Rroxscaffold_5G00346440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000212
Physical Location & Seq
Forward (+)
17285653 .. 17286191
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346440.1

Sequence Viewer

Length: 234 bp
ATGCAAGAATTGCTCCTCAAAACCGTTCCCAGAAAAGCTGATTCTGAAACTGCAGTTTCTGCTTTGCAGCAACTGTTTTGGACAATGAATTCCATGGACTTACCTTCTCGTTATTACGACGCCAAGGTGCAGTCTCGGACACTTAAATTGGGGGCGGGTCATAAGCGGGTTTACCCGGCACCCGGGGGTTGGATCCATCTGGACGGGGCCCTTACGAGATCGTCGAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.67

Weight (kDa)

10.08

Isoelectric Point (pI)

64.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 178
AciI CCGC 2 cut(s) 155, 166
AclWI GGATC 2 cut(s) 187, 200
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 182, 189
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 187, 200
AlwNI CAGNNNCTG 2 cut(s) 59, 73
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 1 cut(s) 207
ApaI GGGCCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 207, 208
AsuC2I CCSGG 3 cut(s) 176, 183, 184
AvaI CYCGRG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 211
BamHI GGATCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 204
BcnI CCSGG 3 cut(s) 176, 183, 184
BcoDI GTCTC 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 3 cut(s) 176, 183, 184
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 207, 208
BmiI GGNNCC 4 cut(s) 180, 194, 208, 209
BmrFI CCNGG 3 cut(s) 176, 183, 184
BpuMI CCSGG 3 cut(s) 176, 183, 184
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 93, 123, 182, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 189
BseDI CCNNGG 4 cut(s) 93, 123, 182, 183
BseLI CCNNNNNNNGG 2 cut(s) 182, 189
BseRI GAGGAG 1 cut(s) 5
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 2 cut(s) 176, 183
BslI CCNNNNNNNGG 2 cut(s) 182, 189
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 182
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 192, 218
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 155, 166
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 4 cut(s) 180, 194, 208, 209
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 2 cut(s) 187, 200
BspT107I GGYRCC 1 cut(s) 178
BssECI CCNNGG 4 cut(s) 93, 123, 182, 183
BssMI GATC 2 cut(s) 192, 218
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 93, 123
Bst4CI ACNGT 2 cut(s) 25, 75
Bst6I CTCTTC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 10, 59
BstDSI CCRYGG 1 cut(s) 93
BstKTI GATC 2 cut(s) 195, 221
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 192, 218
BstMWI GCNNNNNNNGC 2 cut(s) 10, 59
BstSCI CCNGG 3 cut(s) 174, 181, 182
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 93
CaiI CAGNNNCTG 2 cut(s) 59, 73
Cfr13I GGNCC 2 cut(s) 207, 208
Cfr9I CCCGGG 1 cut(s) 182
CseI GACGC 1 cut(s) 128
CviAII CATG 1 cut(s) 94
CviJI RGCY 2 cut(s) 38, 209
CviKI_1 RGCY 2 cut(s) 38, 209
DpnI GATC 2 cut(s) 194, 220
DpnII GATC 2 cut(s) 192, 218
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 93, 123
Eco24I GRGCYC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 182
EcoO109I RGGNCCY 2 cut(s) 207, 208
EcoRI GAATTC 1 cut(s) 88
EcoT14I CCWWGG 2 cut(s) 93, 123
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 2 cut(s) 93, 123
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 162
FatI CATG 1 cut(s) 93
FauI CCCGC 2 cut(s) 148, 159
Fnu4HI GCNGC 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 176, 183
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 97
HinfI GANTC 1 cut(s) 41
HpaII CCGG 2 cut(s) 176, 183
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 46, 138
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 2 cut(s) 122, 226
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 25, 75
HpyCH4V TGCA 4 cut(s) 4, 53, 67, 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 59
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 2 cut(s) 192, 218
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 4 cut(s) 43, 185, 189, 196
Lsp1109I GCAGC 1 cut(s) 79
MalI GATC 2 cut(s) 194, 220
MboI GATC 2 cut(s) 192, 218
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 3 cut(s) 8, 88, 146
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 2 cut(s) 26, 222
MseI TTAA 1 cut(s) 144
MspI CCGG 2 cut(s) 176, 183
MspR9I CCNGG 3 cut(s) 176, 183, 184
MwoI GCNNNNNNNGC 2 cut(s) 10, 59
NciI CCSGG 3 cut(s) 176, 183, 184
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 192, 218
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 4 cut(s) 180, 194, 208, 209
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 69
PspN4I GGNNCC 4 cut(s) 180, 194, 208, 209
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 207, 208
PstI CTGCAG 1 cut(s) 55
PstNI CAGNNNCTG 2 cut(s) 59, 73
PsuI RGATCY 1 cut(s) 192
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 2 cut(s) 192, 218
Sau96I GGNCC 2 cut(s) 207, 208
ScrFI CCNGG 3 cut(s) 176, 183, 184
SduI GDGCHC 1 cut(s) 211
SetI ASST 4 cut(s) 40, 106, 129, 233
SfcI CTRYAG 1 cut(s) 51
SmaI CCCGGG 1 cut(s) 184
Sse9I AATT 3 cut(s) 8, 88, 146
SsiI CCGC 2 cut(s) 155, 166
StyD4I CCNGG 3 cut(s) 174, 181, 182
StyI CCWWGG 2 cut(s) 93, 123
TaaI ACNGT 2 cut(s) 25, 75
TaqI TCGA 1 cut(s) 224
TasI AATT 3 cut(s) 8, 88, 146
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 101
TspMI CCCGGG 1 cut(s) 182
XapI RAATTY 1 cut(s) 88
XmaI CCCGGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.