Rmu_sc0008877.1_g000007
BHLH Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008877.1
Physical Location & Seq
Forward (+)
36673 .. 37986
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008877.1_g000007.1.cds

Sequence Viewer

Length: 603 bp
atgggtccctgtttgctgacgtggcagtgggtcaaggctcactccctcactcgatctttcgccgtcggggacggctctgttcccggcaaggcttttggctccgggacctcaatctggctgagcgtggcccacgagcttcagttcaacaactgtgagagagccaaagagacccaaatccacgggatcgagaccttgatctgcatcccaacttctgatggtcaagccaagtcgttgtttggggcggatcagcccgacctggaaacaagactgctcgagttcatcgaccggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggattacagctcgtacaatgacgacaagaaacatatttttggttctagcaagaagaagaacggagctccgaacccaaacccggacttcgtagattccgactgccagatgaaaagagcgccgaagacacggggacagaaacccgggctgggcctagacacgccgctcaaccacgtggaggtggagcggcagcggcgggagaagctcacctgcaagggcggcgttggaagcgagggagtgagctcggaagaaggaagacgaaagagataa

Protein Analysis

200

Amino Acids

22.05

Weight (kDa)

6.96

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 551
AccBSI CCGCTC 2 cut(s) 499, 520
AciI CCGC 6 cut(s) 242, 497, 520, 526, 529, 552
AclWI GGATC 2 cut(s) 191, 252
AcuI CTGAAG 1 cut(s) 122
AcvI CACGTG 1 cut(s) 508
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 114, 415, 482, 511
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 5 cut(s) 136, 345, 401, 538, 576
AluI AGCT 5 cut(s) 136, 345, 401, 538, 576
Alw21I GWGCWC 2 cut(s) 403, 578
Alw26I GTCTC 2 cut(s) 161, 182
AlwI GGATC 2 cut(s) 191, 252
Ama87I CYCGRG 2 cut(s) 272, 476
AoxI GGCC 2 cut(s) 126, 484
ApeKI GCWGC 1 cut(s) 523
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 4 cut(s) 5, 105, 127, 484
AsuC2I CCSGG 5 cut(s) 84, 103, 416, 477, 478
AsuHPI GGTGA 1 cut(s) 532
AvaI CYCGRG 2 cut(s) 272, 476
AvaII GGWCC 2 cut(s) 5, 105
BanII GRGCYC 2 cut(s) 403, 578
BauI CACGAG 1 cut(s) 131
BbrPI CACGTG 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 464, 595
Bbv12I GWGCWC 2 cut(s) 403, 578
BbvI GCAGC 1 cut(s) 535
BccI CCATC 1 cut(s) 209
BceAI ACGGC 2 cut(s) 47, 88
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 5 cut(s) 84, 103, 416, 477, 478
BcoDI GTCTC 2 cut(s) 161, 182
BfaI CTAG 2 cut(s) 381, 488
BfoI RGCGCY 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 5 cut(s) 497, 521, 524, 527, 553
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 5 cut(s) 498, 522, 525, 528, 554
Bme1390I CCNGG 6 cut(s) 84, 103, 257, 416, 477, 478
Bme18I GGWCC 2 cut(s) 5, 105
BmeT110I CYCGRG 2 cut(s) 272, 476
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 4 cut(s) 5, 105, 127, 484
BmiI GGNNCC 4 cut(s) 6, 7, 100, 106
BmrFI CCNGG 6 cut(s) 84, 103, 257, 416, 477, 478
BmsI GCATC 2 cut(s) 210, 321
BpiI GAAGAC 2 cut(s) 464, 595
Bpu1102I GCTNAGC 1 cut(s) 119
BpuMI CCSGG 5 cut(s) 84, 103, 416, 477, 478
BsaAI YACGTR 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 200
BsaI GGTCTC 2 cut(s) 161, 182
BsaJI CCNNGG 2 cut(s) 178, 476
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 415, 482, 511
Bse118I RCCGGY 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 178, 476
