Rh2BG170800
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000156
Physical Location & Seq
Reverse (-)
15070714 .. 15071949
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG170800.1

Sequence Viewer

Length: 828 bp
ATGCAGCGCTCATATATTCAAAAAGGTTATTTGTCTGTGCCATCTGAGTTTTCCAAGAGACATCTTACAAAGAAGCCTGCTACTGTGATCCTTCAAGTTTTGGATGGAAGAACTTGGTCCGTTCAATTGAAGTATCATCATGAACGCTCAGAAGCTAGATTCCAGAGTTGTTGGCCACTATTTGTAAGGGAGAATAATTTGAAAGTTGGTGATGCATGTGTCTTTACCTTAATTAACTGCAGTGCATTTGTATTTGAAGTGGTCTTTTATCCTGCCGCAGAAGCTGCAAATTGCCCCTTGTCACCAGGTGGAAGATCAGGAGCAATTTATCAAGTCAAAAGTAAGGGAAGTCCGATAATAGAAGTAGAATCTGAATGCGGTGTGATATGTGGAATTGGTGTATCTGGCTCTCTTGAAACTGGCAAGAACAAAATGTCAAAGACTAGTGTGCAGGTTACTGAAAGGCCCTCTTCATCTTTGACGGCTCCATTGGATAATCATCATGAAGCTGCCAACAACTTCGTCTCAGAGAATCCCTTTTTCAAAGTCACTTTGGGTTCCTCCCATATGGAGAAGTCAGTTGTGCATGTACCAGCTAGTTTTGCTTGGAGTTTCATTAAAAGGAAGAAACAAAAAGTGATGCTTCAGGTCACAGATAGATTGTGGCCTGTGGATTTGATAGAATTTAAGCCATCTTTAGCTTCATTTTCTACTGGCTGGGCCACATTTGTTGAGGAATATTCATTAAGAGTCGGAGATGTTTGCATATTTGAGCTTATGGAGATGAATGATGACATTATACTACAAGTTCATTTTTTCAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

275

Amino Acids

30.86

Weight (kDa)

