Prupe.7G143500_v2.0.a1

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000156
Physical Location & Seq
Forward (+)
15783835 .. 15786650
2816 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G143500.1

Sequence Viewer

Length: 1074 bp
ATGGCTTCTCTTCATGACACTCCAACATCTTCAGCTCCCATACCCCACTTCTTCAAGATCATTCTAGATGACACTTCTAAAAACATCAGAATTAAAATTCCAATGAAGTTTGTGATGAAATATGGAGAACATTTATCAAGTCCAGTACATCTTAAACTTCCAAATGGTGCAGAATGGGAAATAGAACTCAGAAGATGCAACAATGGTGGGGTTTGGTTTGACAAGGGTTGGCCGGAGTTCTCCAAGTTTTGCTCTCTTGACTACGGTAATTGGCTAGTCTTTGGATACGAAGGGAACTCAAACTTCCATGTTTTAATATTTGATAGAACATCTACTGAGGTTGAATATGCCATAACAAAGCCCGAAATGGAAGAAACTGATTATGAAGAAGAAGATGATAACTCTGTAGAAATCTTGGATGGTTTTCCACCCTGCCCAAGAAAGGCAAGGGAGAAATCTCCATTGCCATGTCCTCAGCCGCACAAGAAAATGAGAACATGTGGTAAAGCAGAATGCAACATCAACTTTAGACCAACAAAGACTCAAACTTCTCTGAGAAACAAAGCCTCAGATTCCTCAAGATCAGAAATGAAAAAGGAAGATGAATCAGATGATGATTCTGTTGAAACATTGGACGCGTTTCCCTCCTGCCCAAAAACAAGGGACAAATCTCCATTAGCACCATCAGAGGTCAAAGATCGTGTTGGGAGGATGCATGCATCAACTACATGTGGAAAATCCATAGCTCTTCAGAGAGCTATTGCTTTTGAATCTGTAAGCCCTTCTTTTACTGTTGTCATGCAGCCATCGTACATCCCATACGGTCCTTTGACTCTGCCAATTAGGTTTGCCCGGAGTTTCGTCAAACTGAGGAAGCAAACCGCGACTCTTCAGGTTAGAGAGAGATCGTGGCCTGTGAATTTGATTGGTTGGACTAAAGAATCATCAGCTAAACTTTCTGGTGGCTGGCCTGCATTTGCGACGGAAAATTGTTTGAGGAGAGGAGATGTTTGTACGTTTGAGCTCATCGAGAGAAACGACATTGTACTGAAAGTTCACATTTTCAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

358

Amino Acids

40.61

Weight (kDa)

