Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

17208610 .. 17209911

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATGAAGCAATTGACTGCAACTGAGAAAGCTAATGCCTTCAAGTCTGATAAACCTTCTTTCAGGATTGTCATGCAGCCCTCTTCTATCCATTATAATATAATGTCTTTACCAAATGAATTTTCCAAGAGATATCTTATGAAGCTGCCTGCTGGCATTGCCATCCTTCGAGTTTTGGATGGAAGAACTTGGTCTGTTAAATTCAAGTATGATCATGCAAACTCAAGGGCTCGACTCCTGAAGGGTTGGTCACCTTTTGTGACGGACAATAATTTGAAAGTTGGTGATGCAGGTCATGGCAGAGGAGGAATTGTTCAAGTTGAAAAAACAAGAAGCCTTGTAGTTAAAATTGAACCTGAATGCAACATGGATTGTGAAATTGGTCCTTCTTGCTCTCTTGAAATTGGCAACAAAATGTCGAAAATTAGTGTGCAGGTTACTCAAAGGCCTTCTTCATCTTTGAGGGCTTCAGATGTTAATCTTGAAGCTGCCAACAAGTTTTCCTCTAAGAATCCGTTCTTCAAAGTCACTATCGGGTCAGGCCATTCTGTGGTATTGCCGTTCACAGCATTAACATTTGCTTCAACTTCCCATGTCCCAGTTAAATTTTCTAGCAGTTTCATCAAACAGAAGAAGCAAACAGTGATGCTTCAGGCCAAAGATACATTCTGGCCTGTGAATTTAATTTCTAGTAAGCCGTGTTCAACTTCAATTTGTGGTGGTTGGGCTGCATTTGCAAAGGAAAATTGTTTAAGAGAAGGAGATGTTTGCATATTTGAGCTCATAGAGATGAATGACATTGTACTGAAAGTTCACATATTTAGATATTGCTTAGAAGGGGAAAGTAATGTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

285

Amino Acids

31.66

Weight (kDa)

