Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

13482535 .. 13484735

Gene Structure 2201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGTGGCGTTTGGCCTACGTTTTGTTCCACAACTCCCCATTTTTTCAAGATCATTCTGGAGAATACTTCTAGAGACATCAAACTTAAAATTCCAAAGAAATTTGTGAAGAGATATGGAGAACATCTCTCAAATTCAGTATGTCTTAAGATCCCAAGTGGTTGTGAATGGGAAGTGGGAGTGACGCGAAGCGGCAATAAGGTTTGGTTTGAGAAGGGCTGGCCTGCATTCTCTAAATTTTACTCCCTAGACTACGGTGCCTTCTTACTTTTTGGATATGAAGGCAATTCTAAATTCCAGGTTTGCATATTCGATACTAGTGCCACAGAGATTGCCTATCCCATCCATGTAGAAGAATCTGATAACATTAATTGTGAAGATGACAACTCTGTCGAAGTCCTGGACGATTTCCCACATTCCTGCCCAAAAACAAGGGAGAAATCTCCATTACCATCTCCTAGGCCTCACAAGAGAAGAAGAATAAGTTCAAATAGTAAAGAAAATTTTCAAGGGAAAAATGATATTATCAGAAAAGAATATGGTGGAGGCTTGTCTAGAACTCAAAGTTTTCGGAAAGGAACACATAAGGTTTGTGGGAGGATGCATTCGTCAACAGCTAATGCAAAAACTATAGCTCTTGAAAGAGCTAAAATGAATGTACGAGCCAGTTTTGTCAAGAGTTTTACTACACAAGAGCAACAGCTTGTGAAGCTTCAGGTAGGTGATAAATCTTGGCCTGTGAAGTTGAGTGTCTATGATAAATATTCAACAGCTAAATTTTCTGCTGGATGGCATGCCTTTTCCAACGACAATTGTTTGACTGATGGAGATGTTTGCATATTTGAGCTGATACAAATGAATGACGTCGTGCTGAAAGTTCACATTTTTAGATCCGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

300

Amino Acids

34.15

Weight (kDa)

