Rmu_sc0001530.1_g000002

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001530.1
OG0000156
Physical Location & Seq
Forward (+)
3591 .. 4447
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001530.1_g000002.1.cds

Sequence Viewer

Length: 747 bp
atgcagggtattccaaagaaatttgtgaatgaatatggtcagtgtctatcaaattcagtatgtcttaagcttccaagtggctccgaatggaaagtagaagtgacaagaagcaatggaaaggtttggtttgagaagtgttggccagagttctcaaagttttactctcttagcatcggtgattttctagtttttgaatatgaaggggattctgaattccacgttttcatatttgatagaagcaccacagagattgactatcccataaaaaggcccaagatggaagaagctcctgaagatgaattctctgttgaaatcttggaggacattccacccagcccaaaaacaagggagaaaactccattaccgtgtcgtcaatcttacaagaaaatgaagacaagtttgactggtaaagcagaccagatgtttgaaaatgagaacaccgaaccttttgggaatccaaagaaaaacaaagattctcattgctctgcatcaaaaatcaaaagtgtaagtggttttccagcaaaaatagatggtggaggctcatctagcactgagaggtttttaaagcaatcacctgagttttgtggggagaagcatacatcaaatataaatgaaaaagccctaatacagagaagcattgcttccaaatctgaaaagccttatttcaaggttgtcatgggcgggcccacaatatgtcgtgctcaggccgtgccggcccaattacgggctcgggcagggccgggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

248

Amino Acids

27.87

Weight (kDa)

