B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 33 - 118 | 1.9e-13 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 489, 586 |
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| Acc65I | GGTACC | 1 cut(s) | 44 |
| AccB1I | GGYRCC | 1 cut(s) | 44 |
| AccIII | TCCGGA | 1 cut(s) | 130 |
| AciI | CCGC | 1 cut(s) | 741 |
| AcoI | YGGCCR | 1 cut(s) | 257 |
| AcsI | RAATTY | 3 cut(s) | 23, 38, 169 |
| AfaI | GTAC | 4 cut(s) | 46, 227, 532, 772 |
| AgsI | TTSAA | 7 cut(s) | 85, 398, 431, 525, 692, 708, 756 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 142 |
| Alw26I | GTCTC | 3 cut(s) | 105, 467, 572 |
| Aor13HI | TCCGGA | 1 cut(s) | 130 |
| AoxI | GGCC | 1 cut(s) | 257 |
| ApoI | RAATTY | 3 cut(s) | 23, 38, 169 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 520, 645 |
| Asp718I | GGTACC | 1 cut(s) | 44 |
| AspS9I | GGNCC | 1 cut(s) | 588 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| AvaII | GGWCC | 1 cut(s) | 588 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 217, 250 |
| BalI | TGGCCA | 1 cut(s) | 259 |
| BanI | GGYRCC | 1 cut(s) | 44 |
| BauI | CACGAG | 1 cut(s) | 803 |
| BciVI | GTATCC | 1 cut(s) | 384 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 3 cut(s) | 105, 467, 572 |
| BfaI | CTAG | 4 cut(s) | 95, 108, 327, 650 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BfuI | GTATCC | 1 cut(s) | 384 |
| BglII | AGATCT | 1 cut(s) | 160 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 588 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 142 |
| BmgT120I | GGNCC | 1 cut(s) | 588 |
| BmiI | GGNNCC | 2 cut(s) | 46, 589 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmrI | ACTGGG | 2 cut(s) | 131, 617 |
| BmuI | ACTGGG | 2 cut(s) | 131, 617 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaWI | WCCGGW | 2 cut(s) | 33, 130 |
| Bse1I | ACTGG | 2 cut(s) | 126, 623 |
| BseAI | TCCGGA | 1 cut(s) | 130 |
| BseGI | GGATG | 1 cut(s) | 737 |
| BseMII | CTCAG | 1 cut(s) | 562 |
| BseNI | ACTGG | 2 cut(s) | 126, 623 |
| BseYI | CCCAGC | 1 cut(s) | 48 |
| BshFI | GGCC | 1 cut(s) | 259 |
| BshNI | GGYRCC | 1 cut(s) | 44 |
| BsiSI | CCGG | 3 cut(s) | 19, 34, 131 |
| BsmAI | GTCTC | 3 cut(s) | 105, 467, 572 |
| BsnI | GGCC | 1 cut(s) | 259 |
| Bsp13I | TCCGGA | 1 cut(s) | 130 |
| Bsp143I | GATC | 2 cut(s) | 160, 366 |
| BspACI | CCGC | 1 cut(s) | 741 |
| BspANI | GGCC | 1 cut(s) | 259 |
| BspCNI | CTCAG | 1 cut(s) | 561 |
| BspEI | TCCGGA | 1 cut(s) | 130 |
| BspLI | GGNNCC | 2 cut(s) | 46, 589 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BspT107I | GGYRCC | 1 cut(s) | 44 |
| BsrI | ACTGG | 2 cut(s) | 126, 623 |
| BssMI | GATC | 2 cut(s) | 160, 366 |
| BssSI | CACGAG | 1 cut(s) | 803 |
| Bst2BI | CACGAG | 1 cut(s) | 803 |
| Bst4CI | ACNGT | 2 cut(s) | 453, 520 |
| BstDEI | CTNAG | 3 cut(s) | 458, 548, 656 |
| BstF5I | GGATG | 1 cut(s) | 737 |
| BstKTI | GATC | 2 cut(s) | 163, 369 |
| BstMAI | GTCTC | 3 cut(s) | 105, 467, 572 |
| BstMBI | GATC | 2 cut(s) | 160, 366 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 650 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstX2I | RGATCY | 1 cut(s) | 160 |
| BstYI | RGATCY | 1 cut(s) | 160 |
| BsuI | GTATCC | 1 cut(s) | 384 |
| BsuRI | GGCC | 1 cut(s) | 259 |
| BtsCI | GGATG | 1 cut(s) | 737 |
| BtsIMutI | CAGTG | 2 cut(s) | 449, 630 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| Cfr13I | GGNCC | 1 cut(s) | 588 |
| Csp6I | GTAC | 4 cut(s) | 45, 226, 531, 771 |
| CviAII | CATG | 3 cut(s) | 192, 505, 584 |
| CviJI | RGCY | 6 cut(s) | 52, 187, 259, 288, 697, 816 |
| CviKI_1 | RGCY | 6 cut(s) | 52, 187, 259, 288, 697, 816 |
| CviQI | GTAC | 4 cut(s) | 45, 226, 531, 771 |
| DdeI | CTNAG | 3 cut(s) | 458, 548, 656 |
| DpnI | GATC | 2 cut(s) | 162, 368 |
