Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

47145736 .. 47148784

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G579400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTGCAAAGAAAATTCCCCATTTCATGAAGACGATCATGAACACGAATGCTAGAGACAAAAGACTTAGGGTGCCAAAGACATTTATGAACAAACATGGAGAGCATCTATCAGATCAAATACACTTTAAGCTTCCAGGTGGTTTGGAAAGTGAAATAAAACTCAAAAGATGTGCTGGTGAGTTTTGGTTTGAAAAGGGTTGGCCAGAGTTCTCTAAGTTTTGCTCTCTTGATTTTGGTAGCTGCTTAGTCTTCCGATATGAAGGGAAATCCAAATTCCATGTCTTGATATTTGATGAAAGCGGCATAGAGATTGAATATCCAACAATGCCCCAGATTGAAGAAACCGATGAAGAAGAAGATGATGATATGTCTACAAAAGAAATTTTGGAGATTGAAGATGATGATAAGTCTGTAGAGAGCTTAGATATTGAAACTGATGAAAGTTTGGAGATTTTAGTAATTGATGAAGATGATGATGATGTTAAGTCTGTTGAGAGTTTGGAGTCCTTTCCTCTGCCTCAAGAGAAAAACAGAAGAAAGCCACGCTCTTCCTCAAAGCCATCATCTTCTTCATCTTCATCTTTGAGGGCTGCTGTTAAAGCTGCCAACAAGTTCGTCTCAAGCCACCCATTCTTCAAAATCACTTTGGGGCCATCCCGTAAGGCGCATGTTCCAGCTAGTTTTCGAAAGCATTTCACTCCAGTGAAGAATCAAACCGCGAGGCTTCTGGTCGGAGCTAGATTGTGGCCTGTGACTTTGATTTTTCATCCTCAAAACTACCGATTTAGTGCTGGCTGGGGAGCATTTGAAAAGGCAAATTGGTTAAAAGAAGGAGATATTTGCATCTTTGAGCTTATGGACAAAAAGAACCTTGCACTGGAAGTGAACATTTTCAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

302

Amino Acids

34.59

Weight (kDa)

