Rmu_sc0004145.1_g000003
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004145.1
OG0000212
Physical Location & Seq
Forward (+)
15514 .. 17309
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004145.1_g000003.1.cds

Sequence Viewer

Length: 744 bp
atgaacttatgttgtgatgttagttgcggtgaggaagccgagtgccacgacggcgtggcccgcctccgtaaaatccaagtctcaaatctggaggccaagagtcgtgaaactgtctacaccgctctggcttgcaataaattcaaagaagcaaagttgtgcttagagaactctgacgagatggagtccccggcggtgtccgccttcggctctgggacctcaatctggcagagcggggcccacgagattcagttcaacaactgcgagagagccaaagaggcccaaatccacgggatcgagaccttgatctgcatcccaacttccgacggagttcttgaaatggacccggaaacaagaccgctcgagttcatcaacctgaacttctccatttttgacatcaccatcattgccggcatgctggaagaggatcacagctcgtacaatgacgacaagaaacatgattttggttctagcaagaagaagaatggagctccgaacctaaagccggacttcgcagattctgactgccagatgaaaagagcgacgaagaaacggggccggaaacccgtgctgggccgagacacgccgctcaaccacgtggaggaggagcagcatcggcgggagaagctcacctcgcaagggcgacgttggaagcgagggagtgagcgtggaggtgaggaaggcggcgttggaagcgagggagtgagcgtggaggtgaggaaggcggcgttggaagcgagggagtga

Protein Analysis

247

Amino Acids

27.46

Weight (kDa)