8.37

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 3 - 87 8.2e-17 B3 DNA binding domain
B3 PF02362 180 - 273 1.1e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AciI CCGC 2 cut(s) 276, 378
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 683
AcuI CTGAAG 1 cut(s) 629
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 1 cut(s) 591
AfeI AGCGCT 1 cut(s) 8
AgsI TTSAA 8 cut(s) 20, 95, 125, 130, 202, 257, 416, 544
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 6 cut(s) 155, 284, 509, 596, 701, 775
AluI AGCT 6 cut(s) 155, 284, 509, 596, 701, 775
Alw26I GTCTC 2 cut(s) 52, 529
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 284
Aor51HI AGCGCT 1 cut(s) 8
AoxI GGCC 4 cut(s) 173, 464, 665, 720
ApeKI GCWGC 3 cut(s) 4, 284, 509
ApoI RAATTY 1 cut(s) 683
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 3 cut(s) 117, 465, 720
AsuHPI GGTGA 2 cut(s) 221, 294
AvaII GGWCC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 175
BbvI GCAGC 3 cut(s) 16, 271, 496
BccI CCATC 3 cut(s) 49, 98, 700
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 52, 529
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 3 cut(s) 156, 444, 597
BfmI CTRYAG 1 cut(s) 238
BfoI RGCGCY 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 442
BisI GCNGC 4 cut(s) 5, 276, 285, 510
BlsI GCNGC 4 cut(s) 6, 277, 286, 511
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 3 cut(s) 117, 465, 720
BmiI GGNNCC 2 cut(s) 486, 559
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 202, 630
BsaBI GATNNNNATC 1 cut(s) 498
Bse1I ACTGG 2 cut(s) 424, 718
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 109
BseJI GATNNNNATC 1 cut(s) 498
BseMII CTCAG 3 cut(s) 36, 162, 540
BseNI ACTGG 2 cut(s) 424, 718
BseXI GCAGC 3 cut(s) 16, 271, 496
BseYI CCCAGC 1 cut(s) 717
BsgI GTGCAG 1 cut(s) 470
BshFI GGCC 4 cut(s) 175, 466, 667, 722
BsmAI GTCTC 2 cut(s) 52, 529
BsmBI CGTCTC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 4 cut(s) 175, 466, 667, 722
Bsp143I GATC 2 cut(s) 87, 314
BspACI CCGC 2 cut(s) 276, 378
BspANI GGCC 4 cut(s) 175, 466, 667, 722
BspCNI CTCAG 3 cut(s) 37, 161, 539
BspHI TCATGA 2 cut(s) 139, 502
BspLI GGNNCC 2 cut(s) 486, 559
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 1 cut(s) 82
BsrI ACTGG 2 cut(s) 424, 718
BssMI GATC 2 cut(s) 87, 314
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 45, 148, 526
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 2 cut(s) 90, 317
BstMAI GTCTC 2 cut(s) 52, 529
BstMBI GATC 2 cut(s) 87, 314
BstMWI GCNNNNNNNGC 3 cut(s) 281, 284, 602
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 219, 590
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 3 cut(s) 16, 271, 496
BsuRI GGCC 4 cut(s) 175, 466, 667, 722
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 284
CciI TCATGA 2 cut(s) 139, 502
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 117, 465, 720
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 1 cut(s) 590
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 4 cut(s) 140, 216, 503, 587
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 3 cut(s) 45, 148, 526
DpnI GATC 2 cut(s) 89, 316
DpnII GATC 2 cut(s) 87, 314
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 304
EcoT22I ATGCAT 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 529
FaeI CATG 4 cut(s) 143, 219, 506, 590
FalI AAGNNNNNCTT 4 cut(s) 454, 486, 627, 659
FatI CATG 4 cut(s) 139, 215, 502, 586
FauNDI CATATG 1 cut(s) 567
Fnu4HI GCNGC 4 cut(s) 5, 276, 285, 510
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 4 cut(s) 5, 276, 285, 510
FspBI CTAG 3 cut(s) 156, 444, 597
GlaI GCGC 1 cut(s) 8
GluI GCNGC 4 cut(s) 5, 276, 285, 510
GsaI CCCAGC 1 cut(s) 721
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 4 cut(s) 175, 466, 667, 722
HhaI GCGC 1 cut(s) 9
Hin1II CATG 4 cut(s) 143, 219, 506, 590
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 4 cut(s) 159, 368, 532, 750
HphI GGTGA 2 cut(s) 221, 294
Hpy188I TCNGA 7 cut(s) 46, 151, 354, 373, 529, 755, 821
Hpy188III TCNNGA 5 cut(s) 140, 163, 318, 413, 503
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 8 cut(s) 4, 215, 240, 245, 287, 451, 586, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 284, 602
HpyF3I CTNAG 3 cut(s) 45, 148, 526
Hsp92II CATG 4 cut(s) 143, 219, 506, 590
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 87, 314
LmnI GCTCC 2 cut(s) 320, 490
Lsp1109I GCAGC 3 cut(s) 16, 271, 496
LweI GCATC 2 cut(s) 202, 630
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 3 cut(s) 156, 444, 597
MaeIII GTNAC 4 cut(s) 300, 454, 547, 649
MalI GATC 2 cut(s) 89, 316
MboI GATC 2 cut(s) 87, 314
MboII GAAGA 4 cut(s) 120, 324, 462, 637
MfeI CAATTG 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 7 cut(s) 125, 196, 231, 289, 324, 393, 683
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 1 cut(s) 759
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 3 cut(s) 478, 571, 727
Mox20I TGGCCA 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 217
MscI TGGCCA 1 cut(s) 175
MseI TTAA 5 cut(s) 230, 234, 618, 687, 746
Msp20I TGGCCA 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 281, 284, 602
NdeI CATATG 1 cut(s) 567
NdeII GATC 2 cut(s) 87, 314
NlaIII CATG 4 cut(s) 143, 219, 506, 590
NlaIV GGNNCC 2 cut(s) 486, 559
NmuCI GTSAC 3 cut(s) 300, 547, 649
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 2 cut(s) 219, 590
PacI TTAATTAA 1 cut(s) 234
PagI TCATGA 2 cut(s) 139, 502
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 159, 368, 532
PkrI GCNGC 4 cut(s) 6, 277, 286, 511
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 486, 559
PspPI GGNCC 3 cut(s) 117, 465, 720
PstI CTGCAG 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
SaqAI TTAA 5 cut(s) 230, 234, 618, 687, 746
SatI GCNGC 4 cut(s) 5, 276, 285, 510
Sau3AI GATC 2 cut(s) 87, 314
Sau96I GGNCC 3 cut(s) 117, 465, 720
SchI GAGTC 1 cut(s) 759
ScrFI CCNGG 1 cut(s) 306
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 2 cut(s) 202, 630
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 117
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 7 cut(s) 125, 196, 231, 289, 324, 393, 683
SsiI CCGC 2 cut(s) 276, 378
SspI AATATT 1 cut(s) 740
SspMI CTAG 3 cut(s) 156, 444, 597
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 85
TasI AATT 7 cut(s) 125, 196, 231, 289, 324, 393, 683
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 3 cut(s) 159, 368, 532
Tru1I TTAA 5 cut(s) 230, 234, 618, 687, 746
Tru9I TTAA 5 cut(s) 230, 234, 618, 687, 746
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 3 cut(s) 300, 547, 649
TseI GCWGC 3 cut(s) 4, 284, 509
Tsp45I GTSAC 3 cut(s) 300, 547, 649
TspDTI ATGAA 8 cut(s) 156, 462, 519, 604, 693, 732, 800, 800
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 683
XceI RCATGY 2 cut(s) 219, 590
XspI CTAG 3 cut(s) 156, 444, 597
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.