Rmu_sc0002283.1_g000088
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002283.1
OG0000212
Physical Location & Seq
Forward (+)
317392 .. 318165
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002283.1_g000088.1.cds

Sequence Viewer

Length: 774 bp
atggaagcctgtttttcaccccataatctttgtcaagaaacctctgcagccacacttcagcaacacctccagttcattcttcaaaaccgtcctgacttttgggtctactccattttctggcaagcctccaaagacggccacaatgccatttcgttatcatgggccggcggtcatttccgagggaccagagacttctcatccaaaacatcaaccactaataagctagataacaattaccaaccaacaatagggttcgatctggagacaccaaagaaggggatcaacaaagaagtcgaagctttgttccatgaagacatgaacatggatggactgttcgacattaacggagatgtcactgactcggagtggttttacttctacaccgtttctcatttgacagagtcctttgctgcaggccttgagagtaacaacattcttggccatgcattttgttctggtgcttttgtttggttggcaggcgaccacgagcttaagttttatgagtgtgagagagttaaagaggcccacatgcatggaattcaaacttttgtttgcattgcaacaccctttggggtgcttgaactggcttctttagaagtgattaaacaagactggggttttgtgcagctttgcaagtctatttttggatctgacctaataacaaccaccgccagcgtctcaaactcaaagcagggtcatgttcatgttcctcagttacaagacgggatattttcaagatcggttcagaaggagtggaccacacaaggtgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

257

Amino Acids

28.95

Weight (kDa)

