Rmu_sc0001850.1_g000027
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001850.1
OG0000212
Physical Location & Seq
Reverse (-)
117867 .. 118397
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001850.1_g000027.1.cds

Sequence Viewer

Length: 531 bp
ctgcaaggacttaagctccgggacctcaatctggctgagcggagaccacgagcttcagttcaacaactcgagagagccaaagaggcccaaatccacgggatcgagaccttgatctgcatcccaacttccgacggtgttcttgaaatgggttcctccggtttgatcagagagaactggggcttgatccagcaagccaagtcgttgtttgggtcagatcagcccgactcggaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgatgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacccggacttcgcagtttccgactgccagatgaaaagagtgccgaagaaaaggggccggaaacccgggctgggccgagacgcgccactcaaccacgtggaggcggagcggcaggagaagctcacctcgcaagggcggcgttggaagtga

Protein Analysis

176

Amino Acids

19.77

Weight (kDa)

9.33

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 40, 241, 490
AccII CGCG 1 cut(s) 464
AciI CCGC 5 cut(s) 40, 239, 485, 490, 517
AclWI GGATC 3 cut(s) 107, 178, 315
AcuI CTGAAG 1 cut(s) 39
AcvI CACGTG 1 cut(s) 478
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 5 cut(s) 31, 385, 452, 481, 513
AflII CTTAAG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 2 cut(s) 62, 143
AluBI AGCT 5 cut(s) 16, 53, 315, 371, 502
AluI AGCT 5 cut(s) 16, 53, 315, 371, 502
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 3 cut(s) 37, 98, 453
AlwI GGATC 3 cut(s) 107, 178, 315
Ama87I CYCGRG 3 cut(s) 68, 242, 446
AoxI GGCC 3 cut(s) 84, 436, 454
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 4 cut(s) 22, 85, 436, 454
AsuC2I CCSGG 4 cut(s) 20, 386, 447, 448
AsuHPI GGTGA 1 cut(s) 496
AvaI CYCGRG 3 cut(s) 68, 242, 446
AvaII GGWCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 373
BauI CACGAG 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 373
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 4 cut(s) 20, 386, 447, 448
BcoDI GTCTC 3 cut(s) 37, 98, 453
BfaI CTAG 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 2 cut(s) 491, 518
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 2 cut(s) 492, 519
Bme1390I CCNGG 4 cut(s) 20, 386, 447, 448
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 3 cut(s) 68, 242, 446
BmgT120I GGNCC 4 cut(s) 22, 85, 436, 454
BmiI GGNNCC 3 cut(s) 23, 151, 437
BmrFI CCNGG 4 cut(s) 20, 386, 447, 448
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 2 cut(s) 126, 291
BmuI ACTGGG 1 cut(s) 184
Bpu1102I GCTNAGC 1 cut(s) 36
BpuMI CCSGG 4 cut(s) 20, 386, 447, 448
BsaAI YACGTR 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 116
BsaI GGTCTC 2 cut(s) 37, 98
BsaJI CCNNGG 2 cut(s) 94, 446
BsaWI WCCGGW 2 cut(s) 155, 255
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 385, 452, 481, 513
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 94, 446
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 5 cut(s) 31, 385, 452, 481, 513
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 179
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 3 cut(s) 86, 438, 456
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 3 cut(s) 68, 242, 446
BsiSI CCGG 7 cut(s) 19, 156, 256, 291, 386, 439, 447
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 5 cut(s) 31, 385, 452, 481, 513
BsmAI GTCTC 3 cut(s) 37, 98, 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 3 cut(s) 86, 438, 456
Bso31I GGTCTC 2 cut(s) 37, 98
BsoBI CYCGRG 3 cut(s) 68, 242, 446
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 6 cut(s) 99, 111, 162, 183, 214, 307
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 5 cut(s) 40, 239, 485, 490, 517
BspANI GGCC 3 cut(s) 86, 438, 456
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 3 cut(s) 23, 151, 437
BspPI GGATC 3 cut(s) 107, 178, 315
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 2 cut(s) 37, 98
BsrBI CCGCTC 3 cut(s) 40, 241, 490
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 94, 446
BssMI GATC 6 cut(s) 99, 111, 162, 183, 214, 307
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 297
BstAFI CTTAAG 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 3 cut(s) 192, 292, 296
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 464
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 6 cut(s) 102, 114, 165, 186, 217, 310
BstMAI GTCTC 3 cut(s) 37, 98, 453
BstMBI GATC 6 cut(s) 99, 111, 162, 183, 214, 307
BstMWI GCNNNNNNNGC 4 cut(s) 83, 499, 508, 517
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 4 cut(s) 18, 384, 445, 446