7.98

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 638, 884
AciI CCGC 2 cut(s) 479, 882
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 2 cut(s) 96, 919
AcuI CTGAAG 3 cut(s) 15, 734, 875
AfaI GTAC 4 cut(s) 147, 812, 1015, 1047
AfiI CCNNNNNNNGG 1 cut(s) 442
AflIII ACRYGT 3 cut(s) 497, 636, 728
AgsI TTSAA 4 cut(s) 55, 344, 626, 770
AluBI AGCT 5 cut(s) 35, 746, 758, 950, 1024
AluI AGCT 5 cut(s) 35, 746, 758, 950, 1024
Alw21I GWGCWC 1 cut(s) 1026
AoxI GGCC 3 cut(s) 230, 911, 968
ApeKI GCWGC 1 cut(s) 802
ApoI RAATTY 2 cut(s) 96, 919
AspS9I GGNCC 1 cut(s) 824
AsuC2I CCSGG 1 cut(s) 853
AvaII GGWCC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 1026
Bbv12I GWGCWC 1 cut(s) 1026
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 814
BccI CCATC 3 cut(s) 413, 691, 814
BciVI GTATCC 1 cut(s) 278
BcnI CCSGG 1 cut(s) 853
BfaI CTAG 2 cut(s) 65, 275
BfmI CTRYAG 1 cut(s) 405
BfuI GTATCC 1 cut(s) 278
BisI GCNGC 2 cut(s) 479, 803
BlsI GCNGC 2 cut(s) 480, 804
Bme1390I CCNGG 1 cut(s) 853
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 824
BmrFI CCNGG 1 cut(s) 853
BmsI GCATC 3 cut(s) 185, 702, 728
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 562
BpuMI CCSGG 1 cut(s) 853
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 461
BseGI GGATG 3 cut(s) 424, 717, 813
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 6 cut(s) 202, 327, 488, 545, 582, 860
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 1012, 1017
BseXI GCAGC 1 cut(s) 814
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 2 cut(s) 638, 884
BshFI GGCC 3 cut(s) 232, 913, 970
BsiHKAI GWGCWC 1 cut(s) 1026
BsiSI CCGG 2 cut(s) 233, 853
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 3 cut(s) 232, 913, 970
Bsp1286I GDGCHC 1 cut(s) 1026
Bsp143I GATC 4 cut(s) 57, 581, 697, 905
BspACI CCGC 2 cut(s) 479, 882
BspANI GGCC 3 cut(s) 232, 913, 970
BspCNI CTCAG 6 cut(s) 201, 328, 487, 546, 581, 861
BspFNI CGCG 2 cut(s) 638, 884
BspHI TCATGA 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 753
BsrDI GCAATG 1 cut(s) 461
BsrI ACTGG 1 cut(s) 143
BssMI GATC 4 cut(s) 57, 581, 697, 905
Bst4CI ACNGT 3 cut(s) 266, 793, 824
Bst6I CTCTTC 3 cut(s) 15, 753, 894
BstC8I GCNNGC 3 cut(s) 717, 968, 972
BstDEI CTNAG 6 cut(s) 188, 336, 474, 554, 568, 869
BstF5I GGATG 3 cut(s) 424, 717, 813
BstFNI CGCG 2 cut(s) 638, 884
BstKTI GATC 4 cut(s) 60, 584, 700, 908
BstMBI GATC 4 cut(s) 57, 581, 697, 905
BstNSI RCATGY 3 cut(s) 501, 719, 732
BstSCI CCNGG 1 cut(s) 851
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 2 cut(s) 638, 884
BstV1I GCAGC 1 cut(s) 814
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 3 cut(s) 232, 913, 970
BtsCI GGATG 3 cut(s) 424, 717, 813
Cac8I GCNNGC 3 cut(s) 717, 968, 972
CciI TCATGA 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 824
CseI GACGC 1 cut(s) 644
Csp6I GTAC 4 cut(s) 146, 811, 1014, 1046
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 7 cut(s) 14, 308, 468, 498, 716, 729, 799
CviQI GTAC 4 cut(s) 146, 811, 1014, 1046
DdeI CTNAG 6 cut(s) 188, 336, 474, 554, 568, 869
DpnI GATC 4 cut(s) 59, 583, 699, 907
DpnII GATC 4 cut(s) 57, 581, 697, 905
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 3 cut(s) 15, 753, 894
EarI CTCTTC 3 cut(s) 15, 753, 894
Ecl136II GAGCTC 1 cut(s) 1024
Eco24I GRGCYC 1 cut(s) 1026
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 1024
Eco57I CTGAAG 3 cut(s) 15, 734, 875
EcoICRI GAGCTC 1 cut(s) 1024
EcoT22I ATGCAT 2 cut(s) 717, 721
EcoT38I GRGCYC 1 cut(s) 1026
FaeI CATG 7 cut(s) 17, 311, 471, 501, 719, 732, 802
FalI AAGNNNNNCTT 2 cut(s) 769, 801
FaqI GGGAC 1 cut(s) 677
FatI CATG 7 cut(s) 13, 307, 467, 497, 715, 728, 798
