Rroxscaffold_2G00139580

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000156
Physical Location & Seq
Forward (+)
77932006 .. 77935078
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139580.1

Sequence Viewer

Length: 1602 bp
ATGAATTCTTTTAGCCGGGAAAACGACGGCCGCCGGCCAATATGTTGTTCTCCGACTCCCCGTTTTATCCAGGTTATCTTGGATGATACTTCTAGAGACGTCAAACTTGGCATTCCAAAGAAATTTGTGAATGAATATGGTCAGTTTCTATCAAATTCAGTATGTCTTAAGCTTCCAAGTGGCTCTGAATGGGAAGTGGAAGTGACAAGAAGCAATGAAAAGGTTTGGTTTGAGAAGTGTTGGCCGGAGTTCTCAAAGTTTTACTCTCTTAGCGTCGGTGATTTTCTAGTTTTTGAATATGAAGGGAATTCTGAATTCCACGTTTTCATATTTGATAGAAGCACCACAGAGATTGACTATCCCATAAAAAGGCCCAAGATGGAAGAAGCTCCTGAAGATGAATTTTCTGTTGAAATCTTGGAGGACATTCCACCCAGCCCAAAAACAAGGGAAAAAACTCCATTACCGTGTCGTCAATCTTACAAGAAAATGAAGACAAGTTTGACTGGTAAAGCAGACCAGATGTTTGAAAATGAGAACACCAAACCTTTTGAGAATCCAAAGAAAAACAAAGATTCTCATTGCTTTGCATCAAAAATCAAAAGTGTAGGTGGTTTTCCAGCAAAAATAGATGGCGGAGGCTCATCTAGCACTGAGAGGTTTTTAAAGCAAACACCTGAGTTTTGCGGGGAGAAGCATACATCAAATATAAATGAAAAAGCCTCAATACAGAGAAACATTGCTTCCAAATCTGAAAAGCCTTATTTCAAGGTTGTCATGCAGCACTCATATATTCAAAAAGGTTATTTGTCTGTGCCATCTGAGTTTTCCAAGAGACATCTTACAAAGAAGCCTGCTACTGTGATCCTTCAAGTTTTGGATGGAAGAACTTGGTCCGTTCAATTGAAGTATCATCATGAACGCTCAGAAGCTAGATTCCAGAGTTGTTGGCCAGTATTTGTAAGGGAGAATAATTTGAAAGTTGGTGATGCATGTGTCTTTACCTTAATTAACTGCATTGCATTTGTATTTGAAGTGGTCTTTTATCCTGCTGCAAAAGCTGCAAATTGCCCCTTGTCACCAGGTGGAAGAGGAGCAATTTATCAAGTCAAAAGTAAGGGAAGTCCGATAATAGAAGTAGAATCTGAATGTGGTGTGATATGTGGAATTGGTGTATCTGGCTCTCTCGAAACTGGCAAGAACAAAATGTCAAAGACTAGTGTGCAGGTTACTGAAAGGCCCTCTTCATCTTTGACGGCTCCAGGGGATAATCATCATGAAGCTGCCAACAACTTCGTCTCAGAGAATCCCTTTTTCAAAGTCACTTTGGGTTCCTCCCATATGGAGAAGTCAGTTGTGCATGTACCAGCTAGTTTTGCTTGGAGTTTCACTAAAAGGAAGAAACAAAAAGTGATGCTTCAGGTCACAGATAGATTTTGGCCAGTGGATTTGATAGCATATAAGCCATCTTTAGCTTCATTTTCTTCTGGCTGGGCCACATTTGTTGAGGAATATTCATTAAGAGTCGGAGATGTTTGCATATTTGAGCTTATGGAGATGAATGATGACATTATACTACAAGTTCATTTTTTCAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

533

Amino Acids

60.37

Weight (kDa)

