FvH4_6g38690
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000156
Physical Location & Seq
Forward (+)
30609171 .. 30610699
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38690.t1

Sequence Viewer

Length: 1056 bp
ATGATTTCTGAAAGTGAAAACACACAACCTTGTGACATGTTCGAGAAGCCAGTCACAAACAAAGAGTTGCATTGTAATAAATTAATAGTGGAAACCCTGGGAAATAAAGGGGAAAATGGTTTTCTGACCAAAAGAGAAGGTGGAAGCTCTTCTGGTTGTCAAAAATTCCTAAAGCAAACATATGAGATACTTGGGAGGATGAAGCCATTGACTGCAACTGAGAAAGATAATGCCTTCAATTCTGTTAATCCTTCTTTTAGGATTGTCATGCATCCTTATTCTATTCGTTATGAATGTGTGTCTTTGCCAAATGAATTTACCAGGAGATATCTTATGAAGCTGCCTGCTGGAATTGTTAAACTTCGAGTTTTGGATGGAAGAACTTGGTCTGTTAAGTTCAAGTATGACCATTTGAACTCAAGAGCTCGACTCCATGGTGGTTGGTCATCTTTTGTTAGGGGAAATAGTTTGAAAGTCGGTGATGTGTGTATCTTTACCCTGATTAACTGTATTGAACTTCTATTTGAAGTTGTCTTTTTCCACACCAAAGACTCTGCAAACTGCCCCTCATCAACAGGCCATGGTAGAGGAGCGTCTGTTCAAGTCGAAGAAAAGAAACACCCCATACTTGAAGTTGAACCAGATTGCAGCTTGGATTGTAAAATTGGCAAGAACAATCTGTCAAAAATTAGTGGGCAGGTTACTCAAATGCCTTCTTCATCTTTGAGGACCTCAAGGGTTAATCTTGAAGCTGCAAGTAAGTTTTCATCAAAGAATCCCTTCTTCAAAGTCATCATGGGGTCAGGCCATACTATGCATATACCAGCTAACTTCTCTAGGAGTTTCATCAAACATGAAAAGCAAACGGCAATCCTTCAGGTCAAAAATAGATCGTGGCACGTGAATTTGAATCCTTATAAGCCAGGTGCAACTTCAATTTGTGGAGGTTGGGCTGCATTTGCAAAGGAAAATTGTTTAAGAGAAGGAGATGTTTGCATATTTGAGCTCATGGAATTGAATGACATTGTACTGAAAGTTCACGTTTTTAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

352

Amino Acids

39.47

Weight (kDa)

