Rh2CG479000
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000156
Physical Location & Seq
Forward (+)
64388824 .. 64402913
14090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG479000.1

Sequence Viewer

Length: 732 bp
ATGTCCAGAAAGCTCTTGAAGTTGAGCAATGGCTTCTCTTCGCCCGCTGAGATTTTGTTCTACCACTCCCCATTTTTTCAAGATCATTCTGGAGGACACTTCTCGACACAAACTTGCCATGGCAGAGGAGCAACTGTTCAAGTCCGAGAAATGAAACGCCCCCTAGTTAAAGTTGAATCCAAATGCGGCATGAATTGGGAAATTGGTTATGGCAGAGGAGGAATTGTTCAATTTGAAAAAACAAGAAGCCCTGCAGTAAAAATTGAAGCTGAATGCAACATGGATTGTGAAATTGGTCCCTCTTGCTCTCTTGAAATTGGCAACAAAATGTCAAAAATGAGTGTGCAGGTTACTCAAAGGCCTTCTTCATCTTTGAGGGCTTCAGATGTTAATCTTGAAGTTGCCAACAAGTTTTCCTCGAAGAATCCCTTCTTCAAAATCACTATCGGGTCAGGCCATTCTGTGCATGTCCCAGTTAAATTTTCTAGCAGTTTCATCAAACAGAAGAAGCAAACAGTGATGCTTCAGGTCAAAGATACATTCTGGCCTGTGAATTTAATTTCTAGTAAGCCGTGTTCAACTTCAATTTGTGGCGGTTGGGCTGCATTTTCCAAGGAAAGTTGTTTAAGAGAAGGAGATGTTTGCATATTTGAGCTCATAGAGATGAATGACATTGTACTGAAAGTTCACATATTTAGATATTGCTTAGAAGGGGAAAGTAATGTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

243

Amino Acids

27.04

Weight (kDa)