8.46

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 28 - 113 7.2e-16 B3 DNA binding domain
B3 PF02362 256 - 338 8.5e-18 B3 DNA binding domain
B3 PF02362 438 - 531 1e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 1216
AciI CCGC 3 cut(s) 31, 636, 687
AclWI GGATC 1 cut(s) 859
AcoI YGGCCR 5 cut(s) 28, 35, 242, 950, 1439
AcsI RAATTY 6 cut(s) 4, 122, 154, 307, 314, 401
AcuI CTGAAG 2 cut(s) 414, 1403
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 1 cut(s) 1365
AfiI CCNNNNNNNGG 1 cut(s) 369
AflII CTTAAG 1 cut(s) 167
AhlI ACTAGT 1 cut(s) 1217
AjnI CCWGG 3 cut(s) 69, 1081, 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 8 cut(s) 172, 389, 932, 1061, 1283, 1370, 1475, 1549
AluI AGCT 8 cut(s) 172, 389, 932, 1061, 1283, 1370, 1475, 1549
Alw26I GTCTC 3 cut(s) 90, 829, 1303
AlwI GGATC 1 cut(s) 859
AoxI GGCC 8 cut(s) 28, 35, 242, 371, 950, 1238, 1439, 1494
ApeKI GCWGC 4 cut(s) 781, 1052, 1061, 1283
ApoI RAATTY 6 cut(s) 4, 122, 154, 307, 314, 401
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AspS9I GGNCC 4 cut(s) 372, 894, 1239, 1494
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 290, 998, 1071
AvaII GGWCC 1 cut(s) 894
BalI TGGCCA 2 cut(s) 952, 1441
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 4 cut(s) 793, 1039, 1048, 1270
BccI CCATC 5 cut(s) 373, 626, 826, 875, 1474
BceAI ACGGC 2 cut(s) 43, 1272
BciT130I CCWGG 3 cut(s) 71, 1083, 1263
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 3 cut(s) 90, 829, 1303
BcuI ACTAGT 1 cut(s) 1217
BfaI CTAG 6 cut(s) 93, 287, 648, 933, 1218, 1371
BfrI CTTAAG 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 1216
BisI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1284
BlsI GCNGC 5 cut(s) 32, 783, 1054, 1063, 1285
Bme1390I CCNGG 4 cut(s) 17, 71, 1083, 1263
Bme18I GGWCC 1 cut(s) 894
BmgT120I GGNCC 4 cut(s) 372, 894, 1239, 1494
BmiI GGNNCC 2 cut(s) 1260, 1333
BmrFI CCNGG 4 cut(s) 17, 71, 1083, 1263
BmsI GCATC 3 cut(s) 599, 979, 1404
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 1245
BpuMI CCSGG 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 1272
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 1262
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 4 cut(s) 511, 953, 1198, 1442
Bse3DI GCAATG 4 cut(s) 220, 580, 738, 1017
Bse8I GATNNNNATC 1 cut(s) 1272
BseBI CCWGG 3 cut(s) 71, 1083, 1263
BseDI CCNNGG 1 cut(s) 1262
BseGI GGATG 2 cut(s) 88, 886
BseJI GATNNNNATC 1 cut(s) 1272
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMI GCAATG 4 cut(s) 220, 580, 738, 1017
BseMII CTCAG 5 cut(s) 645, 669, 813, 939, 1314
BseNI ACTGG 4 cut(s) 511, 953, 1198, 1442
BseRI GAGGAG 1 cut(s) 1107
BseX3I CGGCCG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 793, 1039, 1048, 1270
BseYI CCCAGC 2 cut(s) 434, 1491
BsgI GTGCAG 1 cut(s) 1244
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1240, 1441, 1496
BsiEI CGRYCG 1 cut(s) 31
BsiSI CCGG 3 cut(s) 16, 34, 245
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 3 cut(s) 90, 829, 1303
BsmBI CGTCTC 2 cut(s) 90, 1303
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1240, 1441, 1496
Bsp143I GATC 1 cut(s) 864
BspACI CCGC 3 cut(s) 31, 636, 687
BspANI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1240, 1441, 1496
BspCNI CTCAG 5 cut(s) 646, 670, 814, 938, 1313
BspHI TCATGA 2 cut(s) 916, 1276
BspLI GGNNCC 2 cut(s) 1260, 1333
BspMI ACCTGC 1 cut(s) 1216
