B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 169 - 250 | 2.7e-16 | B3 DNA binding domain |
| B3 | PF02362 | 301 - 377 | 9.1e-15 | B3 DNA binding domain |
| B3 | PF02362 | 410 - 463 | 4.3e-07 | B3 DNA binding domain |
| B3 | PF02362 | 465 - 543 | 1.9e-11 | B3 DNA binding domain |
| B3 | PF02362 | 682 - 774 | 5.8e-16 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1291 |
| AccBSI | CCGCTC | 1 cut(s) | 252 |
| AccI | GTMKAC | 1 cut(s) | 261 |
| AciI | CCGC | 5 cut(s) | 252, 778, 1251, 2053, 2317 |
| AclI | AACGTT | 1 cut(s) | 1952 |
| AcoI | YGGCCR | 1 cut(s) | 1535 |
| AcsI | RAATTY | 8 cut(s) | 52, 638, 917, 1415, 1447, 1600, 1804, 2174 |
| AcuI | CTGAAG | 3 cut(s) | 768, 1170, 2307 |
| AfaI | GTAC | 2 cut(s) | 2560, 2591 |
| AfeI | AGCGCT | 1 cut(s) | 1990 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 670 |
| AflIII | ACRYGT | 1 cut(s) | 1967 |
| AjiI | CACGTC | 1 cut(s) | 265 |
| AjnI | CCWGG | 4 cut(s) | 391, 669, 1578, 1974 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1185, 1217 |
| Alw21I | GWGCWC | 1 cut(s) | 1383 |
| Alw26I | GTCTC | 1 cut(s) | 1746 |
| Aor51HI | AGCGCT | 1 cut(s) | 1990 |
| AoxI | GGCC | 3 cut(s) | 1180, 1535, 2054 |
| ApeKI | GCWGC | 6 cut(s) | 517, 583, 1328, 1986, 2119, 2515 |
| ApoI | RAATTY | 8 cut(s) | 52, 638, 917, 1415, 1447, 1600, 1804, 2174 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 314, 346 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 853, 2389 |
| AspLEI | GCGC | 2 cut(s) | 1167, 1991 |
| AspS9I | GGNCC | 1 cut(s) | 2055 |
| AsuHPI | GGTGA | 3 cut(s) | 1041, 1094, 1964 |
| BalI | TGGCCA | 1 cut(s) | 1537 |
| BanII | GRGCYC | 2 cut(s) | 1030, 1383 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 948, 980 |
| BauI | CACGAG | 1 cut(s) | 1938 |
| BbsI | GAAGAC | 1 cut(s) | 574 |
| Bbv12I | GWGCWC | 1 cut(s) | 1383 |
| BbvI | GCAGC | 6 cut(s) | 529, 595, 1315, 1998, 2131, 2527 |
| BccI | CCATC | 9 cut(s) | 374, 559, 611, 839, 971, 1910, 2147, 2372, 2536 |
| BceAI | ACGGC | 1 cut(s) | 944 |
| BciT130I | CCWGG | 4 cut(s) | 393, 671, 1580, 1976 |
| BciVI | GTATCC | 1 cut(s) | 2056 |
| BclI | TGATCA | 1 cut(s) | 1009 |
| BcoDI | GTCTC | 1 cut(s) | 1746 |
| BfaI | CTAG | 8 cut(s) | 14, 183, 458, 858, 1229, 1562, 1994, 2394 |
| BfmI | CTRYAG | 2 cut(s) | 515, 1158 |
| BfoI | RGCGCY | 2 cut(s) | 1168, 1992 |
