Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002939.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

67860 .. 68995

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002939.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgcaggaagaggatcacagctcgtacaatgacgacaagaaacatatttttggttctagcaagaagaagaacgaagctccgaacccaaacccggacttcacagattctgattgccagatgaaaaaagcgccgaagaaattgggccggaaacctgggctgggccgagacacaccgctcaaccacgtggaggcggagcggctgcggcgggagaagctcacctcacaagggcggcgttggaagcgagggagtgagcgtggaggtgaggaaggcggcgttggaagtgagggactgcagtcggggagcggcaagcttcgttcctgttcttgtaaggcgtggtcgaggattgctacagtcgagaccaggctgatcctactcaatctgatgctgtggtctaaagtcctgccgttggaagacataacagcggcagaggcaagggagcagcagtgcaatgaaactcttcctctctctgcttgggtttgggtctgggctcaacctcggactgatgaggcagggaactttcctactaggaaagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

178

Amino Acids

20.06

Weight (kDa)

9.08

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	175, 196, 303
AciI	CCGC	9 cut(s)	173, 191, 196, 202, 205, 229, 270, 303, 422
AclWI	GGATC	2 cut(s)	21, 361
AcvI	CACGTG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	5 cut(s)	91, 158, 187, 225, 406
AjnI	CCWGG	2 cut(s)	151, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	4 cut(s)	21, 77, 214, 310
AluI	AGCT	4 cut(s)	21, 77, 214, 310
Alw26I	GTCTC	2 cut(s)	159, 350
AlwI	GGATC	2 cut(s)	21, 361
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	142, 160
ApeKI	GCWGC	2 cut(s)	199, 439
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	142, 160
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	208, 272
BanII	GRGCYC	1 cut(s)	490
BbrPI	CACGTG	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	186, 451
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	153, 361
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	159, 350
BfaI	CTAG	3 cut(s)	57, 525, 535
BfmI	CTRYAG	2 cut(s)	290, 348
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	8 cut(s)	197, 200, 203, 230, 271, 304, 423, 440
BlsI	GCNGC	8 cut(s)	198, 201, 204, 231, 272, 305, 424, 441
Bme1390I	CCNGG	3 cut(s)	92, 153, 361
BmgT120I	GGNCC	2 cut(s)	142, 160
BmrFI	CCNGG	3 cut(s)	92, 153, 361
BmsI	GCATC	1 cut(s)	372
BoxI	GACNNNNGTC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	152, 494
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 428, 458
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 158, 187, 225, 406
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	153, 361
BseDI	CCNNGG	2 cut(s)	152, 494
BseLI	CCNNNNNNNGG	5 cut(s)	91, 158, 187, 225, 406
BseMI	GCAATG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	186, 451
BseYI	CCCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	144, 162
BsiSI	CCGG	2 cut(s)	92, 145
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	5 cut(s)	91, 158, 187, 225, 406
BsmAI	GTCTC	2 cut(s)	159, 350
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	144, 162
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	13, 366
BspACI	CCGC	9 cut(s)	173, 191, 196, 202, 205, 229, 270, 303, 422
BspANI	GGCC	2 cut(s)	144, 162
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	2 cut(s)	21, 361
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	3 cut(s)	175, 196, 303
BsrDI	GCAATG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	152, 494
BssMI	GATC	2 cut(s)	13, 366
Bst2UI	CCWGG	2 cut(s)	153, 361
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	3, 462
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	16, 369
BstMAI	GTCTC	2 cut(s)	159, 350
BstMBI	GATC	2 cut(s)	13, 366
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 211, 238, 428
BstNI	CCWGG	2 cut(s)	153, 361
BstPAI	GACNNNNGTC	1 cut(s)	292
BstSCI	CCNGG	3 cut(s)	90, 151, 359
BstSFI	CTRYAG	2 cut(s)	290, 348
BstV1I	GCAGC	2 cut(s)	186, 451
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	144, 162
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	308
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	142, 160
Csp6I	GTAC	1 cut(s)	25
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	2 cut(s)	15, 368
DpnII	GATC	2 cut(s)	13, 366
Eam1104I	CTCTTC	2 cut(s)	3, 462
EarI	CTCTTC	2 cut(s)	3, 462
EciI	GGCGGA	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	350
Eco72I	CACGTG	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	151, 359
EcoT38I	GRGCYC	1 cut(s)	490
FaiI	YATR	2 cut(s)	45, 416
FaqI	GGGAC	1 cut(s)	300
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	8 cut(s)	197, 200, 203, 230, 271, 304, 423, 440
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	8 cut(s)	197, 200, 203, 230, 271, 304, 423, 440
FspBI	CTAG	3 cut(s)	57, 525, 535
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	8 cut(s)	197, 200, 203, 230, 271, 304, 423, 440
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	144, 162
HapII	CCGG	2 cut(s)	92, 145
HhaI	GCGC	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	2 cut(s)	92, 145
HphI	GGTGA	2 cut(s)	208, 272
Hpy188I	TCNGA	4 cut(s)	81, 109, 381, 498
Hpy188III	TCNNGA	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	4, 292, 447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 211, 238, 428
HpySE526I	ACGT	1 cut(s)	183
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	13, 366
LmnI	GCTCC	4 cut(s)	82, 193, 300, 436
Lsp1109I	GCAGC	2 cut(s)	186, 451
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	3 cut(s)	57, 525, 535
MaeII	ACGT	1 cut(s)	183
MalI	GATC	2 cut(s)	15, 368
MbiI	CCGCTC	3 cut(s)	175, 196, 303
MboI	GATC	2 cut(s)	13, 366
MboII	GAAGA	6 cut(s)	20, 76, 79, 145, 422, 449
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	1 cut(s)	137
MmeI	TCCRAC	3 cut(s)	215, 256, 387
MroXI	GAANNNNTTC	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	92, 145
MspR9I	CCNGG	3 cut(s)	92, 153, 361
MvaI	CCWGG	2 cut(s)	153, 361
MwoI	GCNNNNNNNGC	4 cut(s)	202, 211, 238, 428
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	13, 366
NmeAIII	GCCGAG	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	8 cut(s)	198, 201, 204, 231, 272, 305, 424, 441
PmaCI	CACGTG	1 cut(s)	184
PmlI	CACGTG	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	151, 359
PspCI	CACGTG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	2 cut(s)	151, 359
PspPI	GGNCC	2 cut(s)	142, 160
PstI	CTGCAG	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SatI	GCNGC	8 cut(s)	197, 200, 203, 230, 271, 304, 423, 440
Sau3AI	GATC	2 cut(s)	13, 366
Sau96I	GGNCC	2 cut(s)	142, 160
ScrFI	CCNGG	3 cut(s)	92, 153, 361
SduI	GDGCHC	1 cut(s)	490
SetI	ASST	9 cut(s)	23, 79, 154, 186, 216, 221, 262, 312, 496
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	290, 348
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	9 cut(s)	173, 191, 196, 202, 205, 229, 270, 303, 422
SspMI	CTAG	3 cut(s)	57, 525, 535
StyD4I	CCNGG	3 cut(s)	90, 151, 359
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	338, 354
TasI	AATT	1 cut(s)	137
TauI	GCSGC	6 cut(s)	199, 205, 232, 273, 306, 425
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	2 cut(s)	199, 439
TspDTI	ATGAA	2 cut(s)	134, 465
TspRI	CASTG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	3 cut(s)	57, 525, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.