| DpnII | GATC | 2 cut(s) | 160, 366 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 489, 586 |
| DriI | GACNNNNNGTC | 1 cut(s) | 142 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 489, 586 |
| EaeI | YGGCCR | 1 cut(s) | 257 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 142 |
| EciI | GGCGGA | 1 cut(s) | 730 |
| Eco47I | GGWCC | 1 cut(s) | 588 |
| FaeI | CATG | 3 cut(s) | 195, 508, 587 |
| FatI | CATG | 3 cut(s) | 191, 504, 583 |
| FokI | GGATG | 1 cut(s) | 724 |
| FspBI | CTAG | 4 cut(s) | 95, 108, 327, 650 |
| GsaI | CCCAGC | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 259 |
| HapII | CCGG | 3 cut(s) | 19, 34, 131 |
| Hin1II | CATG | 3 cut(s) | 195, 508, 587 |
| HinfI | GANTC | 4 cut(s) | 85, 127, 419, 662 |
| HpaII | CCGG | 3 cut(s) | 19, 34, 131 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy188I | TCNGA | 3 cut(s) | 202, 311, 730 |
| HpyAV | CCTTC | 2 cut(s) | 244, 311 |
| HpyCH4III | ACNGT | 2 cut(s) | 453, 520 |
| HpyCH4V | TGCA | 1 cut(s) | 536 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 650 |
| HpyF3I | CTNAG | 3 cut(s) | 458, 548, 656 |
| Hsp92II | CATG | 3 cut(s) | 195, 508, 587 |
| Kpn2I | TCCGGA | 1 cut(s) | 130 |
| KpnI | GGTACC | 1 cut(s) | 48 |
| Kzo9I | GATC | 2 cut(s) | 160, 366 |
| MaeI | CTAG | 4 cut(s) | 95, 108, 327, 650 |
| MaeIII | GTNAC | 1 cut(s) | 175 |
| MalI | GATC | 2 cut(s) | 162, 368 |
| MboI | GATC | 2 cut(s) | 160, 366 |
| MboII | GAAGA | 2 cut(s) | 410, 612 |
| MfeI | CAATTG | 1 cut(s) | 360 |
| MflI | RGATCY | 1 cut(s) | 160 |
| MlsI | TGGCCA | 1 cut(s) | 259 |
| MluCI | AATT | 6 cut(s) | 23, 38, 103, 169, 215, 360 |
| MluNI | TGGCCA | 1 cut(s) | 259 |
| MnlI | CCTC | 8 cut(s) | 127, 229, 433, 433, 504, 510, 675, 756 |
| Mox20I | TGGCCA | 1 cut(s) | 259 |
| MroI | TCCGGA | 1 cut(s) | 130 |
| MroXI | GAANNNNTTC | 2 cut(s) | 520, 645 |
| MscI | TGGCCA | 1 cut(s) | 259 |
| MseI | TTAA | 1 cut(s) | 381 |
| Msp20I | TGGCCA | 1 cut(s) | 259 |
| MspI | CCGG | 3 cut(s) | 19, 34, 131 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MunI | CAATTG | 1 cut(s) | 360 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 650 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 2 cut(s) | 160, 366 |
| NlaIII | CATG | 3 cut(s) | 195, 508, 587 |
| NlaIV | GGNNCC | 2 cut(s) | 46, 589 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 375 |
| PdmI | GAANNNNTTC | 2 cut(s) | 520, 645 |
| PfeI | GAWTC | 4 cut(s) | 85, 127, 419, 662 |
| PspFI | CCCAGC | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 2 cut(s) | 46, 589 |
| PspPI | GGNCC | 1 cut(s) | 588 |
| PsuI | RGATCY | 1 cut(s) | 160 |
| RsaI | GTAC | 4 cut(s) | 46, 227, 532, 772 |
| RsaNI | GTAC | 4 cut(s) | 45, 226, 531, 771 |
| SaqAI | TTAA | 1 cut(s) | 381 |
| Sau3AI | GATC | 2 cut(s) | 160, 366 |
| Sau96I | GGNCC | 1 cut(s) | 588 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SetI | ASST | 6 cut(s) | 227, 235, 240, 300, 339, 686 |
| SinI | GGWCC | 1 cut(s) | 588 |
| Sse9I | AATT | 6 cut(s) | 23, 38, 103, 169, 215, 360 |
| SsiI | CCGC | 1 cut(s) | 741 |
| SspMI | CTAG | 4 cut(s) | 95, 108, 327, 650 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 2 cut(s) | 453, 520 |
| TaqI | TCGA | 3 cut(s) | 269, 369, 481 |
| TasI | AATT | 6 cut(s) | 23, 38, 103, 169, 215, 360 |
| TatI | WGTACW | 1 cut(s) | 770 |
| TfiI | GAWTC | 4 cut(s) | 85, 127, 419, 662 |
| Tru1I | TTAA | 1 cut(s) | 381 |
| Tru9I | TTAA | 1 cut(s) | 381 |
| TscAI | CASTG | 2 cut(s) | 456, 630 |
| TspDTI | ATGAA | 5 cut(s) | 330, 423, 521, 581, 676 |
| TspRI | CASTG | 2 cut(s) | 456, 630 |
| VpaK11BI | GGWCC | 1 cut(s) | 588 |
| XapI | RAATTY | 3 cut(s) | 23, 38, 169 |
| XbaI | TCTAGA | 3 cut(s) | 94, 107, 326 |
| XmnI | GAANNNNTTC | 2 cut(s) | 520, 645 |
| XspI | CTAG | 4 cut(s) | 95, 108, 327, 650 |