Fnu4HI GCNGC 2 cut(s) 479, 803
FokI GGATG 3 cut(s) 431, 724, 800
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 2 cut(s) 479, 803
FspBI CTAG 2 cut(s) 65, 275
GluI GCNGC 2 cut(s) 479, 803
HaeIII GGCC 3 cut(s) 232, 913, 970
HapII CCGG 2 cut(s) 233, 853
HgaI GACGC 1 cut(s) 644
Hin1II CATG 7 cut(s) 17, 311, 471, 501, 719, 732, 802
HinfI GANTC 8 cut(s) 541, 572, 605, 617, 770, 832, 886, 941
HpaII CCGG 2 cut(s) 233, 853
Hpy166II GTNNAC 1 cut(s) 1057
Hpy188I TCNGA 9 cut(s) 89, 191, 555, 571, 586, 610, 688, 753, 1067
Hpy188III TCNNGA 6 cut(s) 14, 55, 65, 257, 579, 1030
Hpy8I GTNNAC 1 cut(s) 1057
Hpy99I CGWCG 1 cut(s) 985
HpyAV CCTTC 2 cut(s) 284, 792
HpyCH4III ACNGT 3 cut(s) 266, 793, 824
HpyCH4IV ACGT 1 cut(s) 1016
HpyCH4V TGCA 7 cut(s) 170, 198, 516, 715, 719, 802, 974
HpyF3I CTNAG 6 cut(s) 188, 336, 474, 554, 568, 869
HpySE526I ACGT 1 cut(s) 1016
Hsp92II CATG 7 cut(s) 17, 311, 471, 501, 719, 732, 802
Kzo9I GATC 4 cut(s) 57, 581, 697, 905
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 1 cut(s) 814
LweI GCATC 3 cut(s) 185, 702, 728
MaeI CTAG 2 cut(s) 65, 275
MaeII ACGT 1 cut(s) 1016
MalI GATC 4 cut(s) 59, 583, 699, 907
MboI GATC 4 cut(s) 57, 581, 697, 905
MhlI GDGCHC 1 cut(s) 1026
MluCI AATT 7 cut(s) 90, 96, 268, 840, 919, 988, 1069
MluI ACGCGT 1 cut(s) 636
MlyI GAGTC 3 cut(s) 535, 826, 880
MmeI TCCRAC 2 cut(s) 47, 911
Mph1103I ATGCAT 2 cut(s) 717, 721
MseI TTAA 3 cut(s) 93, 153, 314
MslI CAYNNNNRTG 1 cut(s) 466
MspI CCGG 2 cut(s) 233, 853
MspR9I CCNGG 1 cut(s) 853
Mva1269I GAATGC 1 cut(s) 518
MvnI CGCG 2 cut(s) 638, 884
NciI CCSGG 1 cut(s) 853
NdeII GATC 4 cut(s) 57, 581, 697, 905
NlaIII CATG 7 cut(s) 17, 311, 471, 501, 719, 732, 802
NsiI ATGCAT 2 cut(s) 717, 721
NspI RCATGY 3 cut(s) 501, 719, 732
PaeI GCATGC 1 cut(s) 719
PagI TCATGA 1 cut(s) 13
PciI ACATGT 2 cut(s) 497, 728
PciSI GCTCTTC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 1035
PctI GAATGC 1 cut(s) 518
PfeI GAWTC 5 cut(s) 572, 605, 617, 770, 941
PkrI GCNGC 2 cut(s) 480, 804
PleI GAGTC 3 cut(s) 535, 826, 880
PpsI GAGTC 3 cut(s) 535, 826, 880
PscI ACATGT 2 cut(s) 497, 728
Psp124BI GAGCTC 1 cut(s) 1026
PspPI GGNCC 1 cut(s) 824
PsrI GAACNNNNNNTAC 2 cut(s) 1038, 1070
RsaI GTAC 4 cut(s) 147, 812, 1015, 1047
RsaNI GTAC 4 cut(s) 146, 811, 1014, 1046
RseI CAYNNNNRTG 1 cut(s) 466
SacI GAGCTC 1 cut(s) 1026
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 3 cut(s) 93, 153, 314
SatI GCNGC 2 cut(s) 479, 803
Sau3AI GATC 4 cut(s) 57, 581, 697, 905
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 3 cut(s) 535, 826, 880
ScrFI CCNGG 1 cut(s) 853
SduI GDGCHC 1 cut(s) 1026
SfaNI GCATC 3 cut(s) 185, 702, 728
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 1 cut(s) 824
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
SphI GCATGC 1 cut(s) 719
Sse9I AATT 7 cut(s) 90, 96, 268, 840, 919, 988, 1069
SsiI CCGC 2 cut(s) 479, 882
SspI AATATT 1 cut(s) 318
SspMI CTAG 2 cut(s) 65, 275
SstI GAGCTC 1 cut(s) 1026
StyD4I CCNGG 1 cut(s) 851
TaaI ACNGT 3 cut(s) 266, 793, 824
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 1 cut(s) 1029
TasI AATT 7 cut(s) 90, 96, 268, 840, 919, 988, 1069
TatI WGTACW 2 cut(s) 145, 1045
TauI GCSGC 1 cut(s) 481
TfiI GAWTC 5 cut(s) 572, 605, 617, 770, 941
Tru1I TTAA 3 cut(s) 93, 153, 314
Tru9I TTAA 3 cut(s) 93, 153, 314
TseI GCWGC 1 cut(s) 802
TspDTI ATGAA 5 cut(s) 119, 131, 399, 605, 618
TspGWI ACGGA 1 cut(s) 998
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 2 cut(s) 96, 919
XbaI TCTAGA 1 cut(s) 64
XceI RCATGY 3 cut(s) 501, 719, 732
XspI CTAG 2 cut(s) 65, 275
Zsp2I ATGCAT 2 cut(s) 717, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.