BspPI GGATC 1 cut(s) 859
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 4 cut(s) 220, 580, 738, 1017
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 4 cut(s) 511, 953, 1198, 1442
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 1262
BssMI GATC 1 cut(s) 864
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 3 cut(s) 71, 1083, 1263
Bst4CI ACNGT 2 cut(s) 468, 862
Bst6I CTCTTC 2 cut(s) 1084, 1249
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 1061
BstC8I GCNNGC 2 cut(s) 35, 855
BstDEI CTNAG 6 cut(s) 269, 654, 678, 822, 925, 1300
BstF5I GGATG 2 cut(s) 88, 886
BstKTI GATC 1 cut(s) 867
BstMAI GTCTC 3 cut(s) 90, 829, 1303
BstMBI GATC 1 cut(s) 864
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 648, 1058, 1061, 1376
BstNI CCWGG 3 cut(s) 71, 1083, 1263
BstNSI RCATGY 2 cut(s) 996, 1364
BstSCI CCNGG 4 cut(s) 15, 69, 1081, 1261
BstV1I GCAGC 4 cut(s) 793, 1039, 1048, 1270
BstV2I GAAGAC 1 cut(s) 500
BstZI CGGCCG 1 cut(s) 28
BsuRI GGCC 8 cut(s) 30, 37, 244, 373, 952, 1240, 1441, 1496
BtsCI GGATG 2 cut(s) 88, 886
BtsIMutI CAGTG 2 cut(s) 651, 1449
BveI ACCTGC 1 cut(s) 1216
Cac8I GCNNGC 2 cut(s) 35, 855
CciI TCATGA 2 cut(s) 916, 1276
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 4 cut(s) 372, 894, 1239, 1494
CseI GACGC 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 1081
Csp6I GTAC 1 cut(s) 1364
CspCI CAANNNNNGTGG 4 cut(s) 334, 369, 1486, 1521
CviAII CATG 5 cut(s) 778, 917, 993, 1277, 1361
CviQI GTAC 1 cut(s) 1364
DdeI CTNAG 6 cut(s) 269, 654, 678, 822, 925, 1300
DpnI GATC 1 cut(s) 866
DpnII GATC 1 cut(s) 864
DraI TTTAAA 1 cut(s) 666
DraIII CACNNNGTG 1 cut(s) 1085
EaeI YGGCCR 5 cut(s) 28, 35, 242, 950, 1439
EagI CGGCCG 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 1084, 1249
EarI CTCTTC 2 cut(s) 1084, 1249
EciI GGCGGA 1 cut(s) 651
EclXI CGGCCG 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 894
Eco52I CGGCCG 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 414, 1403
EcoO109I RGGNCCY 1 cut(s) 1239
EcoRI GAATTC 3 cut(s) 4, 307, 314
EcoRII CCWGG 3 cut(s) 69, 1081, 1261
EcoT22I ATGCAT 1 cut(s) 994
Esp3I CGTCTC 2 cut(s) 90, 1303
FaeI CATG 5 cut(s) 781, 920, 996, 1280, 1364
FalI AAGNNNNNCTT 4 cut(s) 1228, 1260, 1401, 1433
FatI CATG 5 cut(s) 777, 916, 992, 1276, 1360
FauI CCCGC 1 cut(s) 680
FauNDI CATATG 1 cut(s) 1341
Fnu4HI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1284
FokI GGATG 2 cut(s) 95, 893
Fsp4HI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1284
FspBI CTAG 6 cut(s) 93, 287, 648, 933, 1218, 1371
GluI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1284
GsaI CCCAGC 2 cut(s) 438, 1495
GsuI CTGGAG 1 cut(s) 1245
HaeIII GGCC 8 cut(s) 30, 37, 244, 373, 952, 1240, 1441, 1496
HapII CCGG 3 cut(s) 16, 34, 245
HgaI GACGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 5 cut(s) 781, 920, 996, 1280, 1364
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 7 cut(s) 55, 556, 575, 936, 1142, 1306, 1524
HpaII CCGG 3 cut(s) 16, 34, 245
HphI GGTGA 3 cut(s) 290, 998, 1071
Hpy188III TCNNGA 6 cut(s) 93, 392, 917, 940, 1187, 1277
Hpy99I CGWCG 2 cut(s) 29, 278
HpyAV CCTTC 2 cut(s) 296, 878
HpyCH4III ACNGT 2 cut(s) 468, 862
HpyCH4IV ACGT 2 cut(s) 99, 321
HpyF10VI GCNNNNNNNGC 4 cut(s) 648, 1058, 1061, 1376
HpyF3I CTNAG 6 cut(s) 269, 654, 678, 822, 925, 1300
HpySE526I ACGT 2 cut(s) 99, 321
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 5 cut(s) 781, 920, 996, 1280, 1364
