Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002434.1

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

62 .. 796

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002434.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgccatcacttccattaccattgtcaagggcctgcagacttgacgatggtgatgatgaggatgatgaacatgaagatgaagaggatagtgatgatgaatcaattgaaatcttggatccttttccacctcatctgaaaagaaaggagaaatctccattggcatccaagattcataagagaatgagacctagttccagaactcaaaaattccctgaaggaggacctgaggttcctaggaagatgcctggtcctgttatggcaagttctggaaaatacatagctcttcagagagctaatggtttcaaatctgcaaaccctgatttcaggatttcattacattcctcctatatcactggacattatttgtatttgccagccaagtttgccaatagatatcttgttaagcagcctagacatgccatccttcgggttgcaagtaaaaaaacttggtctgtcaacgtacggtatgctgcagcaagaaccacattccaaactggttggtttgaatttgtgcaagataatgatttgaaacagggtgatgcttgtattttcatgttgaccgacaacatcaaggttgtatttgatgttgtatttttccgagccacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

202

Amino Acids

23.06

Weight (kDa)

8.47

Isoelectric Point (pI)

64.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	110, 123
AcsI	RAATTY	2 cut(s)	206, 506
AcuI	CTGAAG	2 cut(s)	234, 269
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	2 cut(s)	218, 426
AgsI	TTSAA	4 cut(s)	107, 304, 506, 529
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	281, 293
AluI	AGCT	2 cut(s)	281, 293
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	110, 123
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	406, 470, 473
ApoI	RAATTY	2 cut(s)	206, 506
AspA2I	CCTAGG	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	30, 221, 248
AsuHPI	GGTGA	2 cut(s)	62, 548
AvaII	GGWCC	2 cut(s)	221, 248
AvrII	CCTAGG	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	418, 457, 485
BccI	CCATC	3 cut(s)	13, 41, 428
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	189, 234, 411
BfmI	CTRYAG	2 cut(s)	34, 471
BisI	GCNGC	3 cut(s)	407, 471, 474
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	3 cut(s)	408, 472, 475
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	2 cut(s)	221, 248
BmgT120I	GGNCC	3 cut(s)	30, 221, 248
BmiI	GGNNCC	2 cut(s)	117, 231
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	3 cut(s)	170, 231, 529
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 426
Bse1I	ACTGG	2 cut(s)	358, 499
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	3 cut(s)	67, 161, 420
BseLI	CCNNNNNNNGG	2 cut(s)	218, 426
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	358, 499
BseXI	GCAGC	3 cut(s)	418, 457, 485
BshFI	GGCC	1 cut(s)	32
BsiWI	CGTACG	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	218, 426
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	117, 231
BspMAI	CTGCAG	2 cut(s)	38, 475
BspPI	GGATC	2 cut(s)	110, 123
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	358, 499
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	465
Bst6I	CTCTTC	2 cut(s)	75, 288
BstC8I	GCNNGC	2 cut(s)	34, 375
BstDEI	CTNAG	1 cut(s)	225
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	67, 161, 420
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	2 cut(s)	34, 471
BstV1I	GCAGC	3 cut(s)	418, 457, 485
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	3 cut(s)	67, 161, 420
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	34, 375
Cfr13I	GGNCC	3 cut(s)	30, 221, 248
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	3 cut(s)	71, 416, 553
CviJI	RGCY	6 cut(s)	32, 281, 293, 377, 409, 602
CviKI_1	RGCY	6 cut(s)	32, 281, 293, 377, 409, 602
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	75, 288
EarI	CTCTTC	2 cut(s)	75, 288
Eco130I	CCWWGG	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	221, 248
Eco57I	CTGAAG	2 cut(s)	234, 269
Eco81I	CCTNAGG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoO109I	RGGNCCY	2 cut(s)	30, 221
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	3 cut(s)	74, 419, 556
FaiI	YATR	9 cut(s)	72, 174, 257, 278, 348, 417, 468, 554, 607
FatI	CATG	3 cut(s)	70, 415, 552
Fnu4HI	GCNGC	3 cut(s)	407, 471, 474
FokI	GGATG	3 cut(s)	74, 148, 407
Fsp4HI	GCNGC	3 cut(s)	407, 471, 474
FspBI	CTAG	3 cut(s)	189, 234, 411
GluI	GCNGC	3 cut(s)	407, 471, 474
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	74, 419, 556
HincII	GTYRAC	2 cut(s)	457, 558
HindII	GTYRAC	2 cut(s)	457, 558
HinfI	GANTC	2 cut(s)	98, 169
HphI	GGTGA	2 cut(s)	62, 548
Hpy166II	GTNNAC	2 cut(s)	457, 558
Hpy188I	TCNGA	3 cut(s)	135, 288, 599
Hpy188III	TCNNGA	3 cut(s)	195, 267, 325
Hpy8I	GTNNAC	2 cut(s)	457, 558
HpyAV	CCTTC	2 cut(s)	209, 434
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	5 cut(s)	36, 311, 434, 473, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	74, 419, 556
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	288
Lsp1109I	GCAGC	3 cut(s)	418, 457, 485
LweI	GCATC	3 cut(s)	170, 231, 529
MaeI	CTAG	3 cut(s)	189, 234, 411
MaeII	ACGT	1 cut(s)	459
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	86, 92, 250, 275
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	3 cut(s)	102, 206, 506
MnlI	CCTC	6 cut(s)	52, 76, 138, 212, 220, 352
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	74, 419, 556
NlaIV	GGNNCC	2 cut(s)	117, 231
NspI	RCATGY	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	98, 169
Pfl23II	CGTACG	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	408, 472, 475
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspLI	CGTACG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	117, 231
PspPI	GGNCC	3 cut(s)	30, 221, 248
PspPPI	RGGWCCY	1 cut(s)	221
PstI	CTGCAG	2 cut(s)	38, 475
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	407, 471, 474
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	3 cut(s)	30, 221, 248
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	8 cut(s)	130, 190, 226, 231, 283, 295, 462, 576
SfaNI	GCATC	3 cut(s)	170, 231, 529
SfcI	CTRYAG	2 cut(s)	34, 471
SinI	GGWCC	2 cut(s)	221, 248
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	102, 206, 506
SspMI	CTAG	3 cut(s)	189, 234, 411
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	462
TaqII	GACCGA	1 cut(s)	575
TasI	AATT	3 cut(s)	102, 206, 506
TfiI	GAWTC	2 cut(s)	98, 169
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	3 cut(s)	406, 470, 473
TspDTI	ATGAA	7 cut(s)	81, 87, 93, 111, 161, 321, 541
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	221, 248
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	2 cut(s)	206, 506
XceI	RCATGY	1 cut(s)	419
XmaJI	CCTAGG	1 cut(s)	233
XspI	CTAG	3 cut(s)	189, 234, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.