Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011039.1

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1331

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011039.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 710 bp

atgtacttgatacaattttctgatggccagagacttccatacaaatttgtgaagaaatatggaggagagctatcacattcagtatgtcttaaggttcggggtggttcaaaatgggaagtggatgttacgagacgggattgtaaggtttggtttgaaaagggttggccagagttctctaattcttgctcccttgaccacggccactttctggttttcggatatgaagggaattctaaattcgatgtttgcatatttgacaaaactgccacagaaattgactatccgataactgttgaagatgatgattcgtctggtgaaattttggaggactgtccaaagggttcaaggaattcaggggataaatctccactcccaggttctcctccttgcaagaaaaacagaaaaagttcaactggcaaaccagaaatcaaccccaagattcaaatggatgatgatgatgatgaagaaaacgatgaaagtgatgagagtagtgaggagggtgaggatgaagataatcatggtattcaaaaggaaacagcttttcagagagctaaagcttataaacccgcagaccctcattttgtggttgcaatcaatccctcttgtacccgtggaggttatctgcatgtgccatctttgtttagcaagacatatcttgttaagcagcctactcaaatcatgcttcaaacggtttcaaacgaggaaccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

236

Amino Acids

26.57

Weight (kDa)

4.89

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	1 cut(s)	567
AcoI	YGGCCR	3 cut(s)	25, 164, 199
AcsI	RAATTY	5 cut(s)	44, 229, 236, 318, 349
AfaI	GTAC	2 cut(s)	5, 607
AfiI	CCNNNNNNNGG	2 cut(s)	208, 374
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	9 cut(s)	108, 155, 296, 345, 411, 443, 527, 686, 696
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	4 cut(s)	70, 539, 551, 557
AluI	AGCT	4 cut(s)	70, 539, 551, 557
Alw26I	GTCTC	2 cut(s)	25, 124
AoxI	GGCC	3 cut(s)	25, 164, 199
ApeKI	GCWGC	1 cut(s)	664
ApoI	RAATTY	5 cut(s)	44, 229, 236, 318, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	326, 512
BalI	TGGCCA	2 cut(s)	27, 166
BbvI	GCAGC	1 cut(s)	676
BccI	CCATC	2 cut(s)	17, 640
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	25, 124
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	665
BlsI	GCNGC	1 cut(s)	666
Bme1390I	CCNGG	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	705
BmrFI	CCNGG	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	196, 373, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 374
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	196, 373, 610
BseGI	GGATG	3 cut(s)	127, 454, 511
BseLI	CCNNNNNNNGG	2 cut(s)	208, 374
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	3 cut(s)	78, 372, 509
BseXI	GCAGC	1 cut(s)	676
BshFI	GGCC	3 cut(s)	27, 166, 201
BslI	CCNNNNNNNGG	2 cut(s)	208, 374
BsmAI	GTCTC	2 cut(s)	25, 124
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	27, 166, 201
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	3 cut(s)	27, 166, 201
BspLI	GGNNCC	1 cut(s)	705
BspTI	CTTAAG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	3 cut(s)	196, 373, 610
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	292, 332, 691
BstAFI	CTTAAG	1 cut(s)	89
BstDSI	CCRYGG	2 cut(s)	196, 610
BstF5I	GGATG	3 cut(s)	127, 454, 511
BstMAI	GTCTC	2 cut(s)	25, 124
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	27, 166, 201
BtgI	CCRYGG	2 cut(s)	196, 610
BtsCI	GGATG	3 cut(s)	127, 454, 511
Csp6I	GTAC	2 cut(s)	4, 606
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	3 cut(s)	518, 626, 679
CviJI	RGCY	8 cut(s)	27, 70, 166, 201, 539, 551, 557, 667
CviKI_1	RGCY	8 cut(s)	27, 70, 166, 201, 539, 551, 557, 667
CviQI	GTAC	2 cut(s)	4, 606
EaeI	YGGCCR	3 cut(s)	25, 164, 199
EcoRI	GAATTC	2 cut(s)	229, 349
EcoRII	CCWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	521, 629, 682
FatI	CATG	3 cut(s)	517, 625, 678
FauI	CCCGC	1 cut(s)	574
Fnu4HI	GCNGC	1 cut(s)	665
FokI	GGATG	3 cut(s)	134, 461, 518
Fsp4HI	GCNGC	1 cut(s)	665
GluI	GCNGC	1 cut(s)	665
HaeIII	GGCC	3 cut(s)	27, 166, 201
Hin1II	CATG	3 cut(s)	521, 629, 682
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	2 cut(s)	305, 439
HphI	GGTGA	2 cut(s)	326, 512
Hpy188I	TCNGA	4 cut(s)	22, 218, 285, 546
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	3 cut(s)	292, 332, 691
HpyCH4V	TGCA	4 cut(s)	249, 390, 590, 625
Hsp92II	CATG	3 cut(s)	521, 629, 682
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	9 cut(s)	41, 180, 194, 297, 339, 360, 387, 399, 435
Lsp1109I	GCAGC	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	124
MboII	GAAGA	4 cut(s)	64, 308, 476, 521
MlsI	TGGCCA	2 cut(s)	27, 166
MluCI	AATT	8 cut(s)	14, 44, 178, 229, 236, 273, 318, 349
MluNI	TGGCCA	2 cut(s)	27, 166
Mox20I	TGGCCA	2 cut(s)	27, 166
MroXI	GAANNNNTTC	1 cut(s)	406
MscI	TGGCCA	2 cut(s)	27, 166
MseI	TTAA	2 cut(s)	90, 660
Msp20I	TGGCCA	2 cut(s)	27, 166
MspCI	CTTAAG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
NlaIII	CATG	3 cut(s)	521, 629, 682
NlaIV	GGNNCC	1 cut(s)	705
NspI	RCATGY	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	305, 439
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	705
RsaI	GTAC	2 cut(s)	5, 607
RsaNI	GTAC	2 cut(s)	4, 606
SaqAI	TTAA	2 cut(s)	90, 660
SatI	GCNGC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	9 cut(s)	72, 96, 147, 379, 541, 553, 559, 619, 709
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	8 cut(s)	14, 44, 178, 229, 236, 273, 318, 349
SsiI	CCGC	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	3 cut(s)	292, 332, 691
TaqI	TCGA	1 cut(s)	240
TasI	AATT	8 cut(s)	14, 44, 178, 229, 236, 273, 318, 349
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	305, 439
Tru1I	TTAA	2 cut(s)	90, 660
Tru9I	TTAA	2 cut(s)	90, 660
TseI	GCWGC	1 cut(s)	664
TspDTI	ATGAA	4 cut(s)	237, 477, 489, 522
Van91I	CCANNNNNTGG	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	89
XapI	RAATTY	5 cut(s)	44, 229, 236, 318, 349
XceI	RCATGY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.