BseGI GGATG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 4 cut(s) 114, 415, 482, 511
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 535
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 128, 486
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 2 cut(s) 403, 578
BsiHKCI CYCGRG 2 cut(s) 272, 476
BsiSI CCGG 6 cut(s) 84, 102, 286, 321, 416, 477
BslFI GGGAC 3 cut(s) 83, 118, 480
BslI CCNNNNNNNGG 4 cut(s) 114, 415, 482, 511
BsmAI GTCTC 2 cut(s) 161, 182
BsmFI GGGAC 3 cut(s) 83, 118, 480
BsnI GGCC 2 cut(s) 128, 486
Bso31I GGTCTC 2 cut(s) 161, 182
BsoBI CYCGRG 2 cut(s) 272, 476
Bsp1286I GDGCHC 2 cut(s) 403, 578
Bsp143I GATC 4 cut(s) 53, 183, 195, 244
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 6 cut(s) 242, 497, 520, 526, 529, 552
BspANI GGCC 2 cut(s) 128, 486
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 4 cut(s) 6, 7, 100, 106
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 2 cut(s) 191, 252
BspTNI GGTCTC 2 cut(s) 161, 182
BsrBI CCGCTC 2 cut(s) 499, 520
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 178, 476
BssMI GATC 4 cut(s) 53, 183, 195, 244
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 322, 326
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 4 cut(s) 56, 186, 198, 247
BstMAI GTCTC 2 cut(s) 161, 182
BstMBI GATC 4 cut(s) 53, 183, 195, 244
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 5 cut(s) 22, 526, 535, 552, 561
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 6 cut(s) 82, 101, 255, 414, 475, 476
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 2 cut(s) 464, 595
BsuRI GGCC 2 cut(s) 128, 486
BtgI CCRYGG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 2 cut(s) 322, 326
CfoI GCGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 4 cut(s) 5, 105, 127, 484
Cfr9I CCCGGG 1 cut(s) 476
Csp6I GTAC 1 cut(s) 349
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 119
DpnI GATC 4 cut(s) 55, 185, 197, 246
DpnII GATC 4 cut(s) 53, 183, 195, 244
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 2 cut(s) 401, 576
Eco24I GRGCYC 2 cut(s) 403, 578
Eco31I GGTCTC 2 cut(s) 161, 182
Eco47I GGWCC 2 cut(s) 5, 105
Eco53kI GAGCTC 2 cut(s) 401, 576
Eco57I CTGAAG 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 508
Eco88I CYCGRG 2 cut(s) 272, 476
EcoICRI GAGCTC 2 cut(s) 401, 576
EcoO109I RGGNCCY 2 cut(s) 5, 105
EcoRII CCWGG 1 cut(s) 255
EcoT38I GRGCYC 2 cut(s) 403, 578
FaiI YATR 1 cut(s) 369
FaqI GGGAC 3 cut(s) 83, 118, 480
FauI CCCGC 1 cut(s) 522
Fnu4HI GCNGC 5 cut(s) 497, 521, 524, 527, 553
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 2 cut(s) 403, 578
Fsp4HI GCNGC 5 cut(s) 497, 521, 524, 527, 553
FspBI CTAG 2 cut(s) 381, 488
GlaI GCGC 1 cut(s) 453
GluI GCNGC 5 cut(s) 497, 521, 524, 527, 553
GsaI CCCAGC 1 cut(s) 485
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 2 cut(s) 128, 486
HapII CCGG 6 cut(s) 84, 102, 286, 321, 416, 477
HhaI GCGC 1 cut(s) 454
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HinfI GANTC 1 cut(s) 428
HpaII CCGG 6 cut(s) 84, 102, 286, 321, 416, 477
HphI GGTGA 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 214, 405, 433, 580
