Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

52652140 .. 52655740

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG410200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACTTCGTATCTTAGCCGGGAATTTGACCACCGGAAATTCGGTTCCCAGCCCACATTTCTTTCCACTACTCCCCACTTCTTGAGTATTATTCTAGATGACACTTCTAGAGTCATTAAACTGGGGATTCCGGAGGAGTTTGTGTCTAAATATGGAAAAGATCTGTCAAATTCAGTAACTTTTAGGCTTCCATGTGGTTCAGAATGGGAAGTAGGATTGACAAGGTACAATGGTGAGGTTTGGTTTGAGAAGGGTTGGCCAGACTTCTCGAAGTTTTACTCTCTTGGCTACAACGACCTGCTGGTTTTCGGATATGAAGGGAAGTCTAGATTTCAGGTTTCCATATTTGATAAAAGCACAATTGAGATCGAGTATCCCGTTAAAGTGCCAAACATTGAAGAAAGTGATGAACATGATGATTCCACTGTTGAAATCTTGGAGGATTTTCCACTGTATCTAAGAAAAGCAAGAGAGACATCTCGACTACCAAGTCCTCTGCCTCGCGTGAAAAACAGAACAATTTCAAGTGGCACTGCAAAAATCAATCTCGGGAAAGACCATTTCCCAGTGAAAAAAGAATGGGGAAGCACTTCTCGCACTAAGCGATTCCAAAAACAAACTCCAGAGGTTCATTCAAAGGCTAATGTTTTCAAATCTCACAACTGCCCTTTCAGAATGGTCATCCGCCCCTCCTATTTCAATCAAAATCTTTTGAGACAAAGGAAAACCTTAAATCCAGTATTACGTCAAACTCAACTCGACCAAGACAAGGTGTATTACCCAATACGACAGGATCAGATCTTAGTGACGAAGCCACGAAGGAGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

32.26

Weight (kDa)