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 864
LmnI GCTCC 3 cut(s) 394, 1094, 1264
Lsp1109I GCAGC 4 cut(s) 793, 1039, 1048, 1270
LweI GCATC 3 cut(s) 599, 979, 1404
MabI ACCWGGT 1 cut(s) 1081
MaeI CTAG 6 cut(s) 93, 287, 648, 933, 1218, 1371
MaeII ACGT 2 cut(s) 99, 321
MaeIII GTNAC 5 cut(s) 202, 1077, 1228, 1321, 1423
MalI GATC 1 cut(s) 866
MboI GATC 1 cut(s) 864
MboII GAAGA 8 cut(s) 395, 407, 505, 897, 1101, 1236, 1411, 1476
MfeI CAATTG 1 cut(s) 902
MlsI TGGCCA 2 cut(s) 952, 1441
MluNI TGGCCA 2 cut(s) 952, 1441
MlyI GAGTC 2 cut(s) 49, 1533
MmeI TCCRAC 2 cut(s) 77, 1507
MnlI CCTC 8 cut(s) 415, 632, 651, 733, 1085, 1252, 1345, 1501
Mox20I TGGCCA 2 cut(s) 952, 1441
Mph1103I ATGCAT 1 cut(s) 994
MroNI GCCGGC 1 cut(s) 33
MscI TGGCCA 2 cut(s) 952, 1441
MseI TTAA 5 cut(s) 168, 665, 1007, 1011, 1520
MslI CAYNNNNRTG 1 cut(s) 466
Msp20I TGGCCA 2 cut(s) 952, 1441
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 3 cut(s) 16, 34, 245
MspR9I CCNGG 4 cut(s) 17, 71, 1083, 1263
MunI CAATTG 1 cut(s) 902
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 3 cut(s) 71, 1083, 1263
MwoI GCNNNNNNNGC 4 cut(s) 648, 1058, 1061, 1376
NaeI GCCGGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 17
NdeI CATATG 1 cut(s) 1341
NdeII GATC 1 cut(s) 864
NgoMIV GCCGGC 1 cut(s) 33
NlaIII CATG 5 cut(s) 781, 920, 996, 1280, 1364
NlaIV GGNNCC 2 cut(s) 1260, 1333
NmuCI GTSAC 4 cut(s) 202, 1077, 1321, 1423
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 2 cut(s) 996, 1364
PacI TTAATTAA 1 cut(s) 1011
PagI TCATGA 2 cut(s) 916, 1276
PctI GAATGC 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 35
PfeI GAWTC 5 cut(s) 556, 575, 936, 1142, 1306
PkrI GCNGC 5 cut(s) 32, 783, 1054, 1063, 1285
PleI GAGTC 2 cut(s) 49, 1532
PpsI GAGTC 2 cut(s) 49, 1532
Psp6I CCWGG 3 cut(s) 69, 1081, 1261
PspFI CCCAGC 2 cut(s) 434, 1491
PspGI CCWGG 3 cut(s) 69, 1081, 1261
PspN4I GGNNCC 2 cut(s) 1260, 1333
PspPI GGNCC 4 cut(s) 372, 894, 1239, 1494
RsaI GTAC 1 cut(s) 1365
RsaNI GTAC 1 cut(s) 1364
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 5 cut(s) 168, 665, 1007, 1011, 1520
SatI GCNGC 5 cut(s) 31, 782, 1053, 1062, 1284
Sau3AI GATC 1 cut(s) 864
Sau96I GGNCC 4 cut(s) 372, 894, 1239, 1494
SchI GAGTC 2 cut(s) 49, 1533
ScrFI CCNGG 4 cut(s) 17, 71, 1083, 1263
SexAI ACCWGGT 1 cut(s) 1081
SfaNI GCATC 3 cut(s) 599, 979, 1404
SinI GGWCC 1 cut(s) 894
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 1217
SsiI CCGC 3 cut(s) 31, 636, 687
SspI AATATT 1 cut(s) 1514
SspMI CTAG 6 cut(s) 93, 287, 648, 933, 1218, 1371
StyD4I CCNGG 4 cut(s) 15, 69, 1081, 1261
TaaI ACNGT 2 cut(s) 468, 862
TaiI ACGT 2 cut(s) 102, 324
TaqI TCGA 1 cut(s) 1188
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 5 cut(s) 556, 575, 936, 1142, 1306
Tru1I TTAA 5 cut(s) 168, 665, 1007, 1011, 1520
Tru9I TTAA 5 cut(s) 168, 665, 1007, 1011, 1520
TscAI CASTG 2 cut(s) 658, 1449
TseFI GTSAC 4 cut(s) 202, 1077, 1321, 1423
TseI GCWGC 4 cut(s) 781, 1052, 1061, 1283
Tsp45I GTSAC 4 cut(s) 202, 1077, 1321, 1423
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 2 cut(s) 658, 1449
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 894
XapI RAATTY 6 cut(s) 4, 122, 154, 307, 314, 401
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 2 cut(s) 996, 1364
XspI CTAG 6 cut(s) 93, 287, 648, 933, 1218, 1371
ZraI GACGTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.