5.64

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 122, 231, 358, 586
AccI GTMKAC 1 cut(s) 114
AclWI GGATC 2 cut(s) 299, 432
AcsI RAATTY 1 cut(s) 137
AcvI CACGTG 1 cut(s) 595
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 5 cut(s) 222, 502, 569, 598, 636
AgsI TTSAA 3 cut(s) 142, 253, 335
AjuI GAANNNNNNNTTGG 4 cut(s) 669, 701, 710, 742
AluBI AGCT 3 cut(s) 432, 488, 625
AluI AGCT 3 cut(s) 432, 488, 625
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 3 cut(s) 85, 290, 570
AlwI GGATC 2 cut(s) 299, 432
AlwNI CAGNNNCTG 1 cut(s) 518
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 6 cut(s) 57, 93, 234, 276, 553, 571
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 607
ApoI RAATTY 1 cut(s) 137
AspS9I GGNCC 8 cut(s) 58, 213, 234, 235, 277, 340, 553, 571
AsuC2I CCSGG 2 cut(s) 188, 344
AsuHPI GGTGA 5 cut(s) 41, 388, 619, 683, 724
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 213, 340
BaeGI GKGCMC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 238, 490
BauI CACGAG 1 cut(s) 239
BbrPI CACGTG 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 1 cut(s) 619
BccI CCATC 2 cut(s) 172, 407
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 2 cut(s) 188, 344
BcoDI GTCTC 3 cut(s) 85, 290, 570
BfaI CTAG 1 cut(s) 468
BglI GCCNNNNNGGC 2 cut(s) 51, 275
BisI GCNGC 4 cut(s) 584, 608, 682, 723
BlsI GCNGC 4 cut(s) 585, 609, 683, 724
Bme1390I CCNGG 2 cut(s) 188, 344
Bme18I GGWCC 2 cut(s) 213, 340
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 8 cut(s) 58, 213, 234, 235, 277, 340, 553, 571
BmiI GGNNCC 5 cut(s) 214, 235, 236, 342, 554
BmrFI CCNGG 2 cut(s) 188, 344
BmsI GCATC 2 cut(s) 318, 619
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 2 cut(s) 188, 344
BsaAI YACGTR 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 186, 286
BsaXI ACNNNNNCTCC 4 cut(s) 649, 679, 690, 720
Bsc4I CCNNNNNNNGG 5 cut(s) 222, 502, 569, 598, 636
Bse118I RCCGGY 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 402
Bse8I GATNNNNATC 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 186, 286
BseGI GGATG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 5 cut(s) 222, 502, 569, 598, 636
BseMI GCAATG 1 cut(s) 402
BseRI GAGGAG 2 cut(s) 614, 617
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 1 cut(s) 568
BshFI GGCC 6 cut(s) 59, 95, 236, 278, 555, 573
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 5 cut(s) 188, 344, 408, 503, 556
BslFI GGGAC 2 cut(s) 169, 226
BslI CCNNNNNNNGG 5 cut(s) 222, 502, 569, 598, 636
BsmAI GTCTC 3 cut(s) 85, 290, 570
BsmFI GGGAC 2 cut(s) 169, 226
BsnI GGCC 6 cut(s) 59, 95, 236, 278, 555, 573
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 359
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 238, 490
Bsp143I GATC 3 cut(s) 291, 303, 424
BspANI GGCC 6 cut(s) 59, 95, 236, 278, 555, 573
BspLI GGNNCC 5 cut(s) 214, 235, 236, 342, 554
BspPI GGATC 2 cut(s) 299, 432
BspTNI GGTCTC 1 cut(s) 290
BsrBI CCGCTC 4 cut(s) 122, 231, 358, 586
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 186, 286
BssMI GATC 3 cut(s) 291, 303, 424
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 4 cut(s) 61, 130, 409, 413
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 3 cut(s) 294, 306, 427
BstMAI GTCTC 3 cut(s) 85, 290, 570
BstMBI GATC 3 cut(s) 291, 303, 424
BstMWI GCNNNNNNNGC 9 cut(s) 51, 60, 197, 275, 613, 622, 631, 690, 731
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 186, 342
BstSLI GKGCMC 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 619
BsuRI GGCC 6 cut(s) 59, 95, 236, 278, 555, 573
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 61, 130, 409, 413
CaiI CAGNNNCTG 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 8 cut(s) 58, 213, 234, 235, 277, 340, 553, 571
Csp6I GTAC 1 cut(s) 436
CviAII CATG 2 cut(s) 412, 455
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 160
DpnI GATC 3 cut(s) 293, 305, 426
DpnII GATC 3 cut(s) 291, 303, 424
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
EciI GGCGGA 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 488
