Rh2DG169100
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000156
Physical Location & Seq
Reverse (-)
14786154 .. 14786914
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG169100.1

Sequence Viewer

Length: 555 bp
ATGCATACATGTTTTATCGTTTTCTTATATTCAGGTGGAAGATCAGGAGCAATTTATCAAGTCAAAAGTAAGGGAAGTCCGATAATAGAAGTAGAATCTGAATGCGGTGTGATATGTGGAATTGGTGTATCTGGCTCTCTTGAAACTGGCAAGAACAAAATGTCAAAGACTAGTGTGCAGGTTACTGAAAGGCCCTCTTCATCTTTGACGGCTCCATTGGATAATCATCATGAAGCTGCCAACAACTTCGTCTCAGAGAATCCCTTTTTCAAAGTCACTTTGGGTTCCTCCCATATGGAGAAGTCAGTTGTGCATGTACCAGCTAGTTTTGCTTGGAGTTTCATTAAAAGGAAGAAACAAAAAGTGATGCTTCAGGTCACAGATAGATTGTGGCCTGTGGATTTGATAGAATTTAAGCCATCTTTAGCTTCATTTTCTACTGGCTGGGCCACATTTGTTGAGGAATATTCATTAAGAGTCGGAGATGTTTGCATATTTGAGCTTATGGAGATGAATGATGACATTATACTACAAGTTCATTTTTTCAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

184

Amino Acids

20.52

Weight (kDa)

6.59

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 89 - 182 4.4e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AciI CCGC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 2 cut(s) 143, 271
AhlI ACTAGT 1 cut(s) 170
AluBI AGCT 4 cut(s) 236, 323, 428, 502
AluI AGCT 4 cut(s) 236, 323, 428, 502
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 3 cut(s) 191, 392, 447
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 192, 447
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 256
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 2 cut(s) 171, 324
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 192, 447
BmiI GGNNCC 2 cut(s) 213, 286
BmsI GCATC 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 151, 445
Bse8I GATNNNNATC 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 151, 445
BseXI GCAGC 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 444
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 3 cut(s) 193, 394, 449
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 3 cut(s) 193, 394, 449
Bsp143I GATC 1 cut(s) 41
BspACI CCGC 1 cut(s) 105
BspANI GGCC 3 cut(s) 193, 394, 449
BspCNI CTCAG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 213, 286
BspMI ACCTGC 1 cut(s) 169
BsrI ACTGG 2 cut(s) 151, 445
BssMI GATC 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 253
BstKTI GATC 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 12, 317
BstV1I GCAGC 1 cut(s) 223
BsuRI GGCC 3 cut(s) 193, 394, 449
BveI ACCTGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 192, 447
Csp6I GTAC 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 3 cut(s) 9, 230, 314
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 253
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 3 cut(s) 12, 233, 317
FalI AAGNNNNNCTT 4 cut(s) 181, 213, 354, 386
FatI CATG 3 cut(s) 8, 229, 313
FauNDI CATATG 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 2 cut(s) 171, 324
GluI GCNGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 448
HaeIII GGCC 3 cut(s) 193, 394, 449
Hin1II CATG 3 cut(s) 12, 233, 317
HinfI GANTC 3 cut(s) 95, 259, 477
Hpy188I TCNGA 5 cut(s) 81, 100, 256, 482, 548
Hpy188III TCNNGA 3 cut(s) 45, 140, 230
HpyCH4V TGCA 4 cut(s) 4, 178, 313, 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 3 cut(s) 12, 233, 317
Kzo9I GATC 1 cut(s) 41
LmnI GCTCC 2 cut(s) 47, 217
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 357
MaeI CTAG 2 cut(s) 171, 324
MaeIII GTNAC 3 cut(s) 181, 274, 376
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 3 cut(s) 51, 189, 364
MluCI AATT 3 cut(s) 51, 120, 410
MlyI GAGTC 1 cut(s) 486
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 3 cut(s) 205, 298, 454
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 345, 414, 473
Mva1269I GAATGC 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeI CATATG 1 cut(s) 294
NdeII GATC 1 cut(s) 41
NlaIII CATG 3 cut(s) 12, 233, 317
NlaIV GGNNCC 2 cut(s) 213, 286
NmuCI GTSAC 2 cut(s) 274, 376
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 12, 317
PagI TCATGA 1 cut(s) 229
PciI ACATGT 1 cut(s) 8
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 95, 259
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PscI ACATGT 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 213, 286
PspPI GGNCC 2 cut(s) 192, 447
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 3 cut(s) 345, 414, 473
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 41
Sau96I GGNCC 2 cut(s) 192, 447
SchI GAGTC 1 cut(s) 486
SetI ASST 7 cut(s) 37, 183, 238, 325, 378, 430, 504
SfaNI GCATC 1 cut(s) 357
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 3 cut(s) 51, 120, 410
SsiI CCGC 1 cut(s) 105
SspI AATATT 1 cut(s) 467
SspMI CTAG 2 cut(s) 171, 324
TasI AATT 3 cut(s) 51, 120, 410
TfiI GAWTC 2 cut(s) 95, 259
Tru1I TTAA 3 cut(s) 345, 414, 473
Tru9I TTAA 3 cut(s) 345, 414, 473
TseFI GTSAC 2 cut(s) 274, 376
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 274, 376
TspDTI ATGAA 7 cut(s) 189, 246, 331, 420, 459, 527, 527
XapI RAATTY 1 cut(s) 410
XceI RCATGY 2 cut(s) 12, 317
XspI CTAG 2 cut(s) 171, 324
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.