9.21

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 88 - 169 6.3e-17 B3 DNA binding domain
B3 PF02362 263 - 350 4.2e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
Acc36I ACCTGC 1 cut(s) 688
AcsI RAATTY 3 cut(s) 164, 314, 904
AcuI CTGAAG 1 cut(s) 860
AcvI CACGTG 1 cut(s) 901
AfaI GTAC 1 cut(s) 1029
AflIII ACRYGT 1 cut(s) 36
AjnI CCWGG 3 cut(s) 96, 320, 922
AloI GAACNNNNNNTCC 2 cut(s) 582, 614
AluBI AGCT 7 cut(s) 147, 340, 425, 651, 752, 827, 1006
AluI AGCT 7 cut(s) 147, 340, 425, 651, 752, 827, 1006
Alw21I GWGCWC 2 cut(s) 427, 1008
AoxI GGCC 2 cut(s) 577, 805
ApeKI GCWGC 4 cut(s) 340, 648, 752, 953
ApoI RAATTY 3 cut(s) 164, 314, 904
AseI ATTAAT 1 cut(s) 83
Asp700I GAANNNNTTC 2 cut(s) 148, 779
AspS9I GGNCC 1 cut(s) 729
AsuHPI GGTGA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 729
BanII GRGCYC 2 cut(s) 427, 1008
BbrPI CACGTG 1 cut(s) 901
Bbv12I GWGCWC 2 cut(s) 427, 1008
BbvI GCAGC 4 cut(s) 327, 660, 739, 940
BccI CCATC 1 cut(s) 368
BceAI ACGGC 1 cut(s) 882
BciT130I CCWGG 3 cut(s) 98, 322, 924
BfaI CTAG 1 cut(s) 837
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 4 cut(s) 341, 649, 753, 954
BlsI GCNGC 4 cut(s) 342, 650, 754, 955
Bme1390I CCNGG 3 cut(s) 98, 322, 924
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 729
BmrFI CCNGG 3 cut(s) 98, 322, 924
BmsI GCATC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 414, 446
BpuEI CTTGAG 2 cut(s) 403, 718
BsaAI YACGTR 1 cut(s) 901
BsaJI CCNNGG 4 cut(s) 96, 97, 433, 580
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 3 cut(s) 98, 322, 924
BseDI CCNNGG 4 cut(s) 96, 97, 433, 580
BseGI GGATG 3 cut(s) 204, 271, 379
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 4 cut(s) 327, 660, 739, 940
BshFI GGCC 2 cut(s) 579, 807
BsiHKAI GWGCWC 2 cut(s) 427, 1008
BsnI GGCC 2 cut(s) 579, 807
Bsp1286I GDGCHC 2 cut(s) 427, 1008
Bsp143I GATC 1 cut(s) 890
Bsp19I CCATGG 2 cut(s) 433, 580
BspANI GGCC 2 cut(s) 579, 807
BspCNI CTCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 688
BspQI GCTCTTC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 96, 97, 433, 580
BssMI GATC 1 cut(s) 890
BssT1I CCWWGG 2 cut(s) 433, 580
Bst2UI CCWGG 3 cut(s) 98, 322, 924
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 901
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 2 cut(s) 433, 580
BstF5I GGATG 3 cut(s) 204, 271, 379
BstKTI GATC 1 cut(s) 893
BstMBI GATC 1 cut(s) 890
BstMWI GCNNNNNNNGC 1 cut(s) 959
BstNI CCWGG 3 cut(s) 98, 322, 924
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 3 cut(s) 96, 320, 922
BstV1I GCAGC 4 cut(s) 327, 660, 739, 940
BsuRI GGCC 2 cut(s) 579, 807
BtgI CCRYGG 2 cut(s) 433, 580
BtsCI GGATG 3 cut(s) 204, 271, 379
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 729
CseI GACGC 1 cut(s) 582
Csp6I GTAC 1 cut(s) 1028
CviAII CATG 7 cut(s) 37, 268, 434, 581, 796, 854, 1009
CviQI GTAC 1 cut(s) 1028
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 892
DpnII GATC 1 cut(s) 890
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Ecl136II GAGCTC 2 cut(s) 425, 1006
Eco130I CCWWGG 2 cut(s) 433, 580
Eco24I GRGCYC 2 cut(s) 427, 1008
Eco32I GATATC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 729
Eco53kI GAGCTC 2 cut(s) 425, 1006
Eco57I CTGAAG 1 cut(s) 860
Eco72I CACGTG 1 cut(s) 901
EcoICRI GAGCTC 2 cut(s) 425, 1006
EcoO109I RGGNCCY 1 cut(s) 729
EcoRII CCWGG 3 cut(s) 96, 320, 922
EcoRV GATATC 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 433, 580
EcoT22I ATGCAT 2 cut(s) 273, 819
EcoT38I GRGCYC 2 cut(s) 427, 1008
ErhI CCWWGG 2 cut(s) 433, 580
FaeI CATG 7 cut(s) 40, 271, 437, 584, 799, 857, 1012
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FatI CATG 7 cut(s) 36, 267, 433, 580, 795, 853, 1008
