B3 domain-containing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1536 |
| AccIII | TCCGGA | 1 cut(s) | 1107 |
| AciI | CCGC | 4 cut(s) | 167, 611, 1043, 1534 |
| AclWI | GGATC | 2 cut(s) | 421, 481 |
| AcoI | YGGCCR | 1 cut(s) | 227 |
| AcsI | RAATTY | 3 cut(s) | 93, 127, 968 |
| AcuI | CTGAAG | 4 cut(s) | 396, 459, 519, 776 |
| AfaI | GTAC | 4 cut(s) | 144, 723, 1507, 1581 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1422, 1566 |
| AflII | CTTAAG | 1 cut(s) | 149 |
| AflIII | ACRYGT | 1 cut(s) | 629 |
| AjnI | CCWGG | 2 cut(s) | 848, 1144 |
| Alw21I | GWGCWC | 3 cut(s) | 186, 915, 1559 |
| Alw26I | GTCTC | 3 cut(s) | 892, 1144, 1146 |
| Alw44I | GTGCAC | 1 cut(s) | 1555 |
| AlwI | GGATC | 2 cut(s) | 421, 481 |
| Ama87I | CYCGRG | 1 cut(s) | 353 |
| Aor13HI | TCCGGA | 1 cut(s) | 1107 |
| AoxI | GGCC | 4 cut(s) | 227, 672, 1274, 1412 |
| ApaLI | GTGCAC | 1 cut(s) | 1555 |
| ApeKI | GCWGC | 1 cut(s) | 1124 |
| ApoI | RAATTY | 3 cut(s) | 93, 127, 968 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 631, 1235 |
| AspS9I | GGNCC | 2 cut(s) | 1275, 1413 |
| AsuC2I | CCSGG | 1 cut(s) | 886 |
| AsuHPI | GGTGA | 2 cut(s) | 1481, 1714 |
| AsuII | TTCGAA | 1 cut(s) | 1373 |
| AvaI | CYCGRG | 1 cut(s) | 353 |
| BaeGI | GKGCMC | 1 cut(s) | 1559 |
| BalI | TGGCCA | 1 cut(s) | 229 |
| BanII | GRGCYC | 1 cut(s) | 186 |
| BbsI | GAAGAC | 1 cut(s) | 922 |
| Bbv12I | GWGCWC | 3 cut(s) | 186, 915, 1559 |
| BbvI | GCAGC | 1 cut(s) | 1111 |
| BciT130I | CCWGG | 2 cut(s) | 850, 1146 |
| BcnI | CCSGG | 1 cut(s) | 886 |
| BcoDI | GTCTC | 3 cut(s) | 892, 1144, 1146 |
| BfaI | CTAG | 5 cut(s) | 65, 272, 1191, 1335, 1632 |
| BfmI | CTRYAG | 4 cut(s) | 330, 783, 1113, 1212 |
| BfrI | CTTAAG | 1 cut(s) | 149 |
| BglII | AGATCT | 1 cut(s) | 1709 |
| BisI | GCNGC | 1 cut(s) | 1125 |
| BlsI | GCNGC | 1 cut(s) | 1126 |
| Bme1390I | CCNGG | 3 cut(s) | 850, 886, 1146 |
| BmeT110I | CYCGRG | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 2 cut(s) | 1275, 1413 |
| BmrFI | CCNGG | 3 cut(s) | 850, 886, 1146 |
| BmrI | ACTGGG | 1 cut(s) | 1272 |
| BmsI | GCATC | 6 cut(s) | 182, 391, 451, 511, 636, 744 |
| BmuI | ACTGGG | 1 cut(s) | 1272 |
| BpiI | GAAGAC | 1 cut(s) | 922 |
| BpmI | CTGGAG | 2 cut(s) | 1128, 1560 |
| Bpu10I | CCTNAGC | 1 cut(s) | 348 |
| Bpu14I | TTCGAA | 1 cut(s) | 1373 |
| BpuMI | CCSGG | 1 cut(s) | 886 |
| BsaJI | CCNNGG | 2 cut(s) | 848, 1145 |