| BfuAI | ACCTGC | 1 cut(s) | 1291 |
| BfuI | GTATCC | 1 cut(s) | 2056 |
| BglII | AGATCT | 1 cut(s) | 1438 |
| BisI | GCNGC | 9 cut(s) | 253, 518, 584, 1252, 1329, 1987, 2054, 2120, 2516 |
| BlsI | GCNGC | 9 cut(s) | 254, 519, 585, 1253, 1330, 1988, 2055, 2121, 2517 |
| Bme1390I | CCNGG | 4 cut(s) | 393, 671, 1580, 1976 |
| BmgBI | CACGTC | 1 cut(s) | 265 |
| BmgT120I | GGNCC | 1 cut(s) | 2055 |
| BmiI | GGNNCC | 1 cut(s) | 419 |
| BmrFI | CCNGG | 4 cut(s) | 393, 671, 1580, 1976 |
| BmsI | GCATC | 1 cut(s) | 1493 |
| BpiI | GAAGAC | 1 cut(s) | 574 |
| BpmI | CTGGAG | 2 cut(s) | 414, 1950 |
| BpuEI | CTTGAG | 3 cut(s) | 849, 1006, 1862 |
| BsaJI | CCNNGG | 6 cut(s) | 90, 391, 522, 670, 1183, 2058 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1185, 1215 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 670 |
| Bse1I | ACTGG | 1 cut(s) | 1933 |
| Bse3DI | GCAATG | 1 cut(s) | 334 |
| BseBI | CCWGG | 4 cut(s) | 393, 671, 1580, 1976 |
| BseDI | CCNNGG | 6 cut(s) | 90, 391, 522, 670, 1183, 2058 |
| BseGI | GGATG | 4 cut(s) | 622, 982, 2158, 2445 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 670 |
| BseMI | GCAATG | 1 cut(s) | 334 |
| BseMII | CTCAG | 1 cut(s) | 2454 |
| BseNI | ACTGG | 1 cut(s) | 1933 |
| BseRI | GAGGAG | 1 cut(s) | 1206 |
| BseXI | GCAGC | 6 cut(s) | 529, 595, 1315, 1998, 2131, 2527 |
| BseYI | CCCAGC | 1 cut(s) | 1718 |
| BsgI | GTGCAG | 2 cut(s) | 1096, 1858 |
| BshFI | GGCC | 3 cut(s) | 1182, 1537, 2056 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1383 |
| BslFI | GGGAC | 2 cut(s) | 374, 1076 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 670 |
| BsmAI | GTCTC | 1 cut(s) | 1746 |
| BsmFI | GGGAC | 2 cut(s) | 374, 1076 |
| BsnI | GGCC | 3 cut(s) | 1182, 1537, 2056 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1030, 1383 |
| Bsp1407I | TGTACA | 1 cut(s) | 2558 |
| Bsp143I | GATC | 2 cut(s) | 1009, 1438 |
| Bsp19I | CCATGG | 1 cut(s) | 1183 |
| BspACI | CCGC | 5 cut(s) | 252, 778, 1251, 2053, 2317 |
| BspANI | GGCC | 3 cut(s) | 1182, 1537, 2056 |
| BspCNI | CTCAG | 1 cut(s) | 2455 |
| BspHI | TCATGA | 2 cut(s) | 1035, 2425 |
| BspLI | GGNNCC | 1 cut(s) | 419 |
| BspMAI | CTGCAG | 2 cut(s) | 519, 1162 |
| BspMI | ACCTGC | 1 cut(s) | 1291 |
| BspQI | GCTCTTC | 4 cut(s) | 468, 859, 2004, 2395 |
| BsrBI | CCGCTC | 1 cut(s) | 252 |
| BsrDI | GCAATG | 1 cut(s) | 334 |