BstUI CGCG 1 cut(s) 464
BsuRI GGCC 3 cut(s) 86, 438, 456
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 117
Cac8I GCNNGC 3 cut(s) 192, 292, 296
CfoI GCGC 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 4 cut(s) 22, 85, 436, 454
Cfr9I CCCGGG 1 cut(s) 446
CseI GACGC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 338
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 36
DpnI GATC 6 cut(s) 101, 113, 164, 185, 216, 309
DpnII GATC 6 cut(s) 99, 111, 162, 183, 214, 307
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 500
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 373
Eco31I GGTCTC 2 cut(s) 37, 98
Eco47I GGWCC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 478
Eco88I CYCGRG 3 cut(s) 68, 242, 446
EcoICRI GAGCTC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 1 cut(s) 341
FaiI YATR 1 cut(s) 339
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 491, 518
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 491, 518
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 465
GluI GCNGC 2 cut(s) 491, 518
GsaI CCCAGC 1 cut(s) 455
HaeIII GGCC 3 cut(s) 86, 438, 456
HapII CCGG 7 cut(s) 19, 156, 256, 291, 386, 439, 447
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 466
Hin1II CATG 1 cut(s) 341
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 1 cut(s) 224
HpaII CCGG 7 cut(s) 19, 156, 256, 291, 386, 439, 447
HphI GGTGA 1 cut(s) 496
Hpy188I TCNGA 6 cut(s) 130, 167, 214, 229, 375, 403
Hpy188III TCNNGA 3 cut(s) 70, 103, 140
Hpy99I CGWCG 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 4, 117, 298
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 499, 508, 517
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 1 cut(s) 341
HspAI GCGC 1 cut(s) 464
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 6 cut(s) 99, 111, 162, 183, 214, 307
LmnI GCTCC 4 cut(s) 21, 368, 376, 487
LweI GCATC 2 cut(s) 126, 291
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 477
MalI GATC 6 cut(s) 101, 113, 164, 185, 216, 309
MbiI CCGCTC 3 cut(s) 40, 241, 490
MboI GATC 6 cut(s) 99, 111, 162, 183, 214, 307
MboII GAAGA 4 cut(s) 314, 370, 373, 439
MhlI GDGCHC 1 cut(s) 373
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 3 cut(s) 153, 426, 503
MnlI CCTC 6 cut(s) 35, 76, 163, 298, 475, 517
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 7 cut(s) 19, 156, 256, 291, 386, 439, 447
MspR9I CCNGG 4 cut(s) 20, 386, 447, 448
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 4 cut(s) 83, 499, 508, 517
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 4 cut(s) 20, 386, 447, 448
NdeII GATC 6 cut(s) 99, 111, 162, 183, 214, 307
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 3 cut(s) 23, 151, 437
NmeAIII GCCGAG 1 cut(s) 482
NspI RCATGY 1 cut(s) 341
PaeR7I CTCGAG 2 cut(s) 68, 242
PciI ACATGT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 2 cut(s) 492, 519
PleI GAGTC 1 cut(s) 218
PmaCI CACGTG 1 cut(s) 478
PmlI CACGTG 1 cut(s) 478
PpsI GAGTC 1 cut(s) 218
Ppu21I YACGTR 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 22
PscI ACATGT 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 22
PspCI CACGTG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 451
PspN4I GGNNCC 3 cut(s) 23, 151, 437
PspPI GGNCC 4 cut(s) 22, 85, 436, 454
PspPPI RGGWCCY 1 cut(s) 22
PspXI VCTCGAGB 1 cut(s) 242
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 491, 518
Sau3AI GATC 6 cut(s) 99, 111, 162, 183, 214, 307
Sau96I GGNCC 4 cut(s) 22, 85, 436, 454
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 4 cut(s) 20, 386, 447, 448
SduI GDGCHC 1 cut(s) 373
SetI ASST 9 cut(s) 18, 27, 55, 110, 317, 373, 480, 504, 509
SfaNI GCATC 2 cut(s) 126, 291
Sfr274I CTCGAG 2 cut(s) 68, 242
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 2 cut(s) 68, 242
SmaI CCCGGG 1 cut(s) 448
SmlI CTYRAG 3 cut(s) 11, 68, 242
SmoI CTYRAG 3 cut(s) 11, 68, 242
SsiI CCGC 5 cut(s) 40, 239, 485, 490, 517
SspMI CTAG 1 cut(s) 351
SstI GAGCTC 1 cut(s) 373
StyD4I CCNGG 4 cut(s) 18, 384, 445, 446
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 480
TaqI TCGA 3 cut(s) 69, 102, 243
TauI GCSGC 2 cut(s) 493, 520
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TspDTI ATGAA 2 cut(s) 238, 428
TspGWI ACGGA 1 cut(s) 381
TspMI CCCGGG 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 22
XceI RCATGY 1 cut(s) 341
XhoI CTCGAG 2 cut(s) 68, 242
XmaI CCCGGG 1 cut(s) 446
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.