Rorug02G0114900

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000156
Physical Location & Seq
Forward (+)
9797443 .. 9798579
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0114900.1

Sequence Viewer

Length: 1137 bp
ATGCAGAGGCCCAAGCTACAATGGTGCGATCTCCCAAAGGAGCTCTGGCAGATGATCGGAAAATTCCTCGAAACCCGCGTCGACGTTCTCCGATTCCGCAGCGTCTGCTCTCTCTGGCGCTCCGCCCTCCCTCCTGATCTAGACCCAATCGACTCTCCTCCTCTCCCCCTCGGATTCCCTCACGCCGGCGAAGAGCCTCCCGCCGCCGTCTCTCAGACCACCGTCTACCGCCTGCAGTCGCTGATCGCCGGCGAAGGTTCCGATGAGTCGCTGCCGTTCTTGGTGAAGTTGGAGGAGGCTAATTGCGGCGAAATGCGTCTGCTTCATCCGATCACGAACTGGCAGCTCAGGTTATCCATCACTCCGACTATAAAAGAATTCAACTTGTTGGATTATAGGGTTGTGGAGTTGGTGAAATTGTATTCTCTGAAATATGCCTACACCAAAATTGATGTTACTTATGTGAACAAAGTGGTGGTTTTGCCTGCTGATCATTTGAGTTTGGGGGAGGATTTTGTGGTGTTTATGATTTATAGAGGAGGGAAATTGGCTGTTATGAGGTATGGGGATGAGAGTTGGATTCGTGTGGACGAAAACAACTCTCATTATGATGATCTCATTGTGTACAAGGGTCAGTGCTATGTTGTTGATAAATGGGGCACCATTTCGTGGATAAGTCAGGCATTGCAGGTGATTCAGTACTCGCCGCCGTTGTGTGGGTTTGGTGCACACAAGCATTTGGTTGAGTGTTGCGGTGGTCTTTGTGTGGTTGACAGGTATCTTGGTAGTGAGCCTCAGAGGAAGTTTAACTACATACATTGTGATGGCGAGGTGGTGGATTTTAAGGTTTATCGGCTGGATGAGGAATGGGCGACGTGGGTCAATGTGACAAACTTGGGGGATCAAGTCATTATTTTGAGCTATGATGGAGCTTTCTCGGTTTCAACCAGAGACTTTCCTGGGGTGAAGGGAAATTGCATTATGTTCACTGAACAAGACTTTGGTCCTTTACCAGCTGTAATTGGAATGCGATCCAGAAGTCGTCACCGTCGTGTGTTTGACTTGCAGGATGGTAGCATGAGCAACATCGGCTATTCTCAGTTGTTCCGGACACCCTCAAATTGGCTCACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

378

Amino Acids

43.19

Weight (kDa)