| BsrGI | TGTACA | 1 cut(s) | 2558 |
| BsrI | ACTGG | 1 cut(s) | 1933 |
| BssECI | CCNNGG | 6 cut(s) | 90, 391, 522, 670, 1183, 2058 |
| BssMI | GATC | 2 cut(s) | 1009, 1438 |
| BssSI | CACGAG | 1 cut(s) | 1938 |
| BssT1I | CCWWGG | 1 cut(s) | 1183 |
| Bst2BI | CACGAG | 1 cut(s) | 1938 |
| Bst2UI | CCWGG | 4 cut(s) | 393, 671, 1580, 1976 |
| Bst4CI | ACNGT | 3 cut(s) | 20, 455, 1201 |
| Bst6I | CTCTTC | 6 cut(s) | 468, 859, 1146, 2004, 2395, 2527 |
| BstAUI | TGTACA | 1 cut(s) | 2558 |
| BstC8I | GCNNGC | 2 cut(s) | 588, 952 |
| BstDEI | CTNAG | 2 cut(s) | 605, 2463 |
| BstDSI | CCRYGG | 2 cut(s) | 90, 1183 |
| BstEII | GGTNACC | 1 cut(s) | 1047 |
| BstF5I | GGATG | 4 cut(s) | 622, 982, 2158, 2445 |
| BstH2I | RGCGCY | 2 cut(s) | 1168, 1992 |
| BstHHI | GCGC | 2 cut(s) | 1167, 1991 |
| BstKTI | GATC | 2 cut(s) | 1012, 1441 |
| BstMAI | GTCTC | 1 cut(s) | 1746 |
| BstMBI | GATC | 2 cut(s) | 1009, 1438 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 405, 956, 1334, 1846, 1941, 2575 |
| BstNI | CCWGG | 4 cut(s) | 393, 671, 1580, 1976 |
| BstNSI | RCATGY | 3 cut(s) | 219, 1840, 1971 |
| BstPI | GGTNACC | 1 cut(s) | 1047 |
| BstSCI | CCNGG | 4 cut(s) | 391, 669, 1578, 1974 |
| BstSFI | CTRYAG | 2 cut(s) | 515, 1158 |
| BstV1I | GCAGC | 6 cut(s) | 529, 595, 1315, 1998, 2131, 2527 |
| BstV2I | GAAGAC | 1 cut(s) | 574 |
| BstX2I | RGATCY | 1 cut(s) | 1438 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1982 |
| BstYI | RGATCY | 1 cut(s) | 1438 |
| BsuI | GTATCC | 1 cut(s) | 2056 |
| BsuRI | GGCC | 3 cut(s) | 1182, 1537, 2056 |
| BtgI | CCRYGG | 2 cut(s) | 90, 1183 |
| BtgZI | GCGATG | 2 cut(s) | 732, 2271 |
| BtrI | CACGTC | 1 cut(s) | 265 |
| BtsCI | GGATG | 4 cut(s) | 622, 982, 2158, 2445 |
| BtsI | GCAGTG | 1 cut(s) | 1870 |
| BtsIMutI | CAGTG | 5 cut(s) | 1100, 1113, 1146, 1870, 1926 |
| BveI | ACCTGC | 1 cut(s) | 1291 |
| Cac8I | GCNNGC | 2 cut(s) | 588, 952 |
| CciI | TCATGA | 2 cut(s) | 1035, 2425 |
| CfoI | GCGC | 2 cut(s) | 1167, 1991 |
| Cfr13I | GGNCC | 1 cut(s) | 2055 |
| CsiI | ACCWGGT | 1 cut(s) | 1974 |
| Csp6I | GTAC | 2 cut(s) | 2559, 2590 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 79, 114, 1627, 1662 |
| CviQI | GTAC | 2 cut(s) | 2559, 2590 |
| DdeI | CTNAG | 2 cut(s) | 605, 2463 |
| DpnI | GATC | 2 cut(s) | 1011, 1440 |
| DpnII | GATC | 2 cut(s) | 1009, 1438 |