| BsaWI | WCCGGW | 1 cut(s) | 1107 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1422, 1566 |
| Bse1I | ACTGG | 4 cut(s) | 140, 1000, 1207, 1278 |
| Bse3DI | GCAATG | 1 cut(s) | 593 |
| BseAI | TCCGGA | 1 cut(s) | 1107 |
| BseBI | CCWGG | 2 cut(s) | 850, 1146 |
| BseDI | CCNNGG | 2 cut(s) | 848, 1145 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1422, 1566 |
| BseMI | GCAATG | 1 cut(s) | 593 |
| BseMII | CTCAG | 2 cut(s) | 199, 653 |
| BseNI | ACTGG | 4 cut(s) | 140, 1000, 1207, 1278 |
| BseSI | GKGCMC | 1 cut(s) | 1559 |
| BseXI | GCAGC | 1 cut(s) | 1111 |
| BshFI | GGCC | 4 cut(s) | 229, 674, 1276, 1414 |
| BsiHKAI | GWGCWC | 3 cut(s) | 186, 915, 1559 |
| BsiHKCI | CYCGRG | 1 cut(s) | 353 |
| BsiSI | CCGG | 2 cut(s) | 885, 1108 |
| BslFI | GGGAC | 1 cut(s) | 1040 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1422, 1566 |
| BsmAI | GTCTC | 3 cut(s) | 892, 1144, 1146 |
| BsmFI | GGGAC | 1 cut(s) | 1040 |
| BsmI | GAATGC | 2 cut(s) | 1237, 1345 |
| BsnI | GGCC | 4 cut(s) | 229, 674, 1276, 1414 |
| BsoBI | CYCGRG | 1 cut(s) | 353 |
| Bsp119I | TTCGAA | 1 cut(s) | 1373 |
| Bsp1286I | GDGCHC | 3 cut(s) | 186, 915, 1559 |
| Bsp13I | TCCGGA | 1 cut(s) | 1107 |
| Bsp143I | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| BspACI | CCGC | 4 cut(s) | 167, 611, 1043, 1534 |
| BspANI | GGCC | 4 cut(s) | 229, 674, 1276, 1414 |
| BspCNI | CTCAG | 2 cut(s) | 198, 654 |
| BspEI | TCCGGA | 1 cut(s) | 1107 |
| BspHI | TCATGA | 1 cut(s) | 13 |
| BspPI | GGATC | 2 cut(s) | 421, 481 |
| BspQI | GCTCTTC | 1 cut(s) | 795 |
| BspT104I | TTCGAA | 1 cut(s) | 1373 |
| BspTI | CTTAAG | 1 cut(s) | 149 |
| BsrBI | CCGCTC | 1 cut(s) | 1536 |
| BsrDI | GCAATG | 1 cut(s) | 593 |
| BsrI | ACTGG | 4 cut(s) | 140, 1000, 1207, 1278 |
| BssECI | CCNNGG | 2 cut(s) | 848, 1145 |
| BssMI | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| Bst2UI | CCWGG | 2 cut(s) | 850, 1146 |
| Bst4CI | ACNGT | 1 cut(s) | 74 |
| Bst6I | CTCTTC | 3 cut(s) | 15, 648, 795 |
| BstAFI | CTTAAG | 1 cut(s) | 149 |
| BstBI | TTCGAA | 1 cut(s) | 1373 |
| BstDEI | CTNAG | 3 cut(s) | 185, 348, 662 |
| BstKTI | GATC | 8 cut(s) | 60, 416, 476, 1071, 1244, 1474, 1522, 1712 |
| BstMAI | GTCTC | 3 cut(s) | 892, 1144, 1146 |
| BstMBI | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1191 |
| BstNI | CCWGG | 2 cut(s) | 850, 1146 |
| BstSCI | CCNGG | 3 cut(s) | 848, 884, 1144 |
| BstSFI | CTRYAG | 4 cut(s) | 330, 783, 1113, 1212 |
