Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

14981078 .. 14983776

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTTCTTCGTATCTTCGCCGGAAATGTGATGATCACCGGCCAAGATCGTCTTCCACCACTCCCCGGCGTTTTCTCACGGTTATTTCAGACGACACTTCCAGAGACAGAAAGCTCGGGATTCCAAAGAGCTTTTTGGATAAATATGGAGAAGATCTATCAAATCTAGTATACTTTAAGCTCCCATGTGGTCCAGAATGGGAAATAGGACTCACAAGCTACAATAAAGAGGTTTGGTTTAGGAAAGGCTGGCCAGAGTTCTCTAAGTTTCACTCTCTTGAGAAAGGCTACTCGCTACTTTTCGGGTATGAAGGGGATTCTAGGTTTCAGGTTTCCATATTTGATGGAAGCAACAACATGGAGATTGACTATACCACAAGCATGCTCGAAAGTGAAGAAGGTGATCAAGATGATGATATATCTCTTGAGATCTCAGAGGATGTTCGACGAACTGCTCTGTCTCACAAGCAAAACAGAACAGTTTTGAGTCCTAAAGCAGAAATCAATGTCAATTTTGAGGAGCGTGTGAAGAAAGAGACACATTGGTCAAAATCAGATATGAAAAGGAAACATGATTTTCCAGCGAAAAGAGATGGGGGAGGCACATCAAGCACTCAAAGATGCCGAAAACAGACACCAAGAGTTTTTAGGAGAGCTAAATCTTACAAGCGTTCTTTCAAAGTTCCCATGCATAGCTCTTATATCATTCAAAAAAATTTGTGGCTGCCTAAAACGTTTGTCCAGACACATCTTCTTATGCAGCCTAGTAATGCTATACTTCAAGTTTCGGGTAGAAGGAAAACTTGGCCTGTTAAATTGACATATGAAGAAACAAAAGGAAGAGCCAAATTTCAGTCTGGTTGGACTAACTTTGTGAGAGACAAGAATATAAAAGATGGAGATGTGTGTGAGTTTGTGTTGATTGACAGCAACAGACTTGTATTTGAAGTTAGGATAAATACTGCAAATCGCACCTTATCACCAGGTAACTTGTTTGTTAGCATAGGAATGTTATTTGATCAAGTGCCAAACAGACTTGGTATAAATGCCATCACTTCCATTACCATTGTCAAGGGCCTGCAGACATTGATGATGGTGATGATGAGGATGATGAAGATGAAGATGAAGATGAAGAGGATAGTGATGATGAATCAATTGAAATCTTGGATCATTTTCCACCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

395

Amino Acids

46.08

Weight (kDa)