| EaeI | YGGCCR | 1 cut(s) | 1535 |
| Eam1104I | CTCTTC | 6 cut(s) | 468, 859, 1146, 2004, 2395, 2527 |
| EarI | CTCTTC | 6 cut(s) | 468, 859, 1146, 2004, 2395, 2527 |
| Ecl136II | GAGCTC | 1 cut(s) | 1381 |
| Eco130I | CCWWGG | 1 cut(s) | 1183 |
| Eco24I | GRGCYC | 2 cut(s) | 1030, 1383 |
| Eco47III | AGCGCT | 1 cut(s) | 1990 |
| Eco53kI | GAGCTC | 1 cut(s) | 1381 |
| Eco57I | CTGAAG | 3 cut(s) | 768, 1170, 2307 |
| Eco91I | GGTNACC | 1 cut(s) | 1047 |
| EcoICRI | GAGCTC | 1 cut(s) | 1381 |
| EcoO65I | GGTNACC | 1 cut(s) | 1047 |
| EcoRI | GAATTC | 4 cut(s) | 52, 638, 1600, 2174 |
| EcoRII | CCWGG | 4 cut(s) | 391, 669, 1578, 1974 |
| EcoT14I | CCWWGG | 1 cut(s) | 1183 |
| EcoT38I | GRGCYC | 2 cut(s) | 1030, 1383 |
| ErhI | CCWWGG | 1 cut(s) | 1183 |
| FaqI | GGGAC | 2 cut(s) | 374, 1076 |
| FbaI | TGATCA | 1 cut(s) | 1009 |
| FblI | GTMKAC | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 9 cut(s) | 253, 518, 584, 1252, 1329, 1987, 2054, 2120, 2516 |
| FokI | GGATG | 4 cut(s) | 629, 989, 2165, 2452 |
| FriOI | GRGCYC | 2 cut(s) | 1030, 1383 |
| Fsp4HI | GCNGC | 9 cut(s) | 253, 518, 584, 1252, 1329, 1987, 2054, 2120, 2516 |
| FspBI | CTAG | 8 cut(s) | 14, 183, 458, 858, 1229, 1562, 1994, 2394 |
| GlaI | GCGC | 2 cut(s) | 1166, 1990 |
| GluI | GCNGC | 9 cut(s) | 253, 518, 584, 1252, 1329, 1987, 2054, 2120, 2516 |
| GsaI | CCCAGC | 1 cut(s) | 1722 |
| GsuI | CTGGAG | 2 cut(s) | 414, 1950 |
| HaeII | RGCGCY | 2 cut(s) | 1168, 1992 |
| HaeIII | GGCC | 3 cut(s) | 1182, 1537, 2056 |
| HhaI | GCGC | 2 cut(s) | 1167, 1991 |
| Hin6I | GCGC | 2 cut(s) | 1165, 1989 |
| HinP1I | GCGC | 2 cut(s) | 1165, 1989 |
| HincII | GTYRAC | 4 cut(s) | 684, 997, 1176, 2223 |
| HindII | GTYRAC | 4 cut(s) | 684, 997, 1176, 2223 |
| HindIII | AAGCTT | 2 cut(s) | 752, 1463 |
| HinfI | GANTC | 9 cut(s) | 329, 387, 1032, 1154, 1241, 1865, 1923, 2205, 2406 |
| HpaI | GTTAAC | 1 cut(s) | 997 |
| HphI | GGTGA | 3 cut(s) | 1041, 1094, 1964 |
| Hpy166II | GTNNAC | 7 cut(s) | 262, 684, 997, 1176, 1559, 2223, 2590 |
| Hpy188III | TCNNGA | 7 cut(s) | 14, 362, 564, 736, 1036, 2275, 2426 |
| Hpy8I | GTNNAC | 7 cut(s) | 262, 684, 997, 1176, 1559, 2223, 2590 |
| HpyCH4III | ACNGT | 3 cut(s) | 20, 455, 1201 |
| HpyCH4IV | ACGT | 3 cut(s) | 264, 1952, 2225 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 405, 956, 1334, 1846, 1941, 2575 |