| BstSLI | GKGCMC | 1 cut(s) | 1559 |
| BstV1I | GCAGC | 1 cut(s) | 1111 |
| BstV2I | GAAGAC | 1 cut(s) | 922 |
| BstX2I | RGATCY | 3 cut(s) | 413, 473, 1709 |
| BstYI | RGATCY | 3 cut(s) | 413, 473, 1709 |
| BsuRI | GGCC | 4 cut(s) | 229, 674, 1276, 1414 |
| BtsIMutI | CAGTG | 1 cut(s) | 659 |
| CciI | TCATGA | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 2 cut(s) | 1275, 1413 |
| Csp6I | GTAC | 4 cut(s) | 143, 722, 1506, 1580 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 184, 219 |
| CviAII | CATG | 6 cut(s) | 14, 305, 600, 841, 1154, 1666 |
| CviQI | GTAC | 4 cut(s) | 143, 722, 1506, 1580 |
| DdeI | CTNAG | 3 cut(s) | 185, 348, 662 |
| DpnI | GATC | 8 cut(s) | 59, 415, 475, 1070, 1243, 1473, 1521, 1711 |
| DpnII | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| EaeI | YGGCCR | 1 cut(s) | 227 |
| Eam1104I | CTCTTC | 3 cut(s) | 15, 648, 795 |
| EarI | CTCTTC | 3 cut(s) | 15, 648, 795 |
| Ecl136II | GAGCTC | 1 cut(s) | 184 |
| Eco147I | AGGCCT | 1 cut(s) | 674 |
| Eco24I | GRGCYC | 1 cut(s) | 186 |
| Eco53kI | GAGCTC | 1 cut(s) | 184 |
| Eco57I | CTGAAG | 4 cut(s) | 396, 459, 519, 776 |
| Eco88I | CYCGRG | 1 cut(s) | 353 |
| EcoICRI | GAGCTC | 1 cut(s) | 184 |
| EcoRII | CCWGG | 2 cut(s) | 848, 1144 |
| EcoT22I | ATGCAT | 1 cut(s) | 759 |
| EcoT38I | GRGCYC | 1 cut(s) | 186 |
| FaeI | CATG | 6 cut(s) | 17, 308, 603, 844, 1157, 1669 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1347, 1379, 1495, 1527 |
| FaqI | GGGAC | 1 cut(s) | 1040 |
| FatI | CATG | 6 cut(s) | 13, 304, 599, 840, 1153, 1665 |
| Fnu4HI | GCNGC | 1 cut(s) | 1125 |
| FriOI | GRGCYC | 1 cut(s) | 186 |
| Fsp4HI | GCNGC | 1 cut(s) | 1125 |
| FspBI | CTAG | 5 cut(s) | 65, 272, 1191, 1335, 1632 |
| GluI | GCNGC | 1 cut(s) | 1125 |
| GsuI | CTGGAG | 2 cut(s) | 1128, 1560 |
| HaeIII | GGCC | 4 cut(s) | 229, 674, 1276, 1414 |
| HapII | CCGG | 2 cut(s) | 885, 1108 |
| Hin1II | CATG | 6 cut(s) | 17, 308, 603, 844, 1157, 1669 |
| HindIII | AAGCTT | 1 cut(s) | 152 |
| HinfI | GANTC | 9 cut(s) | 371, 533, 656, 996, 1419, 1616, 1628, 1640, 1652 |
| HpaII | CCGG | 2 cut(s) | 885, 1108 |
| HphI | GGTGA | 2 cut(s) | 1481, 1714 |
| Hpy166II | GTNNAC | 3 cut(s) | 820, 1508, 1557 |
| Hpy188III | TCNNGA | 8 cut(s) | 14, 55, 65, 254, 1108, 1220, 1539, 1713 |
| Hpy8I | GTNNAC | 3 cut(s) | 820, 1508, 1557 |
| HpyAV | CCTTC | 8 cut(s) | 281, 834, 944, 1263, 1373, 1404, 1538, 1582 |