9.43

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 97	3e-13	B3 DNA binding domain
B3	PF02362	198 - 275	6.3e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
Acc36I	ACCTGC	2 cut(s)	281, 424
AccB7I	CCANNNNNTGG	1 cut(s)	550
AcsI	RAATTY	4 cut(s)	119, 200, 605, 679
AcuI	CTGAAG	3 cut(s)	260, 453, 635
AfaI	GTAC	1 cut(s)	804
AfiI	CCNNNNNNNGG	1 cut(s)	550
AjuI	GAANNNNNNNTTGG	4 cut(s)	106, 138, 650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	32, 145, 488, 781
AluI	AGCT	4 cut(s)	32, 145, 488, 781
Alw21I	GWGCWC	1 cut(s)	783
AoxI	GGCC	4 cut(s)	446, 541, 654, 671
ApeKI	GCWGC	4 cut(s)	76, 145, 488, 728
ApoI	RAATTY	4 cut(s)	119, 200, 605, 679
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	243, 296
AvaII	GGWCC	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	232, 783
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	4 cut(s)	88, 132, 475, 715
BccI	CCATC	2 cut(s)	170, 173
BceAI	ACGGC	2 cut(s)	544, 682
BclI	TGATCA	1 cut(s)	211
BfaI	CTAG	2 cut(s)	612, 690
BfuAI	ACCTGC	2 cut(s)	281, 424
BisI	GCNGC	4 cut(s)	77, 146, 489, 729
BlsI	GCNGC	4 cut(s)	78, 147, 490, 730
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	277, 636
BmuI	ACTGGG	1 cut(s)	593
BpuEI	CTTGAG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	477
BseGI	GGATG	2 cut(s)	162, 184
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	88, 132, 475, 715
BsgI	GTGCAG	1 cut(s)	452
BshFI	GGCC	4 cut(s)	448, 543, 656, 673
BsiHKAI	GWGCWC	1 cut(s)	783
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	448, 543, 656, 673
Bsp1286I	GDGCHC	2 cut(s)	232, 783
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	4 cut(s)	448, 543, 656, 673
BspCNI	CTCAG	1 cut(s)	16
BspMI	ACCTGC	2 cut(s)	281, 424
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	599
BssMI	GATC	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	150, 154
BstDEI	CTNAG	3 cut(s)	24, 507, 832
BstEII	GGTNACC	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	162, 184
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 734
BstPI	GGTNACC	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	88, 132, 475, 715
BsuRI	GGCC	4 cut(s)	448, 543, 656, 673
BtsCI	GGATG	2 cut(s)	162, 184
BtsIMutI	CAGTG	1 cut(s)	648
BveI	ACCTGC	2 cut(s)	281, 424
Cac8I	GCNNGC	2 cut(s)	150, 154
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	803
CviAII	CATG	5 cut(s)	73, 215, 296, 367, 593
CviQI	GTAC	1 cut(s)	803
DdeI	CTNAG	3 cut(s)	24, 507, 832
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	232, 783
Eco32I	GATATC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	3 cut(s)	260, 453, 635
Eco91I	GGTNACC	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	781
EcoO65I	GGTNACC	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	134
EcoT38I	GRGCYC	2 cut(s)	232, 783
FaeI	CATG	5 cut(s)	76, 218, 299, 370, 596
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	5 cut(s)	72, 214, 295, 366, 592
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	77, 146, 489, 729
FokI	GGATG	2 cut(s)	149, 191
FriOI	GRGCYC	2 cut(s)	232, 783
Fsp4HI	GCNGC	4 cut(s)	77, 146, 489, 729
FspBI	CTAG	2 cut(s)	612, 690
GluI	GCNGC	4 cut(s)	77, 146, 489, 729
HaeIII	GGCC	4 cut(s)	448, 543, 656, 673
Hin1II	CATG	5 cut(s)	76, 218, 299, 370, 596
HinfI	GANTC	2 cut(s)	234, 511
HphI	GGTGA	2 cut(s)	243, 296
Hpy166II	GTNNAC	2 cut(s)	564, 814
Hpy188I	TCNGA	2 cut(s)	49, 472
Hpy188III	TCNNGA	4 cut(s)	64, 238, 398, 482
Hpy8I	GTNNAC	2 cut(s)	564, 814
HpyAV	CCTTC	8 cut(s)	49, 66, 176, 235, 396, 459, 752, 830
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4V	TGCA	9 cut(s)	20, 76, 218, 290, 363, 433, 731, 737, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 734
HpyF3I	CTNAG	3 cut(s)	24, 507, 832
Hsp92II	CATG	5 cut(s)	76, 218, 299, 370, 596
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	211
Lsp1109I	GCAGC	4 cut(s)	88, 132, 475, 715
LweI	GCATC	2 cut(s)	277, 636
MaeI	CTAG	2 cut(s)	612, 690
MaeIII	GTNAC	4 cut(s)	249, 259, 436, 526
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	75, 195, 444, 511, 643
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	2 cut(s)	232, 783
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	91, 296, 299, 456, 514
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	7 cut(s)	198, 345, 477, 572, 603, 683, 752
MslI	CAYNNNNRTG	1 cut(s)	788
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	158, 734
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	5 cut(s)	76, 218, 299, 370, 596
NmuCI	GTSAC	3 cut(s)	249, 259, 526
PceI	AGGCCT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	511
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	78, 147, 490, 730
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	783
PspEI	GGTNACC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	383
PsrI	GAACNNNNNNTAC	4 cut(s)	685, 717, 795, 827
RsaI	GTAC	1 cut(s)	804
RsaNI	GTAC	1 cut(s)	803
RseI	CAYNNNNRTG	1 cut(s)	788
SacI	GAGCTC	1 cut(s)	783
SaqAI	TTAA	7 cut(s)	198, 345, 477, 572, 603, 683, 752
SatI	GCNGC	4 cut(s)	77, 146, 489, 729
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	232, 783
SetI	ASST	9 cut(s)	34, 58, 147, 256, 295, 358, 438, 490, 783
SfaNI	GCATC	2 cut(s)	277, 636
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	612, 690
SstI	GAGCTC	1 cut(s)	783
StuI	AGGCCT	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	643
TaqI	TCGA	3 cut(s)	169, 232, 419
TatI	WGTACW	1 cut(s)	802
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	7 cut(s)	198, 345, 477, 572, 603, 683, 752
Tru9I	TTAA	7 cut(s)	198, 345, 477, 572, 603, 683, 752
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	3 cut(s)	249, 259, 526
TseI	GCWGC	4 cut(s)	76, 145, 488, 728
Tsp45I	GTSAC	3 cut(s)	249, 259, 526
TspDTI	ATGAA	6 cut(s)	20, 132, 155, 444, 610, 806
TspGWI	ACGGA	2 cut(s)	278, 504
TspRI	CASTG	1 cut(s)	648
Van91I	CCANNNNNTGG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	4 cut(s)	119, 200, 605, 679
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	2 cut(s)	612, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.