Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

15027809 .. 15029023

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGTGCTTTTCGGTCAACATTTTCTGCTACTACTCCCCGATTTTTCAAGGTTATTGTGGATGAAACTTCTAGCATCAAACTGAAAATTCCACCAAAATTTGTGAAGAAATATGGAGACTACTTATCAAAATCAGTGCGTCTTAAGCTTCCAAGTGGTTGTCAATGGGAAGTGGAAGTGACAGAAAGCGATAGTGAGGCTTGGTTTGAAAAGGGTTGGCAAGAGTTCTTCAAGTTTTACTCTCTAGACAGCGGTCACTTCCTACTTTTTACATACCAAGGGAATTCTATGTTCGAAGTTTGCATATTTGATAGAACTGCAACAGAGACTGAATATCCCATCATTATCGATGACTCTTATGTTGAAGATGATAACTCCATTGAAATCTTAAATGATTTTACCCCCTGCTCTAAAACAAGAGACAAATCTCCATCACCATCTGCTAGGCCTTCCAGAAGAAAGAGAACACTTGGTCCAACTAGTGAAGCCAAAATGAAAGGGAAAGAAGATGATTTTTCTAGGAAAAAAGATGGGGGAGGCTCGTCCAAAGCTCTTGAGAGAGCCAAGGCTTTCAAATCTGAAAATCCTTCCATCATGATAGCCATGCAGCCCCATTATATCCATAATTATACTCTGAATATACCGCTTCGATTTATCATGAGTTTCACGAAACACGGGCGGCAGTTCCTCAAGCTTCAGGTTGGAGATAGATTTTGGTCTGCTTGTTTGAATCTGTCTGAAATCCATCGTACAGCTAAAATTAATCACGGCTGGCATGTATTTGTGAAGGAAAATCATTTAAGTGTAGGAGATGTTTGCATATTTGAGCTCATGAAGGTGAATGACCTTGTACTGAAAGTACACATGTTTAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

292

Amino Acids

33.69

Weight (kDa)

