Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

24052707 .. 24053132

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1274200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCAACTCCAGTATTTTTCAAGGTTCCAAGTGCCTTAGAATGGAAAATAGAACTTCGAAAATGGGATGGTGAGGTCTGGTTTGAGAATGGTTGGCAGGACTTCTCTAGTTTTTACTCTCTGGATTATGGTCACTTGCTGGTTTTAGGGTATGAAAGGAATTCAAAATTCAGGGTTCTGATATTAGAGAGAAGCTGCACAGAGATTGAATATCCCCTACAAAATACGGCGGAAAAAACTGATGAAGATGAAAAATCCGGCGATGATTCCCATGATATTTCCAATCATGAGTCTGGTGATGATTTGGATGTTGGTTCTGTTGAAATCGTGGAGAATCATACACCCTGCCCAAGAAAAACAAGGGAGAAATCTCTACTCGCAAGAAAAACAGACCAAGTTCACGTGGAGAATCGTGGAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

142

Amino Acids

16.37

Weight (kDa)

4.78

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	5 - 64	6.2e-06	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	160, 167
AcvI	CACGTG	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	22, 165, 209, 323
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	160, 167
AsuHPI	GGTGA	2 cut(s)	83, 308
AsuII	TTCGAA	1 cut(s)	58
BbrPI	CACGTG	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	73, 313
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	58
BspACI	CCGC	1 cut(s)	230
BspHI	TCATGA	2 cut(s)	286, 422
BspLI	GGNNCC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	73, 313
BstV1I	GCAGC	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	73, 313
CciI	TCATGA	2 cut(s)	286, 422
CviAII	CATG	3 cut(s)	272, 287, 423
CviJI	RGCY	1 cut(s)	195
CviKI_1	RGCY	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	245
Eco72I	CACGTG	1 cut(s)	403
EcoRI	GAATTC	1 cut(s)	160
FaeI	CATG	3 cut(s)	275, 290, 426
FaiI	YATR	6 cut(s)	129, 153, 273, 288, 339, 424
FatI	CATG	3 cut(s)	271, 286, 422
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	80, 320
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	1 cut(s)	196
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	3 cut(s)	275, 290, 426
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	266, 290, 334, 409, 419
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	83, 308
Hpy166II	GTNNAC	2 cut(s)	6, 400
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	122, 287, 423
Hpy8I	GTNNAC	2 cut(s)	6, 400
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	275, 290, 426
LpnPI	CCDG	9 cut(s)	24, 64, 83, 107, 125, 157, 271, 279, 358
Lsp1109I	GCAGC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	131
MboII	GAAGA	1 cut(s)	257
MluCI	AATT	2 cut(s)	160, 167
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	1 cut(s)	67
MspI	CCGG	1 cut(s)	258
NlaIII	CATG	3 cut(s)	275, 290, 426
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	58
PagI	TCATGA	2 cut(s)	286, 422
PfeI	GAWTC	4 cut(s)	266, 334, 409, 419
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	298
PmaCI	CACGTG	1 cut(s)	403
PmlI	CACGTG	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	27
SatI	GCNGC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	299
SetI	ASST	4 cut(s)	27, 78, 197, 405
SfuI	TTCGAA	1 cut(s)	58
Sse9I	AATT	2 cut(s)	160, 167
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	1 cut(s)	58
TasI	AATT	2 cut(s)	160, 167
TfiI	GAWTC	4 cut(s)	266, 334, 409, 419
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	168, 258, 264
XapI	RAATTY	2 cut(s)	160, 167
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.