5.92

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	1 cut(s)	722
AciI	CCGC	2 cut(s)	303, 720
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	3 cut(s)	15, 275, 384
AfiI	CCNNNNNNNGG	1 cut(s)	880
AgsI	TTSAA	7 cut(s)	194, 317, 341, 398, 434, 640, 812
AjnI	CCWGG	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	704
AluBI	AGCT	7 cut(s)	133, 243, 423, 605, 680, 740, 856
AluI	AGCT	7 cut(s)	133, 243, 423, 605, 680, 740, 856
Alw26I	GTCTC	2 cut(s)	51, 625
AlwNI	CAGNNNCTG	1 cut(s)	903
AoxI	GGCC	3 cut(s)	203, 653, 749
ApeKI	GCWGC	3 cut(s)	243, 593, 605
ApoI	RAATTY	3 cut(s)	15, 275, 384
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
Asp700I	GAANNNNTTC	1 cut(s)	893
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	73
BbsI	GAAGAC	2 cut(s)	38, 244
BbvI	GCAGC	3 cut(s)	230, 580, 592
BccI	CCATC	2 cut(s)	571, 664
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	51, 625
BfaI	CTAG	3 cut(s)	54, 681, 741
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	4 cut(s)	244, 304, 594, 606
BlsI	GCNGC	4 cut(s)	245, 305, 595, 607
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	75, 654
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	115, 855, 890
BpiI	GAAGAC	2 cut(s)	38, 244
BpmI	CTGGAG	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	688
BpuEI	CTTGAG	2 cut(s)	507, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse1I	ACTGG	2 cut(s)	704, 885
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	656, 769
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseNI	ACTGG	2 cut(s)	704, 885
BseXI	GCAGC	3 cut(s)	230, 580, 592
BseYI	CCCAGC	1 cut(s)	798
Bsh1236I	CGCG	1 cut(s)	722
BshFI	GGCC	3 cut(s)	205, 655, 751
BshNI	GGYRCC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmAI	GTCTC	2 cut(s)	51, 625
BsmBI	CGTCTC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	205, 655, 751
Bsp119I	TTCGAA	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	36, 115
BspACI	CCGC	2 cut(s)	303, 720
BspANI	GGCC	3 cut(s)	205, 655, 751
BspFNI	CGCG	1 cut(s)	722
BspHI	TCATGA	2 cut(s)	27, 39
BspLI	GGNNCC	2 cut(s)	75, 654
BspQI	GCTCTTC	1 cut(s)	556
BspT104I	TTCGAA	1 cut(s)	688
BspT107I	GGYRCC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	704, 885
BssMI	GATC	2 cut(s)	36, 115
Bst2UI	CCWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	556
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	4 cut(s)	68, 216, 247, 424
BstF5I	GGATG	2 cut(s)	656, 769
BstFNI	CGCG	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	2 cut(s)	39, 118
BstMAI	GTCTC	2 cut(s)	51, 625
BstMBI	GATC	2 cut(s)	36, 115
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	3 cut(s)	230, 580, 592
BstV2I	GAAGAC	2 cut(s)	38, 244
BsuRI	GGCC	3 cut(s)	205, 655, 751
BtsCI	GGATG	2 cut(s)	656, 769
BtsIMutI	CAGTG	2 cut(s)	711, 878
Cac8I	GCNNGC	1 cut(s)	796
CaiI	CAGNNNCTG	1 cut(s)	903
CciI	TCATGA	2 cut(s)	27, 39
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	653
CviAII	CATG	5 cut(s)	28, 40, 98, 281, 671
DdeI	CTNAG	4 cut(s)	68, 216, 247, 424
DpnI	GATC	2 cut(s)	38, 117
DpnII	GATC	2 cut(s)	36, 115
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	5 cut(s)	31, 43, 101, 284, 674
FatI	CATG	5 cut(s)	27, 39, 97, 280, 670
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	4 cut(s)	244, 304, 594, 606
FokI	GGATG	2 cut(s)	643, 756
Fsp4HI	GCNGC	4 cut(s)	244, 304, 594, 606
FspBI	CTAG	3 cut(s)	54, 681, 741
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	4 cut(s)	244, 304, 594, 606
GsaI	CCCAGC	1 cut(s)	802
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	205, 655, 751
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	5 cut(s)	31, 43, 101, 284, 674
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	506, 712
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	375, 889
Hpy188I	TCNGA	4 cut(s)	115, 257, 737, 899
Hpy188III	TCNNGA	5 cut(s)	28, 40, 230, 286, 524
Hpy8I	GTNNAC	2 cut(s)	375, 889
HpyAV	CCTTC	2 cut(s)	257, 827
HpyCH4V	TGCA	3 cut(s)	8, 846, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	4 cut(s)	68, 216, 247, 424
Hsp92II	CATG	5 cut(s)	31, 43, 101, 284, 674
HspAI	GCGC	1 cut(s)	668
Kzo9I	GATC	2 cut(s)	36, 115
LguI	GCTCTTC	1 cut(s)	556
LmnI	GCTCC	2 cut(s)	737, 803
Lsp1109I	GCAGC	3 cut(s)	230, 580, 592
LweI	GCATC	3 cut(s)	115, 855, 890
MaeI	CTAG	3 cut(s)	54, 681, 741
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	2 cut(s)	38, 117
MboI	GATC	2 cut(s)	36, 115
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	5 cut(s)	15, 275, 384, 462, 820
MluNI	TGGCCA	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	2 cut(s)	347, 715
MnlI	CCTC	6 cut(s)	525, 531, 565, 582, 717, 783
Mox20I	TGGCCA	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	4 cut(s)	129, 486, 600, 827
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	2 cut(s)	36, 115
NlaIII	CATG	5 cut(s)	31, 43, 101, 284, 674
NlaIV	GGNNCC	2 cut(s)	75, 654
NmuCI	GTSAC	1 cut(s)	754
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	688
OliI	CACNNNNGTG	1 cut(s)	704
PagI	TCATGA	2 cut(s)	27, 39
PciSI	GCTCTTC	1 cut(s)	556
PctI	GAATGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	1 cut(s)	712
PkrI	GCNGC	4 cut(s)	245, 305, 595, 607
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	798
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	75, 654
PspPI	GGNCC	1 cut(s)	653
PstNI	CAGNNNCTG	1 cut(s)	903
RseI	CAYNNNNRTG	1 cut(s)	704
SapI	GCTCTTC	1 cut(s)	556
SaqAI	TTAA	4 cut(s)	129, 486, 600, 827
SatI	GCNGC	4 cut(s)	244, 304, 594, 606
Sau3AI	GATC	2 cut(s)	36, 115
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	9 cut(s)	135, 142, 245, 425, 607, 682, 742, 858, 876
SfaNI	GCATC	3 cut(s)	115, 855, 890
SfcI	CTRYAG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	522, 622
SmoI	CTYRAG	2 cut(s)	522, 622
Sse9I	AATT	5 cut(s)	15, 275, 384, 462, 820
SsiI	CCGC	2 cut(s)	303, 720
SspMI	CTAG	3 cut(s)	54, 681, 741
StyD4I	CCNGG	1 cut(s)	136
TaqI	TCGA	1 cut(s)	688
TasI	AATT	5 cut(s)	15, 275, 384, 462, 820
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	4 cut(s)	129, 486, 600, 827
Tru9I	TTAA	4 cut(s)	129, 486, 600, 827
TscAI	CASTG	2 cut(s)	711, 885
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	3 cut(s)	243, 593, 605
Tsp45I	GTSAC	1 cut(s)	754
TspRI	CASTG	2 cut(s)	711, 885
XapI	RAATTY	3 cut(s)	15, 275, 384
XceI	RCATGY	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	3 cut(s)	54, 681, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.