9.03

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	15 - 105	3.2e-16	B3 DNA binding domain
B3	PF02362	202 - 291	7.1e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	252, 644, 679
AcsI	RAATTY	3 cut(s)	87, 98, 283
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	3 cut(s)	751, 852, 861
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	7 cut(s)	49, 209, 232, 365, 383, 574, 730
AhlI	ACTAGT	1 cut(s)	479
AloI	GAACNNNNNNTCC	2 cut(s)	457, 489
AluBI	AGCT	5 cut(s)	148, 551, 694, 755, 829
AluI	AGCT	5 cut(s)	148, 551, 694, 755, 829
Alw21I	GWGCWC	1 cut(s)	831
Alw26I	GTCTC	3 cut(s)	111, 320, 414
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	3 cut(s)	87, 98, 283
AseI	ATTAAT	1 cut(s)	762
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	426, 850
AsuII	TTCGAA	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	831
Bbv12I	GWGCWC	1 cut(s)	831
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	6 cut(s)	347, 439, 445, 524, 599, 753
BceAI	ACGGC	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	111, 320, 414
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	5 cut(s)	72, 245, 444, 480, 519
BfrI	CTTAAG	1 cut(s)	143
BisI	GCNGC	2 cut(s)	608, 680
BlsI	GCNGC	2 cut(s)	609, 681
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	473
BmsI	GCATC	1 cut(s)	84
BoxI	GACNNNNGTC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	575, 674
Bsa29I	ATCGAT	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	277, 564
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	277, 564
BseGI	GGATG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	619
BshFI	GGCC	1 cut(s)	448
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	831
BsmAI	GTCTC	3 cut(s)	111, 320, 414
BsnI	GGCC	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	831
BspACI	CCGC	3 cut(s)	252, 644, 679
BspANI	GGCC	1 cut(s)	448
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	3 cut(s)	594, 657, 831
BspT104I	TTCGAA	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	277, 564
BssT1I	CCWWGG	2 cut(s)	277, 564
BstAFI	CTTAAG	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	773
BstF5I	GGATG	1 cut(s)	67
BstMAI	GTCTC	3 cut(s)	111, 320, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	2 cut(s)	779, 868
BstPAI	GACNNNNGTC	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	619
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	448
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	773
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	3 cut(s)	594, 657, 831
Cfr13I	GGNCC	1 cut(s)	473
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	750, 851, 860
CviAII	CATG	6 cut(s)	595, 604, 658, 776, 832, 865
CviQI	GTAC	3 cut(s)	750, 851, 860
Ecl136II	GAGCTC	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	277, 564
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	829
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	277, 564
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	2 cut(s)	277, 564
FaeI	CATG	6 cut(s)	598, 607, 661, 779, 835, 868
FatI	CATG	6 cut(s)	594, 603, 657, 775, 831, 864
Fnu4HI	GCNGC	2 cut(s)	608, 680
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	2 cut(s)	608, 680
FspBI	CTAG	5 cut(s)	72, 245, 444, 480, 519
GluI	GCNGC	2 cut(s)	608, 680
HaeIII	GGCC	1 cut(s)	448
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	598, 607, 661, 779, 835, 868
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	2 cut(s)	146, 692
HinfI	GANTC	2 cut(s)	353, 730
HphI	GGTGA	2 cut(s)	426, 850
Hpy166II	GTNNAC	2 cut(s)	18, 862
Hpy188I	TCNGA	3 cut(s)	580, 636, 739
Hpy188III	TCNNGA	7 cut(s)	245, 453, 554, 595, 658, 667, 832
Hpy8I	GTNNAC	2 cut(s)	18, 862
HpyAV	CCTTC	4 cut(s)	459, 597, 781, 829
HpyCH4V	TGCA	4 cut(s)	303, 320, 607, 819
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Hsp92II	CATG	6 cut(s)	598, 607, 661, 779, 835, 868
LpnPI	CCDG	4 cut(s)	418, 466, 683, 757
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	5 cut(s)	72, 245, 444, 480, 519
MaeIII	GTNAC	2 cut(s)	178, 254
MboII	GAAGA	5 cut(s)	118, 220, 377, 468, 518
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	5 cut(s)	87, 98, 283, 625, 759
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	500, 682
MnlI	CCTC	4 cut(s)	190, 530, 698, 866
MseI	TTAA	4 cut(s)	144, 389, 762, 800
MslI	CAYNNNNRTG	2 cut(s)	801, 836
MspA1I	CMGCKG	1 cut(s)	252
MspCI	CTTAAG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	145
NlaIII	CATG	6 cut(s)	598, 607, 661, 779, 835, 868
NmuCI	GTSAC	2 cut(s)	178, 254
NspI	RCATGY	2 cut(s)	779, 868
NspV	TTCGAA	1 cut(s)	294
PagI	TCATGA	3 cut(s)	594, 657, 831
PceI	AGGCCT	1 cut(s)	448
PciI	ACATGT	1 cut(s)	864
PfeI	GAWTC	1 cut(s)	730
PkrI	GCNGC	2 cut(s)	609, 681
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PscI	ACATGT	1 cut(s)	864
PshAI	GACNNNNGTC	1 cut(s)	252
PshBI	ATTAAT	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	831
PspPI	GGNCC	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	751, 852, 861
RsaNI	GTAC	3 cut(s)	750, 851, 860
RseI	CAYNNNNRTG	2 cut(s)	801, 836
SacI	GAGCTC	1 cut(s)	831
SaqAI	TTAA	4 cut(s)	144, 389, 762, 800
SatI	GCNGC	2 cut(s)	608, 680
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	831
SetI	ASST	9 cut(s)	54, 150, 553, 696, 702, 757, 831, 840, 849
SfaNI	GCATC	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	294
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	801, 836
SmlI	CTYRAG	3 cut(s)	143, 554, 689
SmoI	CTYRAG	3 cut(s)	143, 554, 689
SpeI	ACTAGT	1 cut(s)	479
Sse9I	AATT	5 cut(s)	87, 98, 283, 625, 759
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	3 cut(s)	252, 644, 679
SspMI	CTAG	5 cut(s)	72, 245, 444, 480, 519
SstI	GAGCTC	1 cut(s)	831
StuI	AGGCCT	1 cut(s)	448
StyI	CCWWGG	2 cut(s)	277, 564
TaqI	TCGA	3 cut(s)	294, 348, 649
TasI	AATT	5 cut(s)	87, 98, 283, 625, 759
TatI	WGTACW	2 cut(s)	850, 859
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	1 cut(s)	730
Tru1I	TTAA	4 cut(s)	144, 389, 762, 800
Tru9I	TTAA	4 cut(s)	144, 389, 762, 800
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	178, 254
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	2 cut(s)	178, 254
TspDTI	ATGAA	3 cut(s)	78, 509, 848
TspRI	CASTG	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	3 cut(s)	87, 98, 283
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	2 cut(s)	779, 868
XspI	CTAG	5 cut(s)	72, 245, 444, 480, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.