B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 16 - 105 | 4.4e-15 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 17 |
| AclWI | GGATC | 2 cut(s) | 128, 183 |
| AcoI | YGGCCR | 1 cut(s) | 221 |
| AcsI | RAATTY | 3 cut(s) | 90, 101, 286 |
| AflII | CTTAAG | 1 cut(s) | 146 |
| AgsI | TTSAA | 4 cut(s) | 52, 362, 394, 412 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 13, 45 |
| AluBI | AGCT | 3 cut(s) | 151, 261, 368 |
| AluI | AGCT | 3 cut(s) | 151, 261, 368 |
| AlwI | GGATC | 2 cut(s) | 128, 183 |
| AoxI | GGCC | 1 cut(s) | 221 |
| ApoI | RAATTY | 3 cut(s) | 90, 101, 286 |
| BalI | TGGCCA | 1 cut(s) | 223 |
| BciVI | GTATCC | 1 cut(s) | 461 |
| BfmI | CTRYAG | 1 cut(s) | 246 |
| BfrI | CTTAAG | 1 cut(s) | 146 |
| BfuI | GTATCC | 1 cut(s) | 461 |
| BglII | AGATCT | 1 cut(s) | 124 |
| BsaBI | GATNNNNATC | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 1 cut(s) | 324 |
| BsaWI | WCCGGW | 1 cut(s) | 136 |
| Bse1I | ACTGG | 1 cut(s) | 416 |
| Bse8I | GATNNNNATC | 1 cut(s) | 384 |
| BseDI | CCNNGG | 1 cut(s) | 324 |
| BseGI | GGATG | 1 cut(s) | 70 |
| BseJI | GATNNNNATC | 1 cut(s) | 384 |
| BseNI | ACTGG | 1 cut(s) | 416 |
| BseRI | GAGGAG | 1 cut(s) | 30 |
| BshFI | GGCC | 1 cut(s) | 223 |
| BsiSI | CCGG | 1 cut(s) | 137 |
| BsnI | GGCC | 1 cut(s) | 223 |
| Bsp143I | GATC | 4 cut(s) | 54, 124, 133, 188 |
| BspACI | CCGC | 1 cut(s) | 17 |
| BspANI | GGCC | 1 cut(s) | 223 |
| BspPI | GGATC | 2 cut(s) | 128, 183 |
| BspTI | CTTAAG | 1 cut(s) | 146 |
| BsrI | ACTGG | 1 cut(s) | 416 |
| BssECI | CCNNGG | 1 cut(s) | 324 |
| BssMI | GATC | 4 cut(s) | 54, 124, 133, 188 |
| Bst4CI | ACNGT | 1 cut(s) | 449 |
| Bst6I | CTCTTC | 1 cut(s) | 15 |
| BstAFI | CTTAAG | 1 cut(s) | 146 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstDSI | CCRYGG | 1 cut(s) | 324 |
| BstF5I | GGATG | 1 cut(s) | 70 |
| BstKTI | GATC | 4 cut(s) | 57, 127, 136, 191 |
| BstMBI | GATC | 4 cut(s) | 54, 124, 133, 188 |
| BstSFI | CTRYAG | 1 cut(s) | 246 |
| BstX2I | RGATCY | 3 cut(s) | 124, 133, 188 |
| BstYI | RGATCY | 3 cut(s) | 124, 133, 188 |
| BsuI | GTATCC | 1 cut(s) | 461 |
| BsuRI | GGCC | 1 cut(s) | 223 |
| BtgI | CCRYGG | 1 cut(s) | 324 |
| BtsCI | GGATG | 1 cut(s) | 70 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 313, 348 |
| CviAII | CATG | 2 cut(s) | 265, 299 |
| CviJI | RGCY | 5 cut(s) | 5, 151, 223, 261, 368 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 151, 223, 261, 368 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| DpnI | GATC | 4 cut(s) | 56, 126, 135, 190 |
| DpnII | GATC | 4 cut(s) | 54, 124, 133, 188 |