5.68

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 93 - 342 4.3e-40 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 679
Acc36I ACCTGC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 659
AccB7I CCANNNNNTGG 1 cut(s) 669
AccI GTMKAC 2 cut(s) 81, 225
AccII CGCG 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 1107
AciI CCGC 9 cut(s) 76, 97, 123, 201, 204, 229, 306, 707, 753
AclWI GGATC 2 cut(s) 909, 1026
AcsI RAATTY 2 cut(s) 62, 377
AfaI GTAC 2 cut(s) 626, 701
AfiI CCNNNNNNNGG 4 cut(s) 185, 669, 716, 1122
AgsI TTSAA 2 cut(s) 382, 945
AjiI CACGTC 1 cut(s) 876
AjnI CCWGG 1 cut(s) 958
AjuI GAANNNNNNNTTGG 2 cut(s) 984, 1016
AleI CACNNNNGTG 1 cut(s) 1050
AluBI AGCT 6 cut(s) 16, 43, 346, 921, 932, 1016
AluI AGCT 6 cut(s) 16, 43, 346, 921, 932, 1016
Alw21I GWGCWC 2 cut(s) 45, 730
Alw26I GTCTC 2 cut(s) 214, 945
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 2 cut(s) 909, 1026
AlwNI CAGNNNCTG 2 cut(s) 105, 241
Aor13HI TCCGGA 1 cut(s) 1107
AoxI GGCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 3 cut(s) 99, 271, 343
ApoI RAATTY 2 cut(s) 62, 377
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 9, 1004
AsuHPI GGTGA 5 cut(s) 295, 424, 703, 976, 1037
AvaII GGWCC 1 cut(s) 1004
BaeGI GKGCMC 2 cut(s) 662, 730
BanI GGYRCC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
Bbv12I GWGCWC 2 cut(s) 45, 730
BbvI GCAGC 3 cut(s) 111, 258, 355
BccI CCATC 4 cut(s) 365, 818, 920, 1064
BceAI ACGGC 3 cut(s) 191, 259, 694
BciT130I CCWGG 1 cut(s) 960
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 214, 945
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 6 cut(s) 100, 204, 272, 307, 344, 707
BlsI GCNGC 6 cut(s) 101, 205, 273, 308, 345, 708
BmcAI AGTACT 1 cut(s) 701
Bme1390I CCNGG 1 cut(s) 960
Bme18I GGWCC 1 cut(s) 1004
BmgBI CACGTC 1 cut(s) 876
BmgT120I GGNCC 2 cut(s) 9, 1004
BmiI GGNNCC 2 cut(s) 259, 661
BmrFI CCNGG 1 cut(s) 960
BoxI GACNNNNGTC 3 cut(s) 221, 878, 1002
Bpu10I CCTNAGC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 169, 959
BsaWI WCCGGW 1 cut(s) 1107
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 669, 716, 1122
Bse118I RCCGGY 2 cut(s) 185, 248
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 683
BseAI TCCGGA 1 cut(s) 1107
BseBI CCWGG 1 cut(s) 960
BseDI CCNNGG 2 cut(s) 169, 959
BseGI GGATG 4 cut(s) 325, 574, 865, 1075
BseLI CCNNNNNNNGG 4 cut(s) 185, 669, 716, 1122
BseMI GCAATG 1 cut(s) 683
BseMII CTCAG 4 cut(s) 227, 361, 809, 1112
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 4 cut(s) 147, 150, 308, 552
BseSI GKGCMC 2 cut(s) 662, 730
BseXI GCAGC 3 cut(s) 111, 258, 355
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 659
BsiHKAI GWGCWC 2 cut(s) 45, 730
BsiSI CCGG 3 cut(s) 186, 249, 1108
BslI CCNNNNNNNGG 4 cut(s) 185, 669, 716, 1122
BsmAI GTCTC 2 cut(s) 214, 945
BsmBI CGTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 1032
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 3 cut(s) 45, 662, 730
Bsp13I TCCGGA 1 cut(s) 1107
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
BspACI CCGC 9 cut(s) 76, 97, 123, 201, 204, 229, 306, 707, 753
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 4 cut(s) 226, 360, 808, 1111
BspEI TCCGGA 1 cut(s) 1107