| HpyCH4III | ACNGT | 1 cut(s) | 74 |
| HpyCH4IV | ACGT | 2 cut(s) | 631, 1440 |
| HpyCH4V | TGCA | 6 cut(s) | 195, 757, 844, 1127, 1550, 1557 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1191 |
| HpyF3I | CTNAG | 3 cut(s) | 185, 348, 662 |
| HpySE526I | ACGT | 2 cut(s) | 631, 1440 |
| Hsp92II | CATG | 6 cut(s) | 17, 308, 603, 844, 1157, 1669 |
| Kpn2I | TCCGGA | 1 cut(s) | 1107 |
| Kzo9I | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| LguI | GCTCTTC | 1 cut(s) | 795 |
| LmnI | GCTCC | 2 cut(s) | 689, 1570 |
| Lsp1109I | GCAGC | 1 cut(s) | 1111 |
| LweI | GCATC | 6 cut(s) | 182, 391, 451, 511, 636, 744 |
| MaeI | CTAG | 5 cut(s) | 65, 272, 1191, 1335, 1632 |
| MaeII | ACGT | 2 cut(s) | 631, 1440 |
| MaeIII | GTNAC | 5 cut(s) | 657, 665, 1280, 1448, 1634 |
| MalI | GATC | 8 cut(s) | 59, 415, 475, 1070, 1243, 1473, 1521, 1711 |
| MbiI | CCGCTC | 1 cut(s) | 1536 |
| MboI | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| MflI | RGATCY | 3 cut(s) | 413, 473, 1709 |
| MhlI | GDGCHC | 3 cut(s) | 186, 915, 1559 |
| MlsI | TGGCCA | 1 cut(s) | 229 |
| MluCI | AATT | 7 cut(s) | 87, 93, 127, 336, 968, 1033, 1129 |
| MluNI | TGGCCA | 1 cut(s) | 229 |
| MlyI | GAGTC | 1 cut(s) | 665 |
| MmeI | TCCRAC | 4 cut(s) | 47, 321, 1187, 1412 |
| Mox20I | TGGCCA | 1 cut(s) | 229 |
| Mph1103I | ATGCAT | 1 cut(s) | 759 |
| MroI | TCCGGA | 1 cut(s) | 1107 |
| MroXI | GAANNNNTTC | 2 cut(s) | 631, 1235 |
| MscI | TGGCCA | 1 cut(s) | 229 |
| MseI | TTAA | 4 cut(s) | 90, 150, 966, 1341 |
| MslI | CAYNNNNRTG | 2 cut(s) | 598, 1350 |
| Msp20I | TGGCCA | 1 cut(s) | 229 |
| MspCI | CTTAAG | 1 cut(s) | 149 |
| MspI | CCGG | 2 cut(s) | 885, 1108 |
| MspR9I | CCNGG | 3 cut(s) | 850, 886, 1146 |
| Mva1269I | GAATGC | 2 cut(s) | 1237, 1345 |
| MvaI | CCWGG | 2 cut(s) | 850, 1146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1191 |
| NciI | CCSGG | 1 cut(s) | 886 |
| NdeII | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| NlaIII | CATG | 6 cut(s) | 17, 308, 603, 844, 1157, 1669 |
| NmuCI | GTSAC | 2 cut(s) | 657, 1448 |
| NsiI | ATGCAT | 1 cut(s) | 759 |
| NspV | TTCGAA | 1 cut(s) | 1373 |
| PagI | TCATGA | 1 cut(s) | 13 |
| PceI | AGGCCT | 1 cut(s) | 674 |
| PciSI | GCTCTTC | 1 cut(s) | 795 |
| PctI | GAATGC | 2 cut(s) | 1237, 1345 |
| PdmI | GAANNNNTTC | 2 cut(s) | 631, 1235 |
| PfeI | GAWTC | 8 cut(s) | 371, 533, 996, 1419, 1616, 1628, 1640, 1652 |