5.2

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 1 cut(s) 105
AciI CCGC 2 cut(s) 168, 669
AclWI GGATC 2 cut(s) 287, 655
AcoI YGGCCR 2 cut(s) 136, 439
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 767
AfiI CCNNNNNNNGG 3 cut(s) 117, 248, 275
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 4 cut(s) 83, 542, 581, 735
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 4 cut(s) 223, 299, 490, 628
AluI AGCT 4 cut(s) 223, 299, 490, 628
Alw26I GTCTC 3 cut(s) 183, 257, 682
AlwI GGATC 2 cut(s) 287, 655
AoxI GGCC 5 cut(s) 136, 162, 415, 439, 522
ApeKI GCWGC 3 cut(s) 47, 410, 625
ApoI RAATTY 1 cut(s) 537
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspS9I GGNCC 4 cut(s) 162, 183, 523, 756
AsuHPI GGTGA 1 cut(s) 9
AvaII GGWCC 2 cut(s) 183, 756
BalI TGGCCA 1 cut(s) 441
BauI CACGAG 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 59, 397, 637
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 151
BcoDI GTCTC 3 cut(s) 183, 257, 682
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 2 cut(s) 45, 411
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 3 cut(s) 48, 411, 626
BlsI GCNGC 3 cut(s) 49, 412, 627
Bme18I GGWCC 2 cut(s) 183, 756
BmgT120I GGNCC 4 cut(s) 162, 183, 523, 756
BmiI GGNNCC 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 2 cut(s) 53, 281
BpuEI CTTGAG 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 248, 275
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 70, 588, 617
Bse3DI GCAATG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 197, 331
BseLI CCNNNNNNNGG 3 cut(s) 117, 248, 275
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 3 cut(s) 70, 588, 617
BseXI GCAGC 3 cut(s) 59, 397, 637
BsgI GTGCAG 1 cut(s) 644
BshFI GGCC 5 cut(s) 138, 164, 417, 441, 524
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 3 cut(s) 117, 248, 275
BsmAI GTCTC 3 cut(s) 183, 257, 682
BsmBI CGTCTC 1 cut(s) 682
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 5 cut(s) 138, 164, 417, 441, 524
Bsp143I GATC 4 cut(s) 256, 279, 647, 737
BspACI CCGC 2 cut(s) 168, 669
BspANI GGCC 5 cut(s) 138, 164, 417, 441, 524
BspCNI CTCAG 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 2 cut(s) 49, 415
BspPI GGATC 2 cut(s) 287, 655
BspTI CTTAAG 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 3 cut(s) 70, 588, 617
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 4 cut(s) 256, 279, 647, 737
BssSI CACGAG 1 cut(s) 485
Bst2BI CACGAG 1 cut(s) 485
Bst4CI ACNGT 3 cut(s) 89, 333, 385
BstAFI CTTAAG 1 cut(s) 491
BstC8I GCNNGC 5 cut(s) 123, 166, 415, 478, 673
BstDEI CTNAG 1 cut(s) 711
BstF5I GGATG 2 cut(s) 197, 331
BstKTI GATC 4 cut(s) 259, 282, 650, 740
BstMAI GTCTC 3 cut(s) 183, 257, 682
BstMBI GATC 4 cut(s) 256, 279, 647, 737
BstNSI RCATGY 1 cut(s) 532
BstSFI CTRYAG 2 cut(s) 45, 411
BstV1I GCAGC 3 cut(s) 59, 397, 637
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 647
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 1 cut(s) 647
BsuRI GGCC 5 cut(s) 138, 164, 417, 441, 524
BtsCI GGATG 2 cut(s) 197, 331
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 5 cut(s) 123, 166, 415, 478, 673
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 162, 183, 523, 756
CseI GACGC 1 cut(s) 664
CviAII CATG 9 cut(s) 159, 308, 316, 322, 443, 529, 533, 698, 704
DdeI CTNAG 1 cut(s) 711
DpnI GATC 4 cut(s) 258, 281, 649, 739
DpnII GATC 4 cut(s) 256, 279, 647, 737
DraIII CACNNNGTG 1 cut(s) 767
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 136, 439
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 183, 756
Eco57I CTGAAG 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 537
EcoT22I ATGCAT 2 cut(s) 448, 534
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 9 cut(s) 162, 311, 319, 325, 446, 532, 536, 701, 707
FaqI GGGAC 1 cut(s) 196
FatI CATG 9 cut(s) 158, 307, 315, 321, 442, 528, 532, 697, 703
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 48, 411, 626
FokI GGATG 2 cut(s) 184, 338
Fsp4HI GCNGC 3 cut(s) 48, 411, 626
FspBI CTAG 1 cut(s) 224
GluI GCNGC 3 cut(s) 48, 411, 626
GsuI CTGGAG 2 cut(s) 53, 281
HaeIII GGCC 5 cut(s) 138, 164, 417, 441, 524
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 664
Hin1II CATG 9 cut(s) 162, 311, 319, 325, 446, 532, 536, 701, 707
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 2 cut(s) 359, 401
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 106, 756
Hpy188I TCNGA 4 cut(s) 179, 364, 652, 747
Hpy188III TCNNGA 4 cut(s) 35, 92, 260, 735
Hpy8I GTNNAC 2 cut(s) 106, 756
HpyAV CCTTC 2 cut(s) 268, 742
HpyCH4III ACNGT 3 cut(s) 89, 333, 385
HpyCH4V TGCA 8 cut(s) 47, 413, 446, 532, 555, 560, 625, 633
HpyF3I CTNAG 1 cut(s) 711
Hsp92II CATG 9 cut(s) 162, 311, 319, 325, 446, 532, 536, 701, 707
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 4 cut(s) 256, 279, 647, 737
Lsp1109I GCAGC 3 cut(s) 59, 397, 637
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 352, 425, 714
MalI GATC 4 cut(s) 258, 281, 649, 739
MboI GATC 4 cut(s) 256, 279, 647, 737
MboII GAAGA 2 cut(s) 71, 323
MflI RGATCY 1 cut(s) 647
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 2 cut(s) 232, 537
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 2 cut(s) 353, 410
MnlI CCTC 6 cut(s) 52, 77, 136, 173, 514, 720
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 2 cut(s) 448, 534
MroNI GCCGGC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 441
MseI TTAA 4 cut(s) 342, 492, 516, 603
MslI CAYNNNNRTG 3 cut(s) 320, 531, 702
Msp20I TGGCCA 1 cut(s) 441
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 1 cut(s) 165
NaeI GCCGGC 1 cut(s) 166
NdeII GATC 4 cut(s) 256, 279, 647, 737
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 9 cut(s) 162, 311, 319, 325, 446, 532, 536, 701, 707
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 2 cut(s) 448, 534
NspI RCATGY 1 cut(s) 532
PceI AGGCCT 1 cut(s) 417
PdiI GCCGGC 1 cut(s) 166
PflFI GACNNNGTC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 117
PkrI GCNGC 3 cut(s) 49, 412, 627
PleI GAGTC 2 cut(s) 353, 409
PpsI GAGTC 2 cut(s) 353, 409
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 4 cut(s) 162, 183, 523, 756
PstI CTGCAG 2 cut(s) 49, 415
PsuI RGATCY 1 cut(s) 647
PsyI GACNNNGTC 1 cut(s) 400
RseI CAYNNNNRTG 3 cut(s) 320, 531, 702
SaqAI TTAA 4 cut(s) 342, 492, 516, 603
SatI GCNGC 3 cut(s) 48, 411, 626
Sau3AI GATC 4 cut(s) 256, 279, 647, 737
Sau96I GGNCC 4 cut(s) 162, 183, 523, 756
SchI GAGTC 2 cut(s) 353, 410
SetI ASST 8 cut(s) 44, 69, 225, 301, 492, 630, 657, 769
SfcI CTRYAG 2 cut(s) 45, 411
SinI GGWCC 2 cut(s) 183, 756
SmiMI CAYNNNNRTG 3 cut(s) 320, 531, 702
SmlI CTYRAG 2 cut(s) 419, 491
SmoI CTYRAG 2 cut(s) 419, 491
Sse9I AATT 2 cut(s) 232, 537
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 2 cut(s) 168, 669
SspMI CTAG 1 cut(s) 224
StuI AGGCCT 1 cut(s) 417
TaaI ACNGT 3 cut(s) 89, 333, 385
TaqI TCGA 3 cut(s) 255, 294, 336
TasI AATT 2 cut(s) 232, 537
Tru1I TTAA 4 cut(s) 342, 492, 516, 603
Tru9I TTAA 4 cut(s) 342, 492, 516, 603
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 47, 410, 625
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 4 cut(s) 64, 324, 332, 692
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 361
Tth111I GACNNNGTC 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 183, 756
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 2 cut(s) 448, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.