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 259, 661
BspMAI CTGCAG 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 2 cut(s) 909, 1026
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 683
BsrFI RCCGGY 2 cut(s) 185, 248
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 2 cut(s) 185, 248
BssECI CCNNGG 2 cut(s) 169, 959
BssMI GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 2 cut(s) 223, 1049
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 624
BstC8I GCNNGC 4 cut(s) 187, 233, 250, 486
BstDEI CTNAG 4 cut(s) 213, 347, 795, 1098
BstF5I GGATG 4 cut(s) 325, 574, 865, 1075
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 9 cut(s) 31, 57, 139, 246, 333, 493, 616, 904, 1034
BstMAI GTCTC 2 cut(s) 214, 945
BstMBI GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
BstMWI GCNNNNNNNGC 2 cut(s) 105, 1089
BstNI CCWGG 1 cut(s) 960
BstPAI GACNNNNGTC 3 cut(s) 221, 878, 1002
BstSCI CCNGG 1 cut(s) 958
BstSFI CTRYAG 1 cut(s) 233
BstSLI GKGCMC 2 cut(s) 662, 730
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 111, 258, 355
BsuRI GGCC 1 cut(s) 10
BtrI CACGTC 1 cut(s) 876
BtsCI GGATG 4 cut(s) 325, 574, 865, 1075
BtsIMutI CAGTG 2 cut(s) 641, 987
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 4 cut(s) 187, 233, 250, 486
CaiI CAGNNNCTG 2 cut(s) 105, 241
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 2 cut(s) 185, 248
Cfr13I GGNCC 2 cut(s) 9, 1004
CseI GACGC 3 cut(s) 67, 91, 305
Csp6I GTAC 2 cut(s) 625, 700
CviAII CATG 1 cut(s) 1078
CviQI GTAC 2 cut(s) 625, 700
DdeI CTNAG 4 cut(s) 213, 347, 795, 1098
DpnI GATC 9 cut(s) 30, 56, 138, 245, 332, 492, 615, 903, 1033
DpnII GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 1004
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 958
EcoT38I GRGCYC 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 1 cut(s) 1081
FatI CATG 1 cut(s) 1077
FauI CCCGC 2 cut(s) 83, 208
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 2 cut(s) 81, 225
Fnu4HI GCNGC 6 cut(s) 100, 204, 272, 307, 344, 707
FokI GGATG 4 cut(s) 312, 581, 872, 1082
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 6 cut(s) 100, 204, 272, 307, 344, 707
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 119
GluI GCNGC 6 cut(s) 100, 204, 272, 307, 344, 707
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 10
HapII CCGG 3 cut(s) 186, 249, 1108
HgaI GACGC 3 cut(s) 67, 91, 305
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 1081
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 2 cut(s) 82, 772
HindII GTYRAC 2 cut(s) 82, 772
HinfI GANTC 6 cut(s) 93, 152, 174, 266, 580, 694
HpaII CCGG 3 cut(s) 186, 249, 1108
HphI GGTGA 5 cut(s) 295, 424, 703, 976, 1037
Hpy166II GTNNAC 8 cut(s) 82, 226, 466, 589, 625, 728, 772, 987
Hpy188I TCNGA 9 cut(s) 59, 92, 173, 216, 262, 330, 366, 429, 798
Hpy188III TCNNGA 5 cut(s) 134, 140, 334, 1035, 1108
Hpy8I GTNNAC 8 cut(s) 82, 226, 466, 589, 625, 728, 772, 987
Hpy99I CGWCG 4 cut(s) 83, 86, 877, 1053
HpyAV CCTTC 2 cut(s) 248, 961
HpyCH4III ACNGT 2 cut(s) 223, 1049
HpyCH4IV ACGT 2 cut(s) 84, 875
HpyCH4V TGCA 6 cut(s) 4, 235, 688, 728, 978, 1066
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 1089
HpyF3I CTNAG 4 cut(s) 213, 347, 795, 1098
HpySE526I ACGT 2 cut(s) 84, 875