9.84

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	27 - 116	3.3e-13	B3 DNA binding domain
B3	PF02362	227 - 319	8.6e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	171
AclI	AACGTT	1 cut(s)	734
AclWI	GGATC	1 cut(s)	1175
AcoI	YGGCCR	2 cut(s)	41, 251
AcsI	RAATTY	2 cut(s)	715, 848
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	5 cut(s)	679, 710, 782, 947, 1159
AjnI	CCWGG	1 cut(s)	982
AjuI	GAANNNNNNNTTGG	4 cut(s)	37, 69, 787, 819
AluBI	AGCT	6 cut(s)	115, 132, 181, 219, 656, 696
AluI	AGCT	6 cut(s)	115, 132, 181, 219, 656, 696
Alw26I	GTCTC	4 cut(s)	99, 465, 530, 873
AlwI	GGATC	1 cut(s)	1175
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	4 cut(s)	41, 251, 806, 1075
ApeKI	GCWGC	2 cut(s)	724, 760
ApoI	RAATTY	2 cut(s)	715, 848
AspS9I	GGNCC	2 cut(s)	191, 1075
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	4 cut(s)	29, 413, 972, 1108
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	711, 772
BccI	CCATC	5 cut(s)	338, 587, 890, 1058, 1087
BciT130I	CCWGG	1 cut(s)	984
BclI	TGATCA	3 cut(s)	34, 403, 1018
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	4 cut(s)	99, 465, 530, 873
BfaI	CTAG	3 cut(s)	167, 321, 765
BfmI	CTRYAG	1 cut(s)	1079
BglII	AGATCT	2 cut(s)	154, 429
BisI	GCNGC	2 cut(s)	725, 761
BlsI	GCNGC	2 cut(s)	726, 762
Bme1390I	CCNGG	2 cut(s)	67, 984
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	191, 1075
BmrFI	CCNGG	2 cut(s)	67, 984
BmsI	GCATC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	299, 446
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	984
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	445, 1113
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	2 cut(s)	711, 772
BshFI	GGCC	4 cut(s)	43, 253, 808, 1077
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	22, 40, 67
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	4 cut(s)	99, 465, 530, 873
BsnI	GGCC	4 cut(s)	43, 253, 808, 1077
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
BspANI	GGCC	4 cut(s)	43, 253, 808, 1077
BspCNI	CTCAG	1 cut(s)	446
BspMAI	CTGCAG	1 cut(s)	1083
BspPI	GGATC	1 cut(s)	1175
BspQI	GCTCTTC	1 cut(s)	835
BsrFI	RCCGGY	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
BssNAI	GTATAC	1 cut(s)	172
Bst1107I	GTATAC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	984
Bst4CI	ACNGT	2 cut(s)	82, 481
Bst6I	CTCTTC	2 cut(s)	835, 1127
BstC8I	GCNNGC	3 cut(s)	251, 383, 1079
BstDEI	CTNAG	2 cut(s)	264, 433
BstF5I	GGATG	2 cut(s)	445, 1113
BstKTI	GATC	7 cut(s)	37, 50, 157, 406, 432, 1021, 1170
BstMAI	GTCTC	4 cut(s)	99, 465, 530, 873
BstMBI	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNI	CCWGG	1 cut(s)	984
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	65, 982
BstSFI	CTRYAG	1 cut(s)	1079
BstV1I	GCAGC	2 cut(s)	711, 772
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	154, 429
BstYI	RGATCY	2 cut(s)	154, 429
BstZ17I	GTATAC	1 cut(s)	172
BsuRI	GGCC	4 cut(s)	43, 253, 808, 1077
BtsCI	GGATG	2 cut(s)	445, 1113
Cac8I	GCNNGC	3 cut(s)	251, 383, 1079
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	191, 1075
CsiI	ACCWGGT	1 cut(s)	982
CviAII	CATG	5 cut(s)	186, 358, 382, 572, 688
DdeI	CTNAG	2 cut(s)	264, 433
DpnI	GATC	7 cut(s)	36, 49, 156, 405, 431, 1020, 1169
DpnII	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
DrdI	GACNNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	2 cut(s)	41, 251
Eam1104I	CTCTTC	2 cut(s)	835, 1127
EarI	CTCTTC	2 cut(s)	835, 1127
Eco47I	GGWCC	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	1075
EcoRII	CCWGG	1 cut(s)	982
EcoT22I	ATGCAT	1 cut(s)	693
FaeI	CATG	5 cut(s)	189, 361, 385, 575, 691
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 787, 819
FatI	CATG	5 cut(s)	185, 357, 381, 571, 687