| HpyF3I | CTNAG | 2 cut(s) | 605, 2463 |
| HpySE526I | ACGT | 3 cut(s) | 264, 1952, 2225 |
| HspAI | GCGC | 2 cut(s) | 1165, 1989 |
| Ksp22I | TGATCA | 1 cut(s) | 1009 |
| KspAI | GTTAAC | 1 cut(s) | 997 |
| Kzo9I | GATC | 2 cut(s) | 1009, 1438 |
| LguI | GCTCTTC | 4 cut(s) | 468, 859, 2004, 2395 |
| LmnI | GCTCC | 2 cut(s) | 24, 1193 |
| Lsp1109I | GCAGC | 6 cut(s) | 529, 595, 1315, 1998, 2131, 2527 |
| LweI | GCATC | 1 cut(s) | 1493 |
| MabI | ACCWGGT | 1 cut(s) | 1974 |
| MaeI | CTAG | 8 cut(s) | 14, 183, 458, 858, 1229, 1562, 1994, 2394 |
| MaeII | ACGT | 3 cut(s) | 264, 1952, 2225 |
| MalI | GATC | 2 cut(s) | 1011, 1440 |
| MbiI | CCGCTC | 1 cut(s) | 252 |
| MboI | GATC | 2 cut(s) | 1009, 1438 |
| MfeI | CAATTG | 1 cut(s) | 2450 |
| MflI | RGATCY | 1 cut(s) | 1438 |
| MhlI | GDGCHC | 2 cut(s) | 1030, 1383 |
| MlsI | TGGCCA | 1 cut(s) | 1537 |
| MluNI | TGGCCA | 1 cut(s) | 1537 |
| MlyI | GAGTC | 5 cut(s) | 338, 396, 1026, 1163, 1932 |
| MmeI | TCCRAC | 1 cut(s) | 2390 |
| Mox20I | TGGCCA | 1 cut(s) | 1537 |
| MroXI | GAANNNNTTC | 2 cut(s) | 853, 2389 |
| MscI | TGGCCA | 1 cut(s) | 1537 |
| MslI | CAYNNNNRTG | 6 cut(s) | 63, 113, 214, 1388, 1611, 1750 |
| Msp20I | TGGCCA | 1 cut(s) | 1537 |
| MspR9I | CCNGG | 4 cut(s) | 393, 671, 1580, 1976 |
| MunI | CAATTG | 1 cut(s) | 2450 |
| MvaI | CCWGG | 4 cut(s) | 393, 671, 1580, 1976 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 405, 956, 1334, 1846, 1941, 2575 |
| NcoI | CCATGG | 1 cut(s) | 1183 |
| NdeII | GATC | 2 cut(s) | 1009, 1438 |
| NlaIV | GGNNCC | 1 cut(s) | 419 |
| NmuCI | GTSAC | 7 cut(s) | 296, 330, 1047, 1832, 1924, 1970, 2571 |
| NspI | RCATGY | 3 cut(s) | 219, 1840, 1971 |
| PagI | TCATGA | 2 cut(s) | 1035, 2425 |
| PciI | ACATGT | 1 cut(s) | 1967 |
| PciSI | GCTCTTC | 4 cut(s) | 468, 859, 2004, 2395 |
| PdmI | GAANNNNTTC | 2 cut(s) | 853, 2389 |
| PfeI | GAWTC | 4 cut(s) | 1241, 1865, 2205, 2406 |
| PkrI | GCNGC | 9 cut(s) | 254, 519, 585, 1253, 1330, 1988, 2055, 2121, 2517 |
| PleI | GAGTC | 5 cut(s) | 337, 395, 1026, 1162, 1931 |
| PpsI | GAGTC | 5 cut(s) | 337, 395, 1026, 1162, 1931 |
| PscI | ACATGT | 1 cut(s) | 1967 |
| Psp124BI | GAGCTC | 1 cut(s) | 1383 |
| Psp1406I | AACGTT | 1 cut(s) | 1952 |
| Psp6I | CCWGG | 4 cut(s) | 391, 669, 1578, 1974 |
| PspEI | GGTNACC | 1 cut(s) | 1047 |
| PspFI | CCCAGC | 1 cut(s) | 1718 |