| EaeI | YGGCCR | 1 cut(s) | 221 |
| Eam1104I | CTCTTC | 1 cut(s) | 15 |
| EarI | CTCTTC | 1 cut(s) | 15 |
| Eco32I | GATATC | 1 cut(s) | 382 |
| EcoRI | GAATTC | 1 cut(s) | 286 |
| EcoRV | GATATC | 1 cut(s) | 382 |
| FaeI | CATG | 2 cut(s) | 268, 302 |
| FatI | CATG | 2 cut(s) | 264, 298 |
| FauI | CCCGC | 1 cut(s) | 24 |
| FauNDI | CATATG | 1 cut(s) | 308 |
| FokI | GGATG | 1 cut(s) | 77 |
| HaeIII | GGCC | 1 cut(s) | 223 |
| HapII | CCGG | 1 cut(s) | 137 |
| Hin1II | CATG | 2 cut(s) | 268, 302 |
| HindIII | AAGCTT | 1 cut(s) | 149 |
| HpaII | CCGG | 1 cut(s) | 137 |
| Hpy188I | TCNGA | 3 cut(s) | 96, 133, 166 |
| Hpy188III | TCNNGA | 3 cut(s) | 52, 75, 192 |
| HpyAV | CCTTC | 3 cut(s) | 208, 275, 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 449 |
| HpyCH4V | TGCA | 1 cut(s) | 306 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| Hsp92II | CATG | 2 cut(s) | 268, 302 |
| Kzo9I | GATC | 4 cut(s) | 54, 124, 133, 188 |
| LmnI | GCTCC | 1 cut(s) | 258 |
| LpnPI | CCDG | 4 cut(s) | 150, 205, 237, 429 |
| MalI | GATC | 4 cut(s) | 56, 126, 135, 190 |
| MboI | GATC | 4 cut(s) | 54, 124, 133, 188 |
| MboII | GAAGA | 3 cut(s) | 109, 374, 386 |
| MflI | RGATCY | 3 cut(s) | 124, 133, 188 |
| MlsI | TGGCCA | 1 cut(s) | 223 |
| MluCI | AATT | 4 cut(s) | 90, 101, 179, 286 |
| MluNI | TGGCCA | 1 cut(s) | 223 |
| MnlI | CCTC | 4 cut(s) | 51, 188, 396, 464 |
| Mox20I | TGGCCA | 1 cut(s) | 223 |
| MscI | TGGCCA | 1 cut(s) | 223 |
| MseI | TTAA | 2 cut(s) | 87, 147 |
| MslI | CAYNNNNRTG | 2 cut(s) | 297, 347 |
| Msp20I | TGGCCA | 1 cut(s) | 223 |
| MspCI | CTTAAG | 1 cut(s) | 146 |
| MspI | CCGG | 1 cut(s) | 137 |
| NdeI | CATATG | 1 cut(s) | 308 |
| NdeII | GATC | 4 cut(s) | 54, 124, 133, 188 |
| NlaIII | CATG | 2 cut(s) | 268, 302 |
| PsuI | RGATCY | 3 cut(s) | 124, 133, 188 |
| RseI | CAYNNNNRTG | 2 cut(s) | 297, 347 |
| SaqAI | TTAA | 2 cut(s) | 87, 147 |
| Sau3AI | GATC | 4 cut(s) | 54, 124, 133, 188 |
| SetI | ASST | 4 cut(s) | 153, 199, 263, 370 |
| SfcI | CTRYAG | 1 cut(s) | 246 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 297, 347 |
| SmlI | CTYRAG | 1 cut(s) | 146 |
| SmoI | CTYRAG | 1 cut(s) | 146 |
| Sse9I | AATT | 4 cut(s) | 90, 101, 179, 286 |
| SsiI | CCGC | 1 cut(s) | 17 |
| TaaI | ACNGT | 1 cut(s) | 449 |
| TaqI | TCGA | 2 cut(s) | 76, 274 |
| TasI | AATT | 4 cut(s) | 90, 101, 179, 286 |
| Tru1I | TTAA | 2 cut(s) | 87, 147 |
| Tru9I | TTAA | 2 cut(s) | 87, 147 |
| TspDTI | ATGAA | 4 cut(s) | 125, 253, 294, 387 |
| TspGWI | ACGGA | 1 cut(s) | 341 |
| Vha464I | CTTAAG | 1 cut(s) | 146 |
| XapI | RAATTY | 3 cut(s) | 90, 101, 286 |