FvH4_5g10851
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000212
Physical Location & Seq
Reverse (-)
6132844 .. 6133470
627 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10851.t1

Sequence Viewer

Length: 627 bp
ATGGAAGAGATTAATATAATTTCCTCATGTTCTCCACCTTATAGCATTTGTCAAGAAACCTCTGCAAACACACTTCAACAACGCCTCCAGTTGATAGTTCAAAATCGGCCGGAGCTTTGGGTCTACTCTATTTTCTGGCAAGCCTCCAAGGACCGCAACGGCGTCCTTTCGTTGTCATGGGCCGGTGGCCATTCCAGAGGCACCAGAGACTTCTCATCCAAGAAGTTGGATAACTATTACCAGCCCAAATTCGGGTTGGAACTGCAGACGCCGAAGAAGGGGATCAACCGACAAGTCCAAGCTTTGTTCCAGGAAGACATGGACATGGACATCAATGGAGATGTGACTGATTCCGAGTGGTTCTACTTCTACTCCCTCTCTTTGACACAGTCCTTTGCTGCGGGCCATGGGAATAACAATATAGTTGGGCGTACATTTTGTTCCGGTGCTTTTGTATGGTTGGCAGGAGATCACGAGTTTCAGTTGTATGAGTGTGAGAGAGTTAAAGAGGCCCGCATGTATGGAATTCAAACACTTGTTTGTATTCCTACGCCCGATGGGGTAATTGAACTCGCCTCTTTGGAAGTGACAAGGAAGATTGGCTTTTTGTGCAGAACTCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

209

Amino Acids

23.68

Weight (kDa)

5.42

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 25 - 196 4e-37 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 123
AciI CCGC 3 cut(s) 154, 401, 514
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 2 cut(s) 107, 187
AcsI RAATTY 2 cut(s) 248, 525
AcyI GRCGYC 2 cut(s) 162, 269
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 3 cut(s) 251, 252, 278
AgsI TTSAA 4 cut(s) 77, 101, 530, 569
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 115, 302
AluI AGCT 2 cut(s) 115, 302
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 290
AoxI GGCC 5 cut(s) 107, 180, 187, 403, 510
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 2 cut(s) 248, 525
AseI ATTAAT 1 cut(s) 12
AspS9I GGNCC 4 cut(s) 151, 180, 403, 511
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 189
BanI GGYRCC 1 cut(s) 200
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 551
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 151, 180, 403, 511
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 71
BsaHI GRCGYC 2 cut(s) 162, 269
BsaJI CCNNGG 2 cut(s) 147, 406
BsaWI WCCGGW 1 cut(s) 443
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 356, 386
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 252, 278
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 147, 406
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 3 cut(s) 251, 252, 278
BseNI ACTGG 1 cut(s) 88
BseX3I CGGCCG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 5 cut(s) 109, 182, 189, 405, 512
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 110
BsiSI CCGG 3 cut(s) 110, 183, 444
BslI CCNNNNNNNGG 3 cut(s) 251, 252, 278
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 5 cut(s) 109, 182, 189, 405, 512
Bsp143I GATC 2 cut(s) 282, 469
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 3 cut(s) 154, 401, 514
BspANI GGCC 5 cut(s) 109, 182, 189, 405, 512
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 147, 406
BssMI GATC 2 cut(s) 282, 469
BssNI GRCGYC 2 cut(s) 162, 269
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 2 cut(s) 147, 406
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 390
BstACI GRCGYC 2 cut(s) 162, 269
BstC8I GCNNGC 3 cut(s) 141, 403, 514
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 2 cut(s) 285, 472
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 282, 469
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 107
BsuRI GGCC 5 cut(s) 109, 182, 189, 405, 512
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 215
Cac8I GCNNGC 3 cut(s) 141, 403, 514
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 4 cut(s) 151, 180, 403, 511
CseI GACGC 2 cut(s) 151, 277
Csp6I GTAC 1 cut(s) 432
CviAII CATG 6 cut(s) 27, 177, 319, 325, 407, 517
CviQI GTAC 1 cut(s) 432
DpnI GATC 2 cut(s) 284, 471
DpnII GATC 2 cut(s) 282, 469
EaeI YGGCCR 2 cut(s) 107, 187
EagI CGGCCG 1 cut(s) 107
EclXI CGGCCG 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 147, 406
Eco47I GGWCC 1 cut(s) 151
Eco52I CGGCCG 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 147, 406
ErhI CCWWGG 2 cut(s) 147, 406
FaeI CATG 6 cut(s) 30, 180, 322, 328, 410, 520
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FatI CATG 6 cut(s) 26, 176, 318, 324, 406, 516
FauI CCCGC 2 cut(s) 394, 521
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 5 cut(s) 109, 182, 189, 405, 512
HapII CCGG 3 cut(s) 110, 183, 444
HgaI GACGC 2 cut(s) 151, 277
Hin1I GRCGYC 2 cut(s) 162, 269
Hin1II CATG 6 cut(s) 30, 180, 322, 328, 410, 520
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 1 cut(s) 350
HpaII CCGG 3 cut(s) 110, 183, 444
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 3 cut(s) 53, 195, 473
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4V TGCA 3 cut(s) 65, 265, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
Hsp92I GRCGYC 2 cut(s) 162, 269
Hsp92II CATG 6 cut(s) 30, 180, 322, 328, 410, 520
Kzo9I GATC 2 cut(s) 282, 469
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 343, 586
MalI GATC 2 cut(s) 284, 471
MboI GATC 2 cut(s) 282, 469
MboII GAAGA 4 cut(s) 17, 286, 326, 607
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 4 cut(s) 18, 248, 525, 564
MluNI TGGCCA 1 cut(s) 189
MmeI TCCRAC 2 cut(s) 207, 237
MnlI CCTC 8 cut(s) 34, 70, 95, 154, 191, 386, 502, 586
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 2 cut(s) 12, 504
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 3 cut(s) 110, 183, 444
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 609
NcoI CCATGG 1 cut(s) 406
NdeII GATC 2 cut(s) 282, 469
NlaIII CATG 6 cut(s) 30, 180, 322, 328, 410, 520
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 343, 586
NspI RCATGY 1 cut(s) 520
PfeI GAWTC 1 cut(s) 350
PflFI GACNNNGTC 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 1 cut(s) 400
PshBI ATTAAT 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 4 cut(s) 151, 180, 403, 511
PsrI GAACNNNNNNTAC 2 cut(s) 424, 456
PstI CTGCAG 1 cut(s) 267
PsyI GACNNNGTC 1 cut(s) 388
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 12, 504
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 282, 469
Sau96I GGNCC 4 cut(s) 151, 180, 403, 511
ScrFI CCNGG 1 cut(s) 311
SetI ASST 4 cut(s) 40, 62, 117, 304
SfcI CTRYAG 1 cut(s) 263
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 4 cut(s) 18, 248, 525, 564
SsiI CCGC 3 cut(s) 154, 401, 514
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 147, 406
TaaI ACNGT 1 cut(s) 390
TasI AATT 4 cut(s) 18, 248, 525, 564
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 12, 504
Tru9I TTAA 2 cut(s) 12, 504
TseFI GTSAC 2 cut(s) 343, 586
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 2 cut(s) 343, 586
Tth111I GACNNNGTC 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 2 cut(s) 248, 525
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.