Eco24I GRGCYC 2 cut(s) 238, 490
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 2 cut(s) 213, 340
Eco53kI GAGCTC 1 cut(s) 488
Eco72I CACGTG 1 cut(s) 595
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 488
EcoO109I RGGNCCY 2 cut(s) 213, 234
EcoT38I GRGCYC 2 cut(s) 238, 490
FaeI CATG 2 cut(s) 415, 458
FaiI YATR 3 cut(s) 10, 413, 456
FalI AAGNNNNNCTT 4 cut(s) 143, 175, 491, 523
FaqI GGGAC 2 cut(s) 169, 226
FatI CATG 2 cut(s) 411, 454
FauI CCCGC 3 cut(s) 68, 224, 609
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 584, 608, 682, 723
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 2 cut(s) 238, 490
Fsp4HI GCNGC 4 cut(s) 584, 608, 682, 723
FspBI CTAG 1 cut(s) 468
GluI GCNGC 4 cut(s) 584, 608, 682, 723
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 6 cut(s) 59, 95, 236, 278, 555, 573
HapII CCGG 5 cut(s) 188, 344, 408, 503, 556
Hin1II CATG 2 cut(s) 415, 458
HinfI GANTC 4 cut(s) 100, 182, 244, 515
HpaII CCGG 5 cut(s) 188, 344, 408, 503, 556
HphI GGTGA 5 cut(s) 41, 388, 619, 683, 724
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 172, 322, 492, 520
Hpy188III TCNNGA 4 cut(s) 89, 104, 295, 332
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 4 cut(s) 53, 326, 544, 645
HpyAV CCTTC 3 cut(s) 211, 671, 712
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 594, 643
HpyCH4V TGCA 2 cut(s) 132, 309
HpyF10VI GCNNNNNNNGC 9 cut(s) 51, 60, 197, 275, 613, 622, 631, 690, 731
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 2 cut(s) 594, 643
Hsp92II CATG 2 cut(s) 415, 458
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
Kzo9I GATC 3 cut(s) 291, 303, 424
LmnI GCTCC 3 cut(s) 485, 493, 604
Lsp1109I GCAGC 1 cut(s) 619
LweI GCATC 2 cut(s) 318, 619
MaeI CTAG 1 cut(s) 468
MaeII ACGT 2 cut(s) 594, 643
MalI GATC 3 cut(s) 293, 305, 426
MbiI CCGCTC 4 cut(s) 122, 231, 358, 586
MboI GATC 3 cut(s) 291, 303, 424
MboII GAAGA 4 cut(s) 431, 487, 490, 556
MhlI GDGCHC 2 cut(s) 238, 490
MluCI AATT 1 cut(s) 137
MlyI GAGTC 2 cut(s) 109, 191
MmeI TCCRAC 4 cut(s) 345, 626, 667, 708
MroNI GCCGGC 1 cut(s) 407
MspI CCGG 5 cut(s) 188, 344, 408, 503, 556
MspR9I CCNGG 2 cut(s) 188, 344
MwoI GCNNNNNNNGC 9 cut(s) 51, 60, 197, 275, 613, 622, 631, 690, 731
NaeI GCCGGC 1 cut(s) 409
NciI CCSGG 2 cut(s) 188, 344
NdeII GATC 3 cut(s) 291, 303, 424
NgoMIV GCCGGC 1 cut(s) 407
NlaIII CATG 2 cut(s) 415, 458
NlaIV GGNNCC 5 cut(s) 214, 235, 236, 342, 554
NmeAIII GCCGAG 2 cut(s) 64, 599
NspI RCATGY 1 cut(s) 415
PaeI GCATGC 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 244, 515
PkrI GCNGC 4 cut(s) 585, 609, 683, 724
PleI GAGTC 2 cut(s) 108, 190
PmaCI CACGTG 1 cut(s) 595
PmlI CACGTG 1 cut(s) 595
PpsI GAGTC 2 cut(s) 108, 190
Ppu21I YACGTR 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 490
Psp5II RGGWCCY 1 cut(s) 213
PspCI CACGTG 1 cut(s) 595
PspFI CCCAGC 1 cut(s) 568
PspN4I GGNNCC 5 cut(s) 214, 235, 236, 342, 554
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 8 cut(s) 58, 213, 234, 235, 277, 340, 553, 571
PspPPI RGGWCCY 1 cut(s) 213
PspXI VCTCGAGB 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SacI GAGCTC 1 cut(s) 490
SatI GCNGC 4 cut(s) 584, 608, 682, 723
Sau3AI GATC 3 cut(s) 291, 303, 424
Sau96I GGNCC 8 cut(s) 58, 213, 234, 235, 277, 340, 553, 571
SchI GAGTC 2 cut(s) 109, 191
ScrFI CCNGG 2 cut(s) 188, 344
SduI GDGCHC 2 cut(s) 238, 490
SfaNI GCATC 2 cut(s) 318, 619
Sfr274I CTCGAG 1 cut(s) 359
SinI GGWCC 2 cut(s) 213, 340
SlaI CTCGAG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 415
Sse9I AATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 468
SstI GAGCTC 1 cut(s) 490
StyD4I CCNGG 2 cut(s) 186, 342
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 597, 646
TaqI TCGA 2 cut(s) 294, 360
TasI AATT 1 cut(s) 137
TauI GCSGC 3 cut(s) 586, 684, 725
TfiI GAWTC 2 cut(s) 244, 515
TseI GCWGC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 17, 355, 545
TspGWI ACGGA 2 cut(s) 56, 339
VpaK11BI GGWCC 2 cut(s) 213, 340
XapI RAATTY 1 cut(s) 137
XceI RCATGY 1 cut(s) 415
XhoI CTCGAG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.