Rmu_co8429551.1_g000001

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8429551.1
OG0000156
Physical Location & Seq
Reverse (-)
523 .. 1422
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8429551.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atggcttcttcgtatctttgccggaaatgtgctgatcacaggccaagatcgtcttccaccactccccggcgttttctcaaggttatttcagacgacacttccagagacagaaagctcgtaagcatctcctctctctctctcgcgctgtacttgttgaagaacaaggggattccaaagaactttttggataaatatggagaagatctatcaaatctagtatactttaagctcccatgtggtccagaatgggaaataggactcacaagctacaataaagaggtttggtttaggaaaggctggccagagttctctaagtttcactctcttgagaaaggctactcgctacttttcgggtatgaaggggattctaggtttcaggtttccatatttgatggaagcaacaacatggagattgactataccacaagaatgctcgaaagtgaagaaggtgatcaagatgatgatatatctcttcagatctcagaggatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

164

Amino Acids

18.94

Weight (kDa)

5.28

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
AluBI AGCT 3 cut(s) 115, 229, 267
AluI AGCT 3 cut(s) 115, 229, 267
Alw26I GTCTC 1 cut(s) 99
AoxI GGCC 2 cut(s) 41, 299
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 461
AvaII GGWCC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 1 cut(s) 386
BclI TGATCA 2 cut(s) 34, 451
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 2 cut(s) 215, 369
BglII AGATCT 2 cut(s) 202, 477
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 45
BpuEI CTTGAG 2 cut(s) 62, 347
BpuMI CCSGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 495
BseRI GAGGAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 43, 301
BsiSI CCGG 2 cut(s) 22, 67
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 2 cut(s) 43, 301
Bsp143I GATC 5 cut(s) 34, 47, 202, 451, 477
BspANI GGCC 2 cut(s) 43, 301
BspCNI CTCAG 1 cut(s) 494
BspFNI CGCG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 5 cut(s) 34, 47, 202, 451, 477
BssNAI GTATAC 1 cut(s) 220
Bst1107I GTATAC 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 312, 481
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 5 cut(s) 37, 50, 205, 454, 480
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 5 cut(s) 34, 47, 202, 451, 477
BstSCI CCNGG 1 cut(s) 65
BstUI CGCG 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 202, 477
BstYI RGATCY 2 cut(s) 202, 477
BstZ17I GTATAC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 43, 301
BtsCI GGATG 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 234, 406
CviJI RGCY 8 cut(s) 5, 43, 115, 229, 267, 297, 301, 336
CviKI_1 RGCY 8 cut(s) 5, 43, 115, 229, 267, 297, 301, 336
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 312, 481
DpnI GATC 5 cut(s) 36, 49, 204, 453, 479
DpnII GATC 5 cut(s) 34, 47, 202, 451, 477
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 458
FaeI CATG 2 cut(s) 237, 409
FaiI YATR 8 cut(s) 195, 220, 235, 357, 386, 407, 420, 467
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 2 cut(s) 233, 405
FbaI TGATCA 2 cut(s) 34, 451
FblI GTMKAC 1 cut(s) 219
FspBI CTAG 2 cut(s) 215, 369
GlaI GCGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 43, 301
HapII CCGG 2 cut(s) 22, 67
HhaI GCGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 237, 409
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 3 cut(s) 169, 258, 365
HpaII CCGG 2 cut(s) 22, 67
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 91, 477, 484
Hpy188III TCNNGA 4 cut(s) 102, 242, 326, 455
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 353, 440
HpyF3I CTNAG 2 cut(s) 312, 481
Hsp92II CATG 2 cut(s) 237, 409
HspAI GCGC 1 cut(s) 143
Ksp22I TGATCA 2 cut(s) 34, 451
Kzo9I GATC 5 cut(s) 34, 47, 202, 451, 477
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 8 cut(s) 25, 35, 80, 115, 255, 283, 315, 362
LweI GCATC 1 cut(s) 132
MaeI CTAG 2 cut(s) 215, 369
MalI GATC 5 cut(s) 36, 49, 204, 453, 479
MboI GATC 5 cut(s) 34, 47, 202, 451, 477
MboII GAAGA 5 cut(s) 45, 169, 212, 455, 464
MflI RGATCY 2 cut(s) 202, 477
MlsI TGGCCA 1 cut(s) 301
MluNI TGGCCA 1 cut(s) 301
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 3 cut(s) 139, 271, 478
Mox20I TGGCCA 1 cut(s) 301
MscI TGGCCA 1 cut(s) 301
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 301
MspI CCGG 2 cut(s) 22, 67
MspR9I CCNGG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 435
MvnI CGCG 1 cut(s) 143
NciI CCSGG 1 cut(s) 67
NdeII GATC 5 cut(s) 34, 47, 202, 451, 477
NlaIII CATG 2 cut(s) 237, 409
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 169, 365
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 2 cut(s) 202, 477
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 5 cut(s) 34, 47, 202, 451, 477
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 67
SetI ASST 8 cut(s) 84, 117, 231, 269, 282, 374, 381, 451
SfaNI GCATC 1 cut(s) 132
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 2 cut(s) 77, 326
SmoI CTYRAG 2 cut(s) 77, 326
SspMI CTAG 2 cut(s) 215, 369
StyD4I CCNGG 1 cut(s) 65
TaqI TCGA 1 cut(s) 435
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 169, 365
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 2 cut(s) 215, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.