RLG00000020614
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000156
Physical Location & Seq
Forward (+)
66723193 .. 66724490
1298 bp
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UTR
Exon/CDS
Intron
RLM00000020614

Sequence Viewer

Length: 474 bp
ATGGCTTCTCTTCGCCCACTGAGATTTTGTTCTATCACTCCCCATTTTTTCAAGATCATTCTGGAGGACACTTCTCAACACAAACTTAAAATTCCGAAGAAATTTGTGATGAAATATGGTAAAGATTTGTCAAATTCAGTATTTCTTAAGCTCCCAAGTGGTTCTGAATGGGAAGTGGAATTAACAAGGGTTGGTTTGAGGAGCAACTGTTCAAGTCCGAGAAATGAAACGCCCCCTAGCAAGAACAAAATGTCAAATATTAGTGGGCAGGTTACTCAAAGGCCTTCTTCATCTTTGAGGACAGCAAGGGTTAATCTTGAAGCTGCAAGCAAGTTTTCATCAAAGAATCCCTTCTTCAAAGTCACCCTGGGTTCAGGCCATACTGTGCATGTACCAGTTAACTTTGCTAGGAGTTTCATCAAACGGGACAAGCAAACAGTGATGCTTCGGTCAAAGATAGATCGTGGCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

158

Amino Acids

17.72

Weight (kDa)

10.74

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AcsI RAATTY 3 cut(s) 90, 101, 133
AfaI GTAC 1 cut(s) 393
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 4 cut(s) 52, 213, 320, 358
AjnI CCWGG 1 cut(s) 366
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 2 cut(s) 151, 323
AluI AGCT 2 cut(s) 151, 323
AoxI GGCC 3 cut(s) 281, 376, 466
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 3 cut(s) 90, 101, 133
Asp700I GAANNNNTTC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 355
BbvI GCAGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 368
BfaI CTAG 2 cut(s) 237, 408
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 366, 367
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 366, 367
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 3 cut(s) 283, 378, 468
BslFI GGGAC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 3 cut(s) 283, 378, 468
Bsp143I GATC 2 cut(s) 54, 460
BspANI GGCC 3 cut(s) 283, 378, 468
BspCNI CTCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 366, 367
BssMI GATC 2 cut(s) 54, 460
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 209, 385, 439
Bst6I CTCTTC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 20
BstKTI GATC 2 cut(s) 57, 463
BstMBI GATC 2 cut(s) 54, 460
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 310
BsuRI GGCC 3 cut(s) 283, 378, 468
BtsIMutI CAGTG 2 cut(s) 17, 444
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 392
CviAII CATG 1 cut(s) 389
CviJI RGCY 6 cut(s) 5, 151, 283, 323, 378, 468
CviKI_1 RGCY 6 cut(s) 5, 151, 283, 323, 378, 468
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 56, 462
DpnII GATC 2 cut(s) 54, 460
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco147I AGGCCT 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 392
FaiI YATR 3 cut(s) 117, 381, 390
FalI AAGNNNNNCTT 4 cut(s) 271, 303, 335, 367
FaqI GGGAC 1 cut(s) 440
FatI CATG 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 237, 408
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 3 cut(s) 283, 378, 468
Hin1II CATG 1 cut(s) 392
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 1 cut(s) 346
HpaI GTTAAC 1 cut(s) 400
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 3 cut(s) 96, 166, 219
Hpy188III TCNNGA 3 cut(s) 52, 62, 317
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 2 cut(s) 294, 361
HpyCH4III ACNGT 3 cut(s) 209, 385, 439
HpyCH4V TGCA 2 cut(s) 326, 388
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 2 cut(s) 54, 460
LmnI GCTCC 2 cut(s) 156, 201
LpnPI CCDG 6 cut(s) 47, 254, 353, 360, 380, 408
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 432
MaeI CTAG 2 cut(s) 237, 408
MaeIII GTNAC 2 cut(s) 271, 361
MalI GATC 2 cut(s) 56, 462
MboI GATC 2 cut(s) 54, 460
MboII GAAGA 3 cut(s) 109, 279, 346
MluCI AATT 4 cut(s) 90, 101, 133, 179
MnlI CCTC 3 cut(s) 58, 192, 291
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 5 cut(s) 87, 147, 182, 312, 399
MspCI CTTAAG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
NdeII GATC 2 cut(s) 54, 460
NlaIII CATG 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 1 cut(s) 392
PasI CCCWGGG 1 cut(s) 367
PceI AGGCCT 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SaqAI TTAA 5 cut(s) 87, 147, 182, 312, 399
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 54, 460
ScrFI CCNGG 1 cut(s) 368
SetI ASST 3 cut(s) 153, 273, 325
SfaNI GCATC 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 90, 101, 133, 179
SseBI AGGCCT 1 cut(s) 283
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 237, 408
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 209, 385, 439
TaqII GACCGA 1 cut(s) 438
TasI AATT 4 cut(s) 90, 101, 133, 179
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 5 cut(s) 87, 147, 182, 312, 399
Tru9I TTAA 5 cut(s) 87, 147, 182, 312, 399
TscAI CASTG 2 cut(s) 24, 444
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 5 cut(s) 125, 240, 279, 327, 406
TspRI CASTG 2 cut(s) 24, 444
Vha464I CTTAAG 1 cut(s) 146
XapI RAATTY 3 cut(s) 90, 101, 133
XceI RCATGY 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 2 cut(s) 237, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.