Rmu_sc0031822.1_g000001

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031822.1
OG0000156
Physical Location & Seq
Forward (+)
1525 .. 2154
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031822.1_g000001.1.cds

Sequence Viewer

Length: 630 bp
atgaaatatggagaagatgtatcaaattcagcttttcttaagcttccaagcggttctgagtgggaagtggaattgacaaggtgcaacggtaaggtttggtttgaaaggggctggccagagttctctaagttctgctctttagactacggtgacttcctagtttttcgatatgaagggaattctatattccaagtttgcatattcgatagaactgccacagaaattgattatcccataaaaatgcccgatatggaaaagacggatcatgaagatgaagaagatgataatatatctattgaaatctccgaggattctccaccccacccgaaaacaagggagaaatctccattaccatgccctccatcattcaaaaaaatgagaacaagttggagtggtaaagcagccgacacgatgtttggaaatgatggcggaggctcgtctagtgcacgaagataccagaagggaacagttgaggctattggggaaatgcattcactgaataaaagtgaaaaagctcaagctctatggagagttgatgctttcatatctgaaaaccctcacttcaaggtcgtgttgcagccttcatatgtgcaacaaagttatttggtaaggaagctgatagaactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

209

Amino Acids

23.93

Weight (kDa)

5.13

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 429
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 25, 178
AflII CTTAAG 1 cut(s) 38
AgsI TTSAA 4 cut(s) 104, 299, 370, 565
AluBI AGCT 5 cut(s) 32, 43, 515, 521, 616
AluI AGCT 5 cut(s) 32, 43, 515, 521, 616
Alw21I GWGCWC 1 cut(s) 448
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 113
ApaLI GTGCAC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 401, 577
ApoI RAATTY 2 cut(s) 25, 178
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 448
BalI TGGCCA 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 413, 589
BccI CCATC 2 cut(s) 370, 419
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BfaI CTAG 2 cut(s) 158, 441
BfrI CTTAAG 1 cut(s) 38
BisI GCNGC 2 cut(s) 402, 578
BlsI GCNGC 2 cut(s) 403, 579
BmsI GCATC 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 2 cut(s) 413, 589
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 2 cut(s) 51, 429
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 265
BspPI GGATC 1 cut(s) 270
BspTI CTTAAG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 3 cut(s) 89, 149, 469
BstAFI CTTAAG 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 57, 126
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 413, 589
BsuRI GGCC 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 113
CciI TCATGA 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 266, 354
DdeI CTNAG 2 cut(s) 57, 126
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 113
EciI GGCGGA 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 492
FaeI CATG 2 cut(s) 269, 357
FatI CATG 2 cut(s) 265, 353
FauNDI CATATG 1 cut(s) 586
Fnu4HI GCNGC 2 cut(s) 402, 578
Fsp4HI GCNGC 2 cut(s) 402, 578
FspBI CTAG 2 cut(s) 158, 441
GluI GCNGC 2 cut(s) 402, 578
HaeIII GGCC 1 cut(s) 115
Hin1II CATG 2 cut(s) 269, 357
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 311
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 58, 307, 550
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 167, 454, 591
HpyCH4III ACNGT 3 cut(s) 89, 149, 469
HpyCH4V TGCA 6 cut(s) 84, 198, 446, 490, 577, 592
HpyF3I CTNAG 2 cut(s) 57, 126
Hsp92II CATG 2 cut(s) 269, 357
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 3 cut(s) 97, 129, 470
Lsp1109I GCAGC 2 cut(s) 413, 589
LweI GCATC 1 cut(s) 526
MaeI CTAG 2 cut(s) 158, 441
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 5 cut(s) 26, 281, 287, 290, 462
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 4 cut(s) 25, 71, 178, 222
MluNI TGGCCA 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 5 cut(s) 301, 369, 425, 466, 567
Mox20I TGGCCA 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 492
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 3 cut(s) 239, 270, 352
Msp20I TGGCCA 1 cut(s) 115
MspCI CTTAAG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 490
NdeI CATATG 1 cut(s) 586
NdeII GATC 1 cut(s) 262
NlaIII CATG 2 cut(s) 269, 357
NmuCI GTSAC 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 492
PagI TCATGA 1 cut(s) 265
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 403, 579
RseI CAYNNNNRTG 3 cut(s) 239, 270, 352
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 402, 578
Sau3AI GATC 1 cut(s) 262
SduI GDGCHC 1 cut(s) 448
SetI ASST 8 cut(s) 34, 45, 83, 96, 517, 523, 570, 618
SfaNI GCATC 1 cut(s) 526
SmiMI CAYNNNNRTG 3 cut(s) 239, 270, 352
SmlI CTYRAG 2 cut(s) 38, 516
SmoI CTYRAG 2 cut(s) 38, 516
Sse9I AATT 4 cut(s) 25, 71, 178, 222
SsiI CCGC 2 cut(s) 51, 429
SspMI CTAG 2 cut(s) 158, 441
TaaI ACNGT 3 cut(s) 89, 149, 469
TaqI TCGA 2 cut(s) 166, 204
TasI AATT 4 cut(s) 25, 71, 178, 222
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 401, 577
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 6 cut(s) 17, 186, 282, 288, 532, 573
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 501
Vha464I CTTAAG 1 cut(s) 38
VneI GTGCAC 1 cut(s) 444
XapI RAATTY 2 cut(s) 25, 178
XspI CTAG 2 cut(s) 158, 441
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.