FauNDI	CATATG	1 cut(s)	823
FbaI	TGATCA	3 cut(s)	34, 403, 1018
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	725, 761
FokI	GGATG	2 cut(s)	452, 1120
Fsp4HI	GCNGC	2 cut(s)	725, 761
FspBI	CTAG	3 cut(s)	167, 321, 765
GluI	GCNGC	2 cut(s)	725, 761
HaeIII	GGCC	4 cut(s)	43, 253, 808, 1077
HapII	CCGG	3 cut(s)	22, 40, 67
Hin1II	CATG	5 cut(s)	189, 361, 385, 575, 691
HinfI	GANTC	5 cut(s)	121, 210, 317, 487, 1150
HpaII	CCGG	3 cut(s)	22, 40, 67
HphI	GGTGA	4 cut(s)	29, 413, 972, 1108
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	4 cut(s)	91, 436, 556, 1187
Hpy188III	TCNNGA	7 cut(s)	102, 118, 194, 278, 407, 425, 742
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	3 cut(s)	305, 392, 789
HpyCH4III	ACNGT	2 cut(s)	82, 481
HpyCH4IV	ACGT	1 cut(s)	734
HpyCH4V	TGCA	4 cut(s)	691, 760, 965, 1081
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	2 cut(s)	264, 433
HpySE526I	ACGT	1 cut(s)	734
Hsp92II	CATG	5 cut(s)	189, 361, 385, 575, 691
Ksp22I	TGATCA	3 cut(s)	34, 403, 1018
Kzo9I	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
LguI	GCTCTTC	1 cut(s)	835
LmnI	GCTCC	2 cut(s)	186, 520
Lsp1109I	GCAGC	2 cut(s)	711, 772
LweI	GCATC	1 cut(s)	611
MabI	ACCWGGT	1 cut(s)	982
MaeI	CTAG	3 cut(s)	167, 321, 765
MaeII	ACGT	1 cut(s)	734
MaeIII	GTNAC	1 cut(s)	986
MalI	GATC	7 cut(s)	36, 49, 156, 405, 431, 1020, 1169
MboI	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
MfeI	CAATTG	1 cut(s)	1154
MflI	RGATCY	2 cut(s)	154, 429
MlsI	TGGCCA	1 cut(s)	253
MluCI	AATT	5 cut(s)	511, 715, 815, 848, 1154
MluNI	TGGCCA	1 cut(s)	253
MlyI	GAGTC	2 cut(s)	204, 496
MmeI	TCCRAC	1 cut(s)	842
MnlI	CCTC	6 cut(s)	223, 430, 511, 593, 1098, 1128
Mox20I	TGGCCA	1 cut(s)	253
Mph1103I	ATGCAT	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	253
MseI	TTAA	2 cut(s)	177, 813
MslI	CAYNNNNRTG	2 cut(s)	380, 1007
Msp20I	TGGCCA	1 cut(s)	253
MspI	CCGG	3 cut(s)	22, 40, 67
MspR9I	CCNGG	2 cut(s)	67, 984
MunI	CAATTG	1 cut(s)	1154
MvaI	CCWGG	1 cut(s)	984
MwoI	GCNNNNNNNGC	1 cut(s)	609
NciI	CCSGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
NlaIII	CATG	5 cut(s)	189, 361, 385, 575, 691
NsiI	ATGCAT	1 cut(s)	693
NspI	RCATGY	1 cut(s)	385
PaeI	GCATGC	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	835
PfeI	GAWTC	3 cut(s)	121, 317, 1150
PkrI	GCNGC	2 cut(s)	726, 762
PleI	GAGTC	2 cut(s)	204, 495
PpsI	GAGTC	2 cut(s)	204, 495
Psp1406I	AACGTT	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	982
PspGI	CCWGG	1 cut(s)	982
PspPI	GGNCC	2 cut(s)	191, 1075
PstI	CTGCAG	1 cut(s)	1083
PsuI	RGATCY	2 cut(s)	154, 429
RseI	CAYNNNNRTG	2 cut(s)	380, 1007
SapI	GCTCTTC	1 cut(s)	835
SaqAI	TTAA	2 cut(s)	177, 813
SatI	GCNGC	2 cut(s)	725, 761
Sau3AI	GATC	7 cut(s)	34, 47, 154, 403, 429, 1018, 1167
Sau96I	GGNCC	2 cut(s)	191, 1075
SchI	GAGTC	2 cut(s)	204, 496
ScrFI	CCNGG	2 cut(s)	67, 984
SexAI	ACCWGGT	1 cut(s)	982
SfaNI	GCATC	1 cut(s)	611
SfcI	CTRYAG	1 cut(s)	1079
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	380, 1007
SmlI	CTYRAG	2 cut(s)	278, 425
SmoI	CTYRAG	2 cut(s)	278, 425
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	5 cut(s)	511, 715, 815, 848, 1154
SspMI	CTAG	3 cut(s)	167, 321, 765
StyD4I	CCNGG	2 cut(s)	65, 982
TaaI	ACNGT	2 cut(s)	82, 481
TaiI	ACGT	1 cut(s)	737
TaqI	TCGA	2 cut(s)	387, 445
TasI	AATT	5 cut(s)	511, 715, 815, 848, 1154
TfiI	GAWTC	3 cut(s)	121, 317, 1150
Tru1I	TTAA	2 cut(s)	177, 813
Tru9I	TTAA	2 cut(s)	177, 813
TseI	GCWGC	2 cut(s)	724, 760
TspDTI	ATGAA	8 cut(s)	324, 575, 840, 1127, 1133, 1139, 1145, 1163
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	715, 848
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	3 cut(s)	167, 321, 765
Zsp2I	ATGCAT	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.