9.1

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	15 - 106	1e-14	B3 DNA binding domain
B3	PF02362	215 - 298	4.9e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AatII	GACGTC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	257
AccII	CGCG	1 cut(s)	187
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	2 cut(s)	145, 885
AcsI	RAATTY	7 cut(s)	90, 101, 133, 236, 293, 502, 776
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	864
AfaI	GTAC	1 cut(s)	660
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	5 cut(s)	49, 489, 509, 641, 768
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	297, 399
AluBI	AGCT	7 cut(s)	617, 635, 647, 703, 712, 773, 847
AluI	AGCT	7 cut(s)	617, 635, 647, 703, 712, 773, 847
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	145, 885
AoxI	GGCC	4 cut(s)	14, 221, 461, 734
ApoI	RAATTY	7 cut(s)	90, 101, 133, 236, 293, 502, 776
AseI	ATTAAT	1 cut(s)	369
Asp700I	GAANNNNTTC	2 cut(s)	484, 504
AspA2I	CCTAGG	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	734
AvrII	CCTAGG	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	257
BccI	CCATC	4 cut(s)	350, 460, 783, 818
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	2 cut(s)	299, 401
BcoDI	GTCTC	1 cut(s)	69
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	5 cut(s)	72, 248, 318, 459, 555
BfmI	CTRYAG	1 cut(s)	630
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	193
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	299, 401
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	299, 401
BmsI	GCATC	1 cut(s)	591
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	864
BsaJI	CCNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	299, 401
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	3 cut(s)	342, 606, 794
BseNI	ACTGG	1 cut(s)	666
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	4 cut(s)	16, 223, 463, 736
BshNI	GGYRCC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	69
BsmI	GAATGC	2 cut(s)	227, 604
BsnI	GGCC	4 cut(s)	16, 223, 463, 736
Bsp143I	GATC	3 cut(s)	51, 150, 890
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	4 cut(s)	16, 223, 463, 736
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	145, 885
BspT107I	GGYRCC	1 cut(s)	257
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	3 cut(s)	51, 150, 890
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	299, 401
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	864
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	221, 225, 795
BstF5I	GGATG	3 cut(s)	342, 606, 794
BstFNI	CGCG	1 cut(s)	187
BstKTI	GATC	3 cut(s)	54, 153, 893
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	51, 150, 890
BstMWI	GCNNNNNNNGC	1 cut(s)	709
BstNI	CCWGG	2 cut(s)	299, 401
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	2 cut(s)	297, 399
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	150, 890
BstYI	RGATCY	2 cut(s)	150, 890
BsuRI	GGCC	4 cut(s)	16, 223, 463, 736
BtsCI	GGATG	3 cut(s)	342, 606, 794
Cac8I	GCNNGC	3 cut(s)	221, 225, 795
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	659
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	2 cut(s)	347, 794
CviQI	GTAC	1 cut(s)	659
DpnI	GATC	3 cut(s)	53, 152, 892
DpnII	GATC	3 cut(s)	51, 150, 890
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	297, 399
EcoT14I	CCWWGG	1 cut(s)	458
EcoT22I	ATGCAT	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	2 cut(s)	350, 797
FatI	CATG	2 cut(s)	346, 793
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	3 cut(s)	329, 613, 801
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	5 cut(s)	72, 248, 318, 459, 555
GluI	GCNGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	16, 223, 463, 736
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	2 cut(s)	350, 797
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	1 cut(s)	356
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	2 cut(s)	612, 880
Hpy188I	TCNGA	3 cut(s)	361, 530, 573
Hpy188III	TCNNGA	6 cut(s)	49, 59, 72, 555, 638, 676
Hpy8I	GTNNAC	2 cut(s)	612, 880
Hpy99I	CGWCG	1 cut(s)	869
HpyAV	CCTTC	3 cut(s)	208, 271, 275
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	20, 864
HpyCH4V	TGCA	5 cut(s)	227, 306, 604, 623, 837
HpyF10VI	GCNNNNNNNGC	1 cut(s)	709
HpySE526I	ACGT	2 cut(s)	20, 864
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	2 cut(s)	350, 797
Kzo9I	GATC	3 cut(s)	51, 150, 890
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	5 cut(s)	72, 248, 318, 459, 555
MaeII	ACGT	2 cut(s)	20, 864
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	53, 152, 892
MboI	GATC	3 cut(s)	51, 150, 890
MboII	GAAGA	5 cut(s)	121, 365, 389, 486, 489
MfeI	CAATTG	1 cut(s)	811
MflI	RGATCY	2 cut(s)	150, 890
MmeI	TCCRAC	1 cut(s)	828
MnlI	CCTC	3 cut(s)	474, 539, 591
Mph1103I	ATGCAT	1 cut(s)	606
MroXI	GAANNNNTTC	2 cut(s)	484, 504
MseI	TTAA	3 cut(s)	87, 147, 369
MspCI	CTTAAG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	299, 401
MunI	CAATTG	1 cut(s)	811
Mva1269I	GAATGC	2 cut(s)	227, 604
MvaI	CCWGG	2 cut(s)	299, 401
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	709
NdeII	GATC	3 cut(s)	51, 150, 890
NlaIII	CATG	2 cut(s)	350, 797
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	606
NspI	RCATGY	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	797
PceI	AGGCCT	1 cut(s)	463
PctI	GAATGC	2 cut(s)	227, 604
PdmI	GAANNNNTTC	2 cut(s)	484, 504
PfeI	GAWTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	297, 399
PspGI	CCWGG	2 cut(s)	297, 399
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	150, 890
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	87, 147, 369
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	3 cut(s)	51, 150, 890
ScrFI	CCNGG	2 cut(s)	299, 401
SfaNI	GCATC	1 cut(s)	591
SfcI	CTRYAG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	317
SphI	GCATGC	1 cut(s)	797
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	192
SspI	AATATT	1 cut(s)	764
SspMI	CTAG	5 cut(s)	72, 248, 318, 459, 555
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	2 cut(s)	297, 399
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	23, 867
TaqI	TCGA	2 cut(s)	312, 393
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	3 cut(s)	87, 147, 369
Tru9I	TTAA	3 cut(s)	87, 147, 369
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	294, 668, 872
TspGWI	ACGGA	1 cut(s)	883
Vha464I	CTTAAG	1 cut(s)	146
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	7 cut(s)	90, 101, 133, 236, 293, 502, 776
XbaI	TCTAGA	2 cut(s)	71, 554
XceI	RCATGY	1 cut(s)	797
XmaJI	CCTAGG	1 cut(s)	458
XmnI	GAANNNNTTC	2 cut(s)	484, 504
XspI	CTAG	5 cut(s)	72, 248, 318, 459, 555
ZraI	GACGTC	1 cut(s)	865
Zsp2I	ATGCAT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.