Hpy188III TCNNGA 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 2 cut(s) 20, 507
HpyCH4V TGCA 3 cut(s) 201, 328, 546
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 526, 535, 552, 561
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 20, 507
HspAI GCGC 1 cut(s) 452
KflI GGGWCCC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 320
KroNI GCCGGC 1 cut(s) 322
Kzo9I GATC 4 cut(s) 53, 183, 195, 244
LmnI GCTCC 4 cut(s) 104, 398, 406, 517
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 2 cut(s) 210, 321
MaeI CTAG 2 cut(s) 381, 488
MaeII ACGT 2 cut(s) 20, 507
MalI GATC 4 cut(s) 55, 185, 197, 246
MbiI CCGCTC 2 cut(s) 499, 520
MboI GATC 4 cut(s) 53, 183, 195, 244
MboII GAAGA 6 cut(s) 344, 400, 403, 469, 593, 600
MhlI GDGCHC 2 cut(s) 403, 578
MmeI TCCRAC 2 cut(s) 456, 538
MnlI CCTC 5 cut(s) 56, 118, 328, 505, 559
MroNI GCCGGC 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 6 cut(s) 84, 102, 286, 321, 416, 477
MspR9I CCNGG 6 cut(s) 84, 103, 257, 416, 477, 478
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 5 cut(s) 22, 526, 535, 552, 561
NaeI GCCGGC 1 cut(s) 322
NciI CCSGG 5 cut(s) 84, 103, 416, 477, 478
NdeII GATC 4 cut(s) 53, 183, 195, 244
NgoMIV GCCGGC 1 cut(s) 320
NlaIV GGNNCC 4 cut(s) 6, 7, 100, 106
PaeR7I CTCGAG 1 cut(s) 272
PaqCI CACCTGC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 429
PdiI GCCGGC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 101
PkrI GCNGC 5 cut(s) 498, 522, 525, 528, 554
PmaCI CACGTG 1 cut(s) 508
PmlI CACGTG 1 cut(s) 508
Ppu21I YACGTR 1 cut(s) 508
PpuMI RGGWCCY 2 cut(s) 5, 105
Psp124BI GAGCTC 2 cut(s) 403, 578
Psp5II RGGWCCY 2 cut(s) 5, 105
Psp6I CCWGG 1 cut(s) 255
PspCI CACGTG 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 4 cut(s) 6, 7, 100, 106
PspPI GGNCC 4 cut(s) 5, 105, 127, 484
PspPPI RGGWCCY 2 cut(s) 5, 105
PspXI VCTCGAGB 1 cut(s) 272
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SacI GAGCTC 2 cut(s) 403, 578
SatI GCNGC 5 cut(s) 497, 521, 524, 527, 553
Sau3AI GATC 4 cut(s) 53, 183, 195, 244
Sau96I GGNCC 4 cut(s) 5, 105, 127, 484
ScrFI CCNGG 6 cut(s) 84, 103, 257, 416, 477, 478
SduI GDGCHC 2 cut(s) 403, 578
SfaNI GCATC 2 cut(s) 210, 321
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 2 cut(s) 5, 105
SlaI CTCGAG 1 cut(s) 272
SmaI CCCGGG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SsiI CCGC 6 cut(s) 242, 497, 520, 526, 529, 552
SspMI CTAG 2 cut(s) 381, 488
SstI GAGCTC 2 cut(s) 403, 578
StyD4I CCNGG 6 cut(s) 82, 101, 255, 414, 475, 476
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 2 cut(s) 23, 510
TaqI TCGA 4 cut(s) 52, 186, 273, 282
TauI GCSGC 4 cut(s) 499, 523, 529, 555
TfiI GAWTC 1 cut(s) 428
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 523
TspDTI ATGAA 2 cut(s) 268, 458
TspGWI ACGGA 1 cut(s) 411
TspMI CCCGGG 1 cut(s) 476
TspRI CASTG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 5, 105
XhoI CTCGAG 1 cut(s) 272
XmaI CCCGGG 1 cut(s) 476
XspI CTAG 2 cut(s) 381, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.