Hsp92II CATG 1 cut(s) 1081
HspAI GCGC 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 1107
KroI GCCGGC 2 cut(s) 185, 248
KroNI GCCGGC 2 cut(s) 187, 250
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 3 cut(s) 40, 125, 929
Lsp1109I GCAGC 3 cut(s) 111, 258, 355
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 84, 875
MaeIII GTNAC 3 cut(s) 454, 886, 1043
MalI GATC 9 cut(s) 30, 56, 138, 245, 332, 492, 615, 903, 1033
MboI GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
MboII GAAGA 1 cut(s) 203
MhlI GDGCHC 3 cut(s) 45, 662, 730
MlyI GAGTC 2 cut(s) 146, 275
MmeI TCCRAC 4 cut(s) 270, 369, 389, 557
MreI CGCCGGCG 2 cut(s) 185, 248
MroI TCCGGA 1 cut(s) 1107
MroNI GCCGGC 2 cut(s) 185, 248
MseI TTAA 2 cut(s) 807, 843
MslI CAYNNNNRTG 3 cut(s) 609, 822, 1050
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 3 cut(s) 186, 249, 1108
MspR9I CCNGG 1 cut(s) 960
Mva1269I GAATGC 1 cut(s) 1032
MvaI CCWGG 1 cut(s) 960
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 105, 1089
NaeI GCCGGC 2 cut(s) 187, 250
NdeII GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
NgoMIV GCCGGC 2 cut(s) 185, 248
NlaIII CATG 1 cut(s) 1081
NlaIV GGNNCC 2 cut(s) 259, 661
NmuCI GTSAC 2 cut(s) 886, 1043
OliI CACNNNNGTG 1 cut(s) 1050
PaqCI CACCTGC 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 1048
PctI GAATGC 1 cut(s) 1032
PdiI GCCGGC 2 cut(s) 187, 250
PfeI GAWTC 4 cut(s) 93, 174, 580, 694
PflMI CCANNNNNTGG 1 cut(s) 669
PkrI GCNGC 6 cut(s) 101, 205, 273, 308, 345, 708
PleI GAGTC 2 cut(s) 146, 274
PpsI GAGTC 2 cut(s) 146, 274
PshAI GACNNNNGTC 3 cut(s) 221, 878, 1002
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 2 cut(s) 259, 661
PspPI GGNCC 2 cut(s) 9, 1004
PstI CTGCAG 1 cut(s) 237
PstNI CAGNNNCTG 2 cut(s) 105, 241
PvuII CAGCTG 1 cut(s) 1016
RsaI GTAC 2 cut(s) 626, 701
RsaNI GTAC 2 cut(s) 625, 700
RseI CAYNNNNRTG 3 cut(s) 609, 822, 1050
SacI GAGCTC 1 cut(s) 45
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 807, 843
SatI GCNGC 6 cut(s) 100, 204, 272, 307, 344, 707
Sau3AI GATC 9 cut(s) 28, 54, 136, 243, 330, 490, 613, 901, 1031
Sau96I GGNCC 2 cut(s) 9, 1004
ScaI AGTACT 1 cut(s) 701
SchI GAGTC 2 cut(s) 146, 275
ScrFI CCNGG 1 cut(s) 960
SduI GDGCHC 3 cut(s) 45, 662, 730
SfcI CTRYAG 1 cut(s) 233
SgrAI CRCCGGYG 2 cut(s) 185, 248
SgrDI CGTCGACG 1 cut(s) 80
SinI GGWCC 1 cut(s) 1004
SmiMI CAYNNNNRTG 3 cut(s) 609, 822, 1050
SsiI CCGC 9 cut(s) 76, 97, 123, 201, 204, 229, 306, 707, 753
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 958
TaaI ACNGT 2 cut(s) 223, 1049
TaiI ACGT 2 cut(s) 87, 878
TaqI TCGA 3 cut(s) 69, 81, 150
TatI WGTACW 2 cut(s) 624, 699
TauI GCSGC 3 cut(s) 206, 309, 709
TfiI GAWTC 4 cut(s) 93, 174, 580, 694
Tru1I TTAA 2 cut(s) 807, 843
Tru9I TTAA 2 cut(s) 807, 843
TscAI CASTG 2 cut(s) 641, 994
TseFI GTSAC 2 cut(s) 886, 1043
TseI GCWGC 3 cut(s) 99, 271, 343
Tsp45I GTSAC 2 cut(s) 886, 1043
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 641, 994
Van91I CCANNNNNTGG 1 cut(s) 669
VneI GTGCAC 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 1004
XapI RAATTY 2 cut(s) 62, 377
XbaI TCTAGA 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XmiI GTMKAC 2 cut(s) 81, 225
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.