| PspGI | CCWGG | 4 cut(s) | 391, 669, 1578, 1974 |
| PspN4I | GGNNCC | 1 cut(s) | 419 |
| PspPI | GGNCC | 1 cut(s) | 2055 |
| PstI | CTGCAG | 2 cut(s) | 519, 1162 |
| PsuI | RGATCY | 1 cut(s) | 1438 |
| RsaI | GTAC | 2 cut(s) | 2560, 2591 |
| RsaNI | GTAC | 2 cut(s) | 2559, 2590 |
| RseI | CAYNNNNRTG | 6 cut(s) | 63, 113, 214, 1388, 1611, 1750 |
| SacI | GAGCTC | 1 cut(s) | 1383 |
| SapI | GCTCTTC | 4 cut(s) | 468, 859, 2004, 2395 |
| SatI | GCNGC | 9 cut(s) | 253, 518, 584, 1252, 1329, 1987, 2054, 2120, 2516 |
| Sau3AI | GATC | 2 cut(s) | 1009, 1438 |
| Sau96I | GGNCC | 1 cut(s) | 2055 |
| SchI | GAGTC | 5 cut(s) | 338, 396, 1026, 1163, 1932 |
| ScrFI | CCNGG | 4 cut(s) | 393, 671, 1580, 1976 |
| SduI | GDGCHC | 2 cut(s) | 1030, 1383 |
| SexAI | ACCWGGT | 1 cut(s) | 1974 |
| SfaNI | GCATC | 1 cut(s) | 1493 |
| SfcI | CTRYAG | 2 cut(s) | 515, 1158 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 63, 113, 214, 1388, 1611, 1750 |
| SmlI | CTYRAG | 3 cut(s) | 864, 1021, 1841 |
| SmoI | CTYRAG | 3 cut(s) | 864, 1021, 1841 |
| SsiI | CCGC | 5 cut(s) | 252, 778, 1251, 2053, 2317 |
| SspI | AATATT | 1 cut(s) | 1291 |
| SspMI | CTAG | 8 cut(s) | 14, 183, 458, 858, 1229, 1562, 1994, 2394 |
| SstI | GAGCTC | 1 cut(s) | 1383 |
| StyD4I | CCNGG | 4 cut(s) | 391, 669, 1578, 1974 |
| StyI | CCWWGG | 1 cut(s) | 1183 |
| TaaI | ACNGT | 3 cut(s) | 20, 455, 1201 |
| TaiI | ACGT | 3 cut(s) | 267, 1955, 2228 |
| TaqI | TCGA | 5 cut(s) | 40, 63, 1030, 1588, 2203 |
| TatI | WGTACW | 2 cut(s) | 2558, 2589 |
| TauI | GCSGC | 3 cut(s) | 255, 1254, 2056 |
| TfiI | GAWTC | 4 cut(s) | 1241, 1865, 2205, 2406 |
| TscAI | CASTG | 5 cut(s) | 1107, 1120, 1153, 1877, 1933 |
| TseFI | GTSAC | 7 cut(s) | 296, 330, 1047, 1832, 1924, 1970, 2571 |
| TseI | GCWGC | 6 cut(s) | 517, 583, 1328, 1986, 2119, 2515 |
| Tsp45I | GTSAC | 7 cut(s) | 296, 330, 1047, 1832, 1924, 1970, 2571 |
| TspGWI | ACGGA | 1 cut(s) | 107 |
| TspRI | CASTG | 5 cut(s) | 1107, 1120, 1153, 1877, 1933 |
| XapI | RAATTY | 8 cut(s) | 52, 638, 917, 1415, 1447, 1600, 1804, 2174 |
| XbaI | TCTAGA | 1 cut(s) | 13 |
| XceI | RCATGY | 3 cut(s) | 219, 1840, 1971 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 671 |
| XmiI | GTMKAC | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 2 cut(s) | 853, 2389 |
| XspI | CTAG | 8 cut(s) | 14, 183, 458, 858, 1229, 1562, 1994, 2394 |