9.47

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	34 - 118	1e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	306
AccII	CGCG	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	1 cut(s)	801
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	3 cut(s)	23, 38, 169
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	6 cut(s)	398, 431, 525, 636, 652, 700
AloI	GAACNNNNNNTCC	2 cut(s)	28, 60
Alw26I	GTCTC	2 cut(s)	467, 709
AlwI	GGATC	1 cut(s)	801
Ama87I	CYCGRG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	1 cut(s)	257
ApoI	RAATTY	3 cut(s)	23, 38, 169
Asp700I	GAANNNNTTC	2 cut(s)	520, 589
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	548
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BalI	TGGCCA	1 cut(s)	259
BciVI	GTATCC	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	2 cut(s)	467, 709
BfaI	CTAG	3 cut(s)	95, 108, 327
BfuAI	ACCTGC	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	384
BglII	AGATCT	2 cut(s)	160, 798
Bme1390I	CCNGG	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	2 cut(s)	131, 560
BmuI	ACTGGG	2 cut(s)	131, 560
BpmI	CTGGAG	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	20
BsaWI	WCCGGW	2 cut(s)	33, 130
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	3 cut(s)	126, 566, 737
BseAI	TCCGGA	1 cut(s)	130
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseNI	ACTGG	3 cut(s)	126, 566, 737
BseRI	GAGGAG	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	3 cut(s)	19, 34, 131
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	2 cut(s)	467, 709
BsnI	GGCC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	548
Bsp13I	TCCGGA	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	160, 366, 793, 798
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	801
BsrI	ACTGG	3 cut(s)	126, 566, 737
BssMI	GATC	4 cut(s)	160, 366, 793, 798
Bst4CI	ACNGT	2 cut(s)	427, 453
BstDEI	CTNAG	4 cut(s)	14, 458, 600, 802
BstF5I	GGATG	1 cut(s)	681
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	4 cut(s)	163, 369, 796, 801
BstMAI	GTCTC	2 cut(s)	467, 709
BstMBI	GATC	4 cut(s)	160, 366, 793, 798
BstMWI	GCNNNNNNNGC	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	504
BstX2I	RGATCY	2 cut(s)	160, 798
BstYI	RGATCY	2 cut(s)	160, 798
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	4 cut(s)	423, 449, 531, 573
BveI	ACCTGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	192, 413
CviJI	RGCY	7 cut(s)	18, 52, 187, 259, 288, 641, 814
CviKI_1	RGCY	7 cut(s)	18, 52, 187, 259, 288, 641, 814
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	4 cut(s)	14, 458, 600, 802
DpnI	GATC	4 cut(s)	162, 368, 795, 800
DpnII	GATC	4 cut(s)	160, 366, 793, 798
DrdI	GACNNNNNNGTC	1 cut(s)	489
DseDI	GACNNNNNNGTC	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	548
FaeI	CATG	2 cut(s)	195, 416
FaiI	YATR	5 cut(s)	153, 193, 315, 344, 414
FalI	AAGNNNNNCTT	1 cut(s)	811
FatI	CATG	2 cut(s)	191, 412
FokI	GGATG	1 cut(s)	668
FspBI	CTAG	3 cut(s)	95, 108, 327
GsaI	CCCAGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	3 cut(s)	19, 34, 131
Hin1II	CATG	2 cut(s)	195, 416
HinfI	GANTC	5 cut(s)	111, 127, 419, 606, 823
HpaII	CCGG	3 cut(s)	19, 34, 131
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	202, 311, 674, 798
Hpy188III	TCNNGA	9 cut(s)	82, 95, 108, 131, 268, 327, 480, 550, 623
HpyAV	CCTTC	3 cut(s)	244, 311, 813
HpyCH4III	ACNGT	2 cut(s)	427, 453
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	594
HpyF3I	CTNAG	4 cut(s)	14, 458, 600, 802
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	2 cut(s)	195, 416
Kpn2I	TCCGGA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	160, 366, 793, 798
MaeI	CTAG	3 cut(s)	95, 108, 327
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	2 cut(s)	175, 805
MalI	GATC	4 cut(s)	162, 368, 795, 800
MboI	GATC	4 cut(s)	160, 366, 793, 798
MboII	GAAGA	1 cut(s)	410
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	2 cut(s)	160, 798
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	5 cut(s)	23, 38, 169, 360, 519
MluNI	TGGCCA	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	127, 229, 433, 504, 510, 619, 700
Mox20I	TGGCCA	1 cut(s)	259
MroI	TCCGGA	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	520, 589
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	3 cut(s)	117, 381, 731
Msp20I	TGGCCA	1 cut(s)	259
MspI	CCGG	3 cut(s)	19, 34, 131
MspR9I	CCNGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	594
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	4 cut(s)	160, 366, 793, 798
NlaIII	CATG	2 cut(s)	195, 416
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	805
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 601
PdmI	GAANNNNTTC	2 cut(s)	520, 589
PfeI	GAWTC	3 cut(s)	127, 419, 606
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	46
PsuI	RGATCY	2 cut(s)	160, 798
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	117, 381, 731
Sau3AI	GATC	4 cut(s)	160, 366, 793, 798
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	8 cut(s)	227, 240, 300, 339, 630, 731, 748, 774
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	5 cut(s)	23, 38, 169, 360, 519
SsiI	CCGC	1 cut(s)	685
SspMI	CTAG	3 cut(s)	95, 108, 327
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	427, 453
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	4 cut(s)	269, 369, 481, 759
TasI	AATT	5 cut(s)	23, 38, 169, 360, 519
TfiI	GAWTC	3 cut(s)	127, 419, 606
Tru1I	TTAA	3 cut(s)	117, 381, 731
Tru9I	TTAA	3 cut(s)	117, 381, 731
TscAI	CASTG	4 cut(s)	430, 456, 538, 573
TseFI	GTSAC	1 cut(s)	805
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	3 cut(s)	330, 423, 620
TspRI	CASTG	4 cut(s)	430, 456, 538, 573
XapI	RAATTY	3 cut(s)	23, 38, 169
XbaI	TCTAGA	3 cut(s)	94, 107, 326
XmnI	GAANNNNTTC	2 cut(s)	520, 589
XspI	CTAG	3 cut(s)	95, 108, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.