| PkrI | GCNGC | 1 cut(s) | 1126 |
| PleI | GAGTC | 1 cut(s) | 664 |
| PpsI | GAGTC | 1 cut(s) | 664 |
| Psp124BI | GAGCTC | 1 cut(s) | 186 |
| Psp6I | CCWGG | 2 cut(s) | 848, 1144 |
| PspGI | CCWGG | 2 cut(s) | 848, 1144 |
| PspPI | GGNCC | 2 cut(s) | 1275, 1413 |
| PsuI | RGATCY | 3 cut(s) | 413, 473, 1709 |
| RsaI | GTAC | 4 cut(s) | 144, 723, 1507, 1581 |
| RsaNI | GTAC | 4 cut(s) | 143, 722, 1506, 1580 |
| RseI | CAYNNNNRTG | 2 cut(s) | 598, 1350 |
| SacI | GAGCTC | 1 cut(s) | 186 |
| SapI | GCTCTTC | 1 cut(s) | 795 |
| SaqAI | TTAA | 4 cut(s) | 90, 150, 966, 1341 |
| SatI | GCNGC | 1 cut(s) | 1125 |
| Sau3AI | GATC | 8 cut(s) | 57, 413, 473, 1068, 1241, 1471, 1519, 1709 |
| Sau96I | GGNCC | 2 cut(s) | 1275, 1413 |
| SchI | GAGTC | 1 cut(s) | 665 |
| ScrFI | CCNGG | 3 cut(s) | 850, 886, 1146 |
| SduI | GDGCHC | 3 cut(s) | 186, 915, 1559 |
| SfaNI | GCATC | 6 cut(s) | 182, 391, 451, 511, 636, 744 |
| SfcI | CTRYAG | 4 cut(s) | 330, 783, 1113, 1212 |
| SfuI | TTCGAA | 1 cut(s) | 1373 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 598, 1350 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| Sse9I | AATT | 7 cut(s) | 87, 93, 127, 336, 968, 1033, 1129 |
| SseBI | AGGCCT | 1 cut(s) | 674 |
| SsiI | CCGC | 4 cut(s) | 167, 611, 1043, 1534 |
| SspMI | CTAG | 5 cut(s) | 65, 272, 1191, 1335, 1632 |
| SstI | GAGCTC | 1 cut(s) | 186 |
| StuI | AGGCCT | 1 cut(s) | 674 |
| StyD4I | CCNGG | 3 cut(s) | 848, 884, 1144 |
| TaaI | ACNGT | 1 cut(s) | 74 |
| TaiI | ACGT | 2 cut(s) | 634, 1443 |
| TaqI | TCGA | 8 cut(s) | 635, 994, 1071, 1198, 1268, 1373, 1619, 1643 |
| TasI | AATT | 7 cut(s) | 87, 93, 127, 336, 968, 1033, 1129 |
| TatI | WGTACW | 2 cut(s) | 142, 1505 |
| TfiI | GAWTC | 8 cut(s) | 371, 533, 996, 1419, 1616, 1628, 1640, 1652 |
| Tru1I | TTAA | 4 cut(s) | 90, 150, 966, 1341 |
| Tru9I | TTAA | 4 cut(s) | 90, 150, 966, 1341 |
| TscAI | CASTG | 1 cut(s) | 666 |
| TseFI | GTSAC | 2 cut(s) | 657, 1448 |
| TseI | GCWGC | 1 cut(s) | 1124 |
| Tsp45I | GTSAC | 2 cut(s) | 657, 1448 |
| TspDTI | ATGAA | 7 cut(s) | 128, 300, 546, 713, 993, 1077, 1620 |
| TspRI | CASTG | 1 cut(s) | 666 |
| Vha464I | CTTAAG | 1 cut(s) | 149 |
| VneI | GTGCAC | 1 cut(s) | 1555 |
| XapI | RAATTY | 3 cut(s) | 93, 127, 968 |
| XbaI | TCTAGA | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 2 cut(s) | 631, 1235 |
| XspI | CTAG | 5 cut(s) | 65, 272, 1191, 1335, 1632 |
| Zsp2I | ATGCAT | 1 cut(s) | 759 |