Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001687.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

86309 .. 88526

Gene Structure 2218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001687.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggagaaagaaattcttgacagtgctgtgttagagcgaagagcgaggagagtggatgccccaaagggatttgggtgtccaaatcaatttcaagtatcgatggtgtcggcgcgtgaggggtcgccagatgacatggatactgtgtcggatcagccccacccggaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcataattgccaacgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacccggacttcgcagattgccagatgaaaagagcgccgaagaaatggggccggaaaccagggctgggccgagacacgccgctcaaccacgtggaggcagagcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

140

Amino Acids

15.79

Weight (kDa)

6.42

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	175, 397
AccII	CGCG	1 cut(s)	112
AciI	CCGC	2 cut(s)	173, 395
AclWI	GGATC	2 cut(s)	156, 249
AcsI	RAATTY	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	406
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	319, 380, 409
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	2 cut(s)	249, 305
AluI	AGCT	2 cut(s)	249, 305
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	156, 249
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	364, 382
ApoI	RAATTY	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	112, 352
AspS9I	GGNCC	2 cut(s)	364, 382
AsuC2I	CCSGG	2 cut(s)	161, 320
AvaI	CYCGRG	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	307
BbrPI	CACGTG	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	307
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	130
BcnI	CCSGG	2 cut(s)	161, 320
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	3 cut(s)	161, 320, 375
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	364, 382
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	3 cut(s)	161, 320, 375
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	161, 320
Bsa29I	ATCGAT	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 380, 409
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	319, 380, 409
BseRI	GAGGAG	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	366, 384
BshVI	ATCGAT	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	161, 190, 320, 367
BslI	CCNNNNNNNGG	3 cut(s)	319, 380, 409
BsmAI	GTCTC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	366, 384
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	148, 241
BspACI	CCGC	2 cut(s)	173, 395
BspANI	GGCC	2 cut(s)	366, 384
BspDI	ATCGAT	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	2 cut(s)	156, 249
BspQI	GCTCTTC	1 cut(s)	34
BsrBI	CCGCTC	2 cut(s)	175, 397
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	2 cut(s)	148, 241
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	23, 142
Bst6I	CTCTTC	2 cut(s)	34, 231
BstBAI	YACGTR	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	112, 352
BstKTI	GATC	2 cut(s)	151, 244
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	2 cut(s)	148, 241
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	159, 318, 373
BstUI	CGCG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	366, 384
BsuTUI	ATCGAT	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	28
CfoI	GCGC	2 cut(s)	112, 352
Cfr13I	GGNCC	2 cut(s)	364, 382
ClaI	ATCGAT	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	133, 272
CviJI	RGCY	6 cut(s)	154, 249, 305, 366, 379, 384
CviKI_1	RGCY	6 cut(s)	154, 249, 305, 366, 379, 384
CviQI	GTAC	1 cut(s)	253
DpnI	GATC	2 cut(s)	150, 243
DpnII	GATC	2 cut(s)	148, 241
Eam1104I	CTCTTC	2 cut(s)	34, 231
EarI	CTCTTC	2 cut(s)	34, 231
Ecl136II	GAGCTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	305
Eco72I	CACGTG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	2 cut(s)	136, 275
FaiI	YATR	3 cut(s)	134, 218, 273
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	2 cut(s)	132, 271
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	2 cut(s)	111, 351
GluI	GCNGC	1 cut(s)	395
GsaI	CCCAGC	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	366, 384
HapII	CCGG	4 cut(s)	161, 190, 320, 367
HhaI	GCGC	2 cut(s)	112, 352
Hin1II	CATG	2 cut(s)	136, 275
Hin6I	GCGC	2 cut(s)	110, 350
HinP1I	GCGC	2 cut(s)	110, 350
HpaII	CCGG	4 cut(s)	161, 190, 320, 367
Hpy188I	TCNGA	2 cut(s)	148, 309
Hpy188III	TCNNGA	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	23, 142
HpyCH4IV	ACGT	2 cut(s)	228, 405
HpyCH4V	TGCA	1 cut(s)	232
HpySE526I	ACGT	2 cut(s)	228, 405
Hsp92II	CATG	2 cut(s)	136, 275
HspAI	GCGC	2 cut(s)	110, 350
Kzo9I	GATC	2 cut(s)	148, 241
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	302, 310
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	228, 405
MalI	GATC	2 cut(s)	150, 243
MbiI	CCGCTC	2 cut(s)	175, 397
MboI	GATC	2 cut(s)	148, 241
MboII	GAAGA	5 cut(s)	51, 248, 304, 307, 367
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	3 cut(s)	12, 86, 219
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	39, 109, 232, 403
MspI	CCGG	4 cut(s)	161, 190, 320, 367
MspR9I	CCNGG	3 cut(s)	161, 320, 375
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	112
NciI	CCSGG	2 cut(s)	161, 320
NdeII	GATC	2 cut(s)	148, 241
NlaIII	CATG	2 cut(s)	136, 275
NlaIV	GGNNCC	1 cut(s)	365
NmeAIII	GCCGAG	1 cut(s)	410
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	176
PciI	ACATGT	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	396
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	406
PscI	ACATGT	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	373
PspCI	CACGTG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	2 cut(s)	364, 382
PspXI	VCTCGAGB	1 cut(s)	176
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	34
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	2 cut(s)	148, 241
Sau96I	GGNCC	2 cut(s)	364, 382
ScrFI	CCNGG	3 cut(s)	161, 320, 375
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	4 cut(s)	231, 251, 307, 408
SfaNI	GCATC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	12, 86, 219
SsiI	CCGC	2 cut(s)	173, 395
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	3 cut(s)	159, 318, 373
TaaI	ACNGT	2 cut(s)	23, 142
TaiI	ACGT	2 cut(s)	231, 408
TaqI	TCGA	2 cut(s)	98, 177
TasI	AATT	3 cut(s)	12, 86, 219
TauI	GCSGC	1 cut(s)	397
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	172, 356
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	176
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.