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 341, 649, 753, 954
FokI GGATG 3 cut(s) 211, 258, 386
FriOI GRGCYC 2 cut(s) 427, 1008
Fsp4HI GCNGC 4 cut(s) 341, 649, 753, 954
FspBI CTAG 1 cut(s) 837
GluI GCNGC 4 cut(s) 341, 649, 753, 954
HaeIII GGCC 2 cut(s) 579, 807
HgaI GACGC 1 cut(s) 582
Hin1II CATG 7 cut(s) 40, 271, 437, 584, 799, 857, 1012
HinfI GANTC 4 cut(s) 429, 551, 775, 910
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 1039
Hpy188I TCNGA 2 cut(s) 10, 126
Hpy188III TCNNGA 3 cut(s) 43, 420, 746
Hpy8I GTNNAC 1 cut(s) 1039
HpyAV CCTTC 7 cut(s) 131, 244, 261, 723, 790, 884, 977
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 900, 1041
HpyF10VI GCNNNNNNNGC 1 cut(s) 959
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 2 cut(s) 900, 1041
Hsp92II CATG 7 cut(s) 40, 271, 437, 584, 799, 857, 1012
Kzo9I GATC 1 cut(s) 890
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 4 cut(s) 327, 660, 739, 940
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 837
MaeII ACGT 2 cut(s) 900, 1041
MaeIII GTNAC 3 cut(s) 32, 52, 700
MalI GATC 1 cut(s) 892
MboI GATC 1 cut(s) 890
MboII GAAGA 5 cut(s) 141, 390, 620, 708, 775
MhlI GDGCHC 2 cut(s) 427, 1008
MlyI GAGTC 2 cut(s) 423, 545
MnlI CCTC 6 cut(s) 189, 577, 581, 720, 742, 938
Mph1103I ATGCAT 2 cut(s) 273, 819
MroXI GAANNNNTTC 2 cut(s) 148, 779
MseI TTAA 7 cut(s) 83, 246, 357, 393, 504, 741, 977
MspR9I CCNGG 3 cut(s) 98, 322, 924
MvaI CCWGG 3 cut(s) 98, 322, 924
MwoI GCNNNNNNNGC 1 cut(s) 959
NcoI CCATGG 2 cut(s) 433, 580
NdeI CATATG 1 cut(s) 181
NdeII GATC 1 cut(s) 890
NlaIII CATG 7 cut(s) 40, 271, 437, 584, 799, 857, 1012
NmuCI GTSAC 2 cut(s) 32, 52
NsiI ATGCAT 2 cut(s) 273, 819
NspI RCATGY 1 cut(s) 40
PasI CCCWGGG 1 cut(s) 97
PciI ACATGT 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 154
PdmI GAANNNNTTC 2 cut(s) 148, 779
PfeI GAWTC 2 cut(s) 775, 910
PkrI GCNGC 4 cut(s) 342, 650, 754, 955
PleI GAGTC 2 cut(s) 423, 545
PmaCI CACGTG 1 cut(s) 901
PmlI CACGTG 1 cut(s) 901
PpsI GAGTC 2 cut(s) 423, 545
Ppu21I YACGTR 1 cut(s) 901
PpuMI RGGWCCY 1 cut(s) 729
PscI ACATGT 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 83
PsiI TTATAA 1 cut(s) 918
Psp124BI GAGCTC 2 cut(s) 427, 1008
Psp5II RGGWCCY 1 cut(s) 729
Psp6I CCWGG 3 cut(s) 96, 320, 922
PspCI CACGTG 1 cut(s) 901
PspGI CCWGG 3 cut(s) 96, 320, 922
PspPI GGNCC 1 cut(s) 729
PspPPI RGGWCCY 1 cut(s) 729
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
RsaI GTAC 1 cut(s) 1029
RsaNI GTAC 1 cut(s) 1028
SacI GAGCTC 2 cut(s) 427, 1008
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 7 cut(s) 83, 246, 357, 393, 504, 741, 977
SatI GCNGC 4 cut(s) 341, 649, 753, 954
Sau3AI GATC 1 cut(s) 890
Sau96I GGNCC 1 cut(s) 729
SchI GAGTC 2 cut(s) 423, 545
ScrFI CCNGG 3 cut(s) 98, 322, 924
SduI GDGCHC 2 cut(s) 427, 1008
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 729
SmlI CTYRAG 2 cut(s) 418, 733
SmoI CTYRAG 2 cut(s) 418, 733
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 2 cut(s) 427, 1008
StyD4I CCNGG 3 cut(s) 96, 320, 922
StyI CCWWGG 2 cut(s) 433, 580
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 903, 1044
TaqI TCGA 4 cut(s) 42, 364, 427, 606
TatI WGTACW 1 cut(s) 1027
TfiI GAWTC 2 cut(s) 775, 910
Tru1I TTAA 7 cut(s) 83, 246, 357, 393, 504, 741, 977
Tru9I TTAA 7 cut(s) 83, 246, 357, 393, 504, 741, 977
TseFI GTSAC 2 cut(s) 32, 52
TseI GCWGC 4 cut(s) 340, 648, 752, 953
Tsp45I GTSAC 2 cut(s) 32, 52
TspDTI ATGAA 8 cut(s) 215, 306, 327, 350, 708, 756, 835, 870
VpaK11BI GGWCC 1 cut(s) 729
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 3 cut(s) 164, 314, 904
XceI RCATGY 1 cut(s) 40
XmnI GAANNNNTTC 2 cut(s) 148, 779
XspI CTAG 1 cut(s) 837
Zsp2I ATGCAT 2 cut(s) 273, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.