Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

61455207 .. 61457818

Gene Structure 2612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCATTCGTCAACAGCTAATGCAAAAACTATAGCTCTTGAAAGAGCTAATGGTTTCAAATCCGAAAACCCTTTTTCAGTAGTCACCATTCATCCGTCATATCTCCATTATAATACTTTGAATGTACGAGCCAGTTTTGTCAAGAGTTTTGCTACACAAGAGCAACAGCTTGTGAAGATTCAGGTGGGTGATAAATCTTGGCCTGTGAAGTTGAATATCTATGATAAATATTCAACAGCTAAATTTTCTGCTGGATGGCATGCATTTTCCAACGACAATTGTTTGACTGATGGAGATGTTTGCATATTTGAGCTGATACAAATGAATGACGTTGTGCTGAAAGTTCACATTTTTAGATCCGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

122

Amino Acids

13.79

Weight (kDa)

7.82

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	25 - 120	4.6e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	5 cut(s)	41, 58, 121, 214, 234
AluBI	AGCT	6 cut(s)	17, 35, 47, 169, 239, 313
AluI	AGCT	6 cut(s)	17, 35, 47, 169, 239, 313
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	76, 200
BccI	CCATC	2 cut(s)	249, 284
BfmI	CTRYAG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	91, 260
BseNI	ACTGG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	91, 260
BstKTI	GATC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	91, 260
Cac8I	GCNNGC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	8 cut(s)	17, 35, 47, 131, 169, 202, 239, 313
CviKI_1	RGCY	8 cut(s)	17, 35, 47, 131, 169, 202, 239, 313
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
EcoT22I	ATGCAT	2 cut(s)	6, 265
FaeI	CATG	1 cut(s)	263
FaiI	YATR	6 cut(s)	32, 100, 111, 222, 261, 305
FatI	CATG	1 cut(s)	259
FokI	GGATG	2 cut(s)	78, 267
HaeIII	GGCC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	2 cut(s)	76, 200
Hpy166II	GTNNAC	2 cut(s)	12, 346
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	38, 142
Hpy8I	GTNNAC	2 cut(s)	12, 346
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	4, 23, 263, 303
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	356
LpnPI	CCDG	4 cut(s)	145, 167, 216, 237
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	1 cut(s)	187
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	2 cut(s)	242, 277
MmeI	TCCRAC	1 cut(s)	294
Mph1103I	ATGCAT	2 cut(s)	6, 265
MunI	CAATTG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	4
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	2 cut(s)	6, 265
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	356
SetI	ASST	8 cut(s)	19, 37, 49, 171, 186, 241, 315, 333
SfcI	CTRYAG	1 cut(s)	30
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	2 cut(s)	242, 277
SspI	AATATT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	333
TasI	AATT	2 cut(s)	242, 277
TfiI	GAWTC	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	80, 338
TspGWI	ACGGA	2 cut(s)	84, 349
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	263
Zsp2I	ATGCAT	2 cut(s)	6, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.