8.56

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 681
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 4 cut(s) 20, 52, 212, 299
AcuI CTGAAG 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 267, 723, 724
AflII CTTAAG 1 cut(s) 65
AgsI TTSAA 4 cut(s) 194, 311, 428, 667
AluBI AGCT 2 cut(s) 70, 287
AluI AGCT 2 cut(s) 70, 287
Alw21I GWGCWC 1 cut(s) 703
Ama87I CYCGRG 1 cut(s) 729
AoxI GGCC 6 cut(s) 140, 269, 683, 705, 714, 737
ApaI GGGCCC 1 cut(s) 687
ApoI RAATTY 4 cut(s) 20, 52, 212, 299
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspS9I GGNCC 5 cut(s) 270, 683, 684, 715, 737
AsuC2I CCSGG 1 cut(s) 741
AsuHPI GGTGA 2 cut(s) 188, 564
AvaI CYCGRG 1 cut(s) 729
BaeGI GKGCMC 1 cut(s) 687
BalI TGGCCA 1 cut(s) 142
BanII GRGCYC 2 cut(s) 687, 730
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 703
BccI CCATC 2 cut(s) 271, 524
BceAI ACGGC 1 cut(s) 692
BcnI CCSGG 1 cut(s) 741
BfaI CTAG 2 cut(s) 185, 546
BfrI CTTAAG 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 713
Bme1390I CCNGG 1 cut(s) 741
BmeT110I CYCGRG 1 cut(s) 729
BmgT120I GGNCC 5 cut(s) 270, 683, 684, 715, 737
BmiI GGNNCC 2 cut(s) 82, 685
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 2 cut(s) 180, 497
BpiI GAAGAC 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 741
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 723, 724
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 409
Bse3DI GCAATG 3 cut(s) 118, 478, 636
BseLI CCNNNNNNNGG 3 cut(s) 267, 723, 724
BseMI GCAATG 3 cut(s) 118, 478, 636
BseMII CTCAG 3 cut(s) 543, 567, 716
BseNI ACTGG 1 cut(s) 409
BseSI GKGCMC 1 cut(s) 687
BseYI CCCAGC 1 cut(s) 332
BshFI GGCC 6 cut(s) 142, 271, 685, 707, 716, 739
BsiHKAI GWGCWC 1 cut(s) 703
BsiHKCI CYCGRG 1 cut(s) 729
BsiSI CCGG 2 cut(s) 713, 740
BslI CCNNNNNNNGG 3 cut(s) 267, 723, 724
BsnI GGCC 6 cut(s) 142, 271, 685, 707, 716, 739
BsoBI CYCGRG 1 cut(s) 729
Bsp120I GGGCCC 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 687, 703, 730
BspACI CCGC 1 cut(s) 681
BspANI GGCC 6 cut(s) 142, 271, 685, 707, 716, 739
BspCNI CTCAG 3 cut(s) 544, 568, 715
BspLI GGNNCC 2 cut(s) 82, 685
BspTI CTTAAG 1 cut(s) 65
BsrDI GCAATG 3 cut(s) 118, 478, 636
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 1 cut(s) 409
BssAI RCCGGY 1 cut(s) 712
Bst4CI ACNGT 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 683, 714
BstDEI CTNAG 4 cut(s) 167, 552, 576, 702
BstMWI GCNNNNNNNGC 2 cut(s) 546, 713
BstSCI CCNGG 1 cut(s) 739
BstSLI GKGCMC 1 cut(s) 687
BstV2I GAAGAC 1 cut(s) 398
BsuRI GGCC 6 cut(s) 142, 271, 685, 707, 716, 739
BtsIMutI CAGTG 2 cut(s) 47, 549
Cac8I GCNNGC 2 cut(s) 683, 714
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 5 cut(s) 270, 683, 684, 715, 737
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 1 cut(s) 676
DdeI CTNAG 4 cut(s) 167, 552, 576, 702
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 687, 730
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 729
EcoRI GAATTC 2 cut(s) 212, 299
EcoT38I GRGCYC 2 cut(s) 687, 730
FaeI CATG 1 cut(s) 679
FaiI YATR 9 cut(s) 36, 61, 198, 227, 263, 597, 608, 677, 694
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FatI CATG 1 cut(s) 675
FauI CCCGC 1 cut(s) 674
FriOI GRGCYC 2 cut(s) 687, 730
FspBI CTAG 2 cut(s) 185, 546
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 6 cut(s) 142, 271, 685, 707, 716, 739
HapII CCGG 2 cut(s) 713, 740
Hin1II CATG 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 206, 454, 473
HpaII CCGG 2 cut(s) 713, 740
HphI GGTGA 2 cut(s) 188, 564
Hpy188I TCNGA 3 cut(s) 85, 211, 652
Hpy188III TCNNGA 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 4, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 713
HpyF3I CTNAG 4 cut(s) 167, 552, 576, 702
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 679
KroI GCCGGC 1 cut(s) 712
KroNI GCCGGC 1 cut(s) 714
LmnI GCTCC 2 cut(s) 86, 292
LweI GCATC 2 cut(s) 180, 497
MaeI CTAG 2 cut(s) 185, 546
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 3 cut(s) 293, 305, 403
MhlI GDGCHC 3 cut(s) 687, 703, 730
MlsI TGGCCA 1 cut(s) 142
MluCI AATT 5 cut(s) 20, 52, 212, 299, 719
MluNI TGGCCA 1 cut(s) 142
MnlI CCTC 3 cut(s) 313, 530, 549
Mox20I TGGCCA 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 712
MscI TGGCCA 1 cut(s) 142
MseI TTAA 2 cut(s) 66, 563
MslI CAYNNNNRTG 1 cut(s) 364
Msp20I TGGCCA 1 cut(s) 142
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 2 cut(s) 713, 740
MspR9I CCNGG 1 cut(s) 741
MwoI GCNNNNNNNGC 2 cut(s) 546, 713
NaeI GCCGGC 1 cut(s) 714
NciI CCSGG 1 cut(s) 741
NgoMIV GCCGGC 1 cut(s) 712
NlaIII CATG 1 cut(s) 679
NlaIV GGNNCC 2 cut(s) 82, 685
NmuCI GTSAC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 714
PfeI GAWTC 3 cut(s) 206, 454, 473
PspFI CCCAGC 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 82, 685
PspOMI GGGCCC 1 cut(s) 683
PspPI GGNCC 5 cut(s) 270, 683, 684, 715, 737
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 2 cut(s) 66, 563
Sau96I GGNCC 5 cut(s) 270, 683, 684, 715, 737
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 3 cut(s) 687, 703, 730
SetI ASST 8 cut(s) 72, 123, 222, 289, 448, 560, 577, 672
SfaNI GCATC 2 cut(s) 180, 497
SfiI GGCCNNNNNGGCC 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 5 cut(s) 20, 52, 212, 299, 719
SsiI CCGC 1 cut(s) 681
SspMI CTAG 2 cut(s) 185, 546
StyD4I CCNGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 222
TasI AATT 5 cut(s) 20, 52, 212, 299, 719
TfiI GAWTC 3 cut(s) 206, 454, 473
Tru1I TTAA 2 cut(s) 66, 563
Tru9I TTAA 2 cut(s) 66, 563
TscAI CASTG 2 cut(s) 47, 556
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 6 cut(s) 45, 213, 214, 312, 404, 627
TspRI CASTG 2 cut(s) 47, 556
Vha464I CTTAAG 1 cut(s) 65
XapI RAATTY 4 cut(s) 20, 52, 212, 299
XspI CTAG 2 cut(s) 185, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.