I TCNGA 8 cut(s) 56, 175, 296, 309, 420, 694, 1045, 1128
Hpy188III TCNNGA 8 cut(s) 220, 258, 362, 479, 773, 803, 1155, 1214
Hpy8I GTNNAC 4 cut(s) 16, 211, 869, 895
Hpy99I CGWCG 7 cut(s) 17, 256, 293, 355, 694, 837, 840
HpyAV CCTTC 2 cut(s) 150, 199
HpyCH4III ACNGT 3 cut(s) 13, 208, 909
HpyCH4IV ACGT 3 cut(s) 233, 291, 1056
HpyCH4V TGCA 3 cut(s) 497, 1020, 1032
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 6 cut(s) 419, 480, 537, 1042, 1070, 1108
HpySE526I ACGT 3 cut(s) 233, 291, 1056
Hsp92I GRCGYC 2 cut(s) 248, 291
Hsp92II CATG 2 cut(s) 114, 1201
HspAI GCGC 1 cut(s) 248
KasI GGCGCC 1 cut(s) 247
Kpn2I TCCGGA 2 cut(s) 361, 1154
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 5 cut(s) 51, 393, 769, 1136, 1157
LmnI GCTCC 2 cut(s) 75, 1199
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 1083
MaeII ACGT 3 cut(s) 233, 291, 1056
MaeIII GTNAC 1 cut(s) 1078
MalI GATC 5 cut(s) 53, 395, 771, 1138, 1159
MboI GATC 5 cut(s) 51, 393, 769, 1136, 1157
MboII GAAGA 6 cut(s) 20, 293, 296, 657, 1016, 1131
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 2 cut(s) 1136, 1157
MhlI GDGCHC 2 cut(s) 227, 1191
MlsI TGGCCA 2 cut(s) 46, 1174
MluNI TGGCCA 2 cut(s) 46, 1174
Mly113I GGCGCC 1 cut(s) 248
MlyI GAGTC 3 cut(s) 89, 341, 740
MmeI TCCRAC 4 cut(s) 360, 672, 789, 891
Mox20I TGGCCA 2 cut(s) 46, 1174
MroI TCCGGA 2 cut(s) 361, 1154
MscI TGGCCA 2 cut(s) 46, 1174
MseI TTAA 5 cut(s) 387, 455, 470, 888, 1059
MslI CAYNNNNRTG 1 cut(s) 864
Msp20I TGGCCA 2 cut(s) 46, 1174
MspI CCGG 3 cut(s) 362, 850, 1155
MspR9I CCNGG 1 cut(s) 1146
MunI CAATTG 1 cut(s) 1182
Mva1269I GAATGC 2 cut(s) 303, 1122
MvaI CCWGG 1 cut(s) 1146
MwoI GCNNNNNNNGC 1 cut(s) 102
NarI GGCGCC 1 cut(s) 248
NdeI CATATG 1 cut(s) 622
NdeII GATC 5 cut(s) 51, 393, 769, 1136, 1157
NlaIII CATG 2 cut(s) 114, 1201
NlaIV GGNNCC 5 cut(s) 181, 249, 1153, 1159, 1195
NmeAIII GCCGAG 1 cut(s) 1170
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 285
PctI GAATGC 2 cut(s) 303, 1122
PfeI GAWTC 3 cut(s) 310, 330, 423
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 98, 247
PleI GAGTC 3 cut(s) 88, 341, 739
PluTI GGCGCC 1 cut(s) 251
PpsI GAGTC 3 cut(s) 88, 341, 739
PsiI TTATAA 1 cut(s) 609
Psp124BI GAGCTC 1 cut(s) 1191
Psp6I CCWGG 1 cut(s) 1144
PspFI CCCAGC 1 cut(s) 1013
PspGI CCWGG 1 cut(s) 1144
PspN4I GGNNCC 5 cut(s) 181, 249, 1153, 1159, 1195
PspPI GGNCC 3 cut(s) 21, 179, 1114
PsuI RGATCY 2 cut(s) 1136, 1157
PsyI GACNNNGTC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 864
SacI GAGCTC 1 cut(s) 1191
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 5 cut(s) 387, 455, 470, 888, 1059
SatI GCNGC 2 cut(s) 97, 246
Sau3AI GATC 5 cut(s) 51, 393, 769, 1136, 1157
Sau96I GGNCC 3 cut(s) 21, 179, 1114
SchI GAGTC 3 cut(s) 89, 341, 740
ScrFI CCNGG 1 cut(s) 1146
SduI GDGCHC 2 cut(s) 227, 1191
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 975
SfoI GGCGCC 1 cut(s) 249
SinI GGWCC 3 cut(s) 21, 179, 1114
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 2 cut(s) 65, 803
SmoI CTYRAG 2 cut(s) 65, 803
SsiI CCGC 6 cut(s) 73, 94, 245, 325, 738, 1149
SspDI GGCGCC 1 cut(s) 247
SspI AATATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 1083
SstI GAGCTC 1 cut(s) 1191
StyD4I CCNGG 1 cut(s) 1144
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 3 cut(s) 13, 208, 909
TaiI ACGT 3 cut(s) 236, 294, 1059
TaqI TCGA 6 cut(s) 15, 36, 78, 279, 396, 756
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 3 cut(s) 310, 330, 423
Tru1I TTAA 5 cut(s) 387, 455, 470, 888, 1059
Tru9I TTAA 5 cut(s) 387, 455, 470, 888, 1059
TscAI CASTG 2 cut(s) 54, 246
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 3 cut(s) 99, 415, 1062
TspGWI ACGGA 2 cut(s) 77, 419
TspRI CASTG 2 cut(s) 54, 246
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 3 cut(s) 21, 179, 1114
XapI RAATTY 4 cut(s) 155, 523, 563, 684
XcmI CCANNNNNNNNNTGG 2 cut(s) 39, 238
XmiI GTMKAC 2 cut(s) 15, 210
XspI CTAG 1 cut(s) 1083
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.