8.99

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 150 - 233 4.2e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AciI CCGC 3 cut(s) 45, 186, 594
AcsI RAATTY 2 cut(s) 479, 553
AcuI CTGAAG 2 cut(s) 366, 509
AfaI GTAC 1 cut(s) 678
AloI GAACNNNNNNTCC 4 cut(s) 120, 152, 210, 242
AluBI AGCT 3 cut(s) 13, 269, 655
AluI AGCT 3 cut(s) 13, 269, 655
Alw21I GWGCWC 1 cut(s) 657
AoxI GGCC 3 cut(s) 359, 454, 545
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 2 cut(s) 479, 553
Asp700I GAANNNNTTC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 1 cut(s) 589
BceAI ACGGC 1 cut(s) 556
BfaI CTAG 3 cut(s) 164, 486, 564
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 2 cut(s) 187, 603
BlsI GCNGC 2 cut(s) 188, 604
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 467
BmsI GCATC 1 cut(s) 510
BmuI ACTGGG 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 118, 612
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 210, 240
Bse1I ACTGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 118, 612
BseJI GATNNNNATC 1 cut(s) 390
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 141, 231
BseXI GCAGC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 3 cut(s) 361, 456, 547
BsiHKAI GWGCWC 1 cut(s) 657
BslFI GGGAC 2 cut(s) 282, 455
BsmFI GGGAC 2 cut(s) 282, 455
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 3 cut(s) 361, 456, 547
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 3 cut(s) 45, 186, 594
BspANI GGCC 3 cut(s) 361, 456, 547
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 2 cut(s) 118, 612
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 118, 612
Bst4CI ACNGT 2 cut(s) 136, 517
Bst6I CTCTTC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 48, 706
BstDSI CCRYGG 1 cut(s) 118
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 470
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 589
BsuRI GGCC 3 cut(s) 361, 456, 547
BtgI CCRYGG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 522
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 677
CviAII CATG 4 cut(s) 119, 190, 280, 467
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 2 cut(s) 48, 706
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 118, 612
Eco147I AGGCCT 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 655
Eco57I CTGAAG 2 cut(s) 366, 509
EcoICRI GAGCTC 1 cut(s) 655
EcoT14I CCWWGG 2 cut(s) 118, 612
EcoT38I GRGCYC 1 cut(s) 657
ErhI CCWWGG 2 cut(s) 118, 612
FaeI CATG 4 cut(s) 122, 193, 283, 470
FaiI YATR 8 cut(s) 120, 191, 210, 281, 468, 647, 659, 692
FalI AAGNNNNNCTT 4 cut(s) 349, 381, 413, 445
FaqI GGGAC 2 cut(s) 282, 455
FatI CATG 4 cut(s) 118, 189, 279, 466
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 187, 603
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 2 cut(s) 187, 603
FspBI CTAG 3 cut(s) 164, 486, 564
GluI GCNGC 2 cut(s) 187, 603
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 3 cut(s) 361, 456, 547
Hin1II CATG 4 cut(s) 122, 193, 283, 470
HinfI GANTC 2 cut(s) 176, 424
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 2 cut(s) 146, 385
Hpy188III TCNNGA 7 cut(s) 6, 16, 80, 90, 103, 311, 395
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 4 cut(s) 372, 439, 626, 704
HpyCH4III ACNGT 2 cut(s) 136, 517
HpyCH4V TGCA 6 cut(s) 254, 276, 346, 466, 605, 645
HpyF3I CTNAG 2 cut(s) 48, 706
Hsp92II CATG 4 cut(s) 122, 193, 283, 470
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 9 cut(s) 19, 75, 264, 332, 438, 486, 512, 529, 561
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 1 cut(s) 510
MaeI CTAG 3 cut(s) 164, 486, 564
MaeIII GTNAC 1 cut(s) 349
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 5 cut(s) 30, 357, 424, 433, 517
MhlI GDGCHC 1 cut(s) 657
MnlI CCTC 7 cut(s) 86, 119, 209, 212, 310, 369, 427
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 5 cut(s) 168, 390, 477, 557, 626
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 278
NcoI CCATGG 1 cut(s) 118
NdeII GATC 1 cut(s) 82
NlaIII CATG 4 cut(s) 122, 193, 283, 470
NlaIV GGNNCC 1 cut(s) 298
NspI RCATGY 1 cut(s) 470
PceI AGGCCT 1 cut(s) 361
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 176, 424
PkrI GCNGC 2 cut(s) 188, 604
Psp124BI GAGCTC 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 296
PsrI GAACNNNNNNTAC 4 cut(s) 559, 591, 669, 701
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 657
SaqAI TTAA 5 cut(s) 168, 390, 477, 557, 626
SatI GCNGC 2 cut(s) 187, 603
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 657
SetI ASST 5 cut(s) 15, 271, 351, 531, 657
SfaNI GCATC 1 cut(s) 510
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 662
SseBI AGGCCT 1 cut(s) 361
SsiI CCGC 3 cut(s) 45, 186, 594
SspMI CTAG 3 cut(s) 164, 486, 564
SstI GAGCTC 1 cut(s) 657
StuI AGGCCT 1 cut(s) 361
StyI CCWWGG 2 cut(s) 118, 612
TaaI ACNGT 2 cut(s) 136, 517
TaqI TCGA 2 cut(s) 104, 419
TatI WGTACW 1 cut(s) 676
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 176, 424
Tru1I TTAA 5 cut(s) 168, 390, 477, 557, 626
Tru9I TTAA 5 cut(s) 168, 390, 477, 557, 626
TscAI CASTG 1 cut(s) 522
TseI GCWGC 1 cut(s) 602
TspDTI ATGAA 5 cut(s) 167, 206, 357, 484, 680
TspRI CASTG 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 2 cut(s) 479, 553
XceI RCATGY 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 3 cut(s) 164, 486, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.