pycom14g11210
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000212
Physical Location & Seq
Reverse (-)
14140950 .. 14142150
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g11210.2

Sequence Viewer

Length: 939 bp
ATGCATGGAATTCAAACTTTGGTTTGTATTGCAACTTCATGCGGAGTACTTGAACTCGCTTCTTTGGATGTGATCAAAGAAAATTGGGGTCTTGTGCAGCTATCAAAATCACTTTTCGAATCAGACAACACCACCACCACCACCGACAAAGTCTCAAAGCAGCTGAGCAGCAGTCTTGAGAATCATGTTCCTCTCTTAGAAAGTGGAATGTTTTCAGGAGCTGATAAAAACGAGTGGGCAACACAAGGTGGTACAAAAGAAGCAGCTCCTGTAAATGTAGGTGGATCATCATCAGACTCAGGACCTTCTGACTCTGTTGGAAACTTAACCTCTAAGAACACAGAGAACATTCGATTAAAAAAGAGAGGAAGATCATCAAACCGTGAAACAGGCAGACCCGAATCACCAATAAACCATGTTGAGGCAGAAAGACAAAGGCGAGAGAAGCTTAACTGTCGATTCTATGCCCTCCGCTCTGTCGTTCCCAATGTGTCCAGAATGGACAAAGCTTCTTTACTTTCTGATGCAGTTGTATACATCAATGAGCTGAAAGCAAGGGTTGGGCAATTGGAGTCCAAAATTCAAGCACAACTTCAAAAGCCCGGTGTTGATATTGGAGGCCAAACAAGCTCCATAGTTGATCATCACCAAACAAGGCCTAGGCTATCATCAAGTTACAATAATAGAGCATTTGGGGATATGGAAATGGATGTGAAGATTGTTGGCTCAGAAGCCATGTTACGAGTTCAGTGTCCGGATTGCGATTACCCTAATGCTAGATTGATGAACGCACTAAAAGACCTGGAGTTACAAGTTTATCATGCAAGCATATCAAGTGTTAAAGAGTTGATGCTTCAAGATGTTGTGGTAAGAGTGCCTCATGGATTCACAAGTGAGGAGGCCATGAGAACTGCTATTTTAAACAGATGGTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

313

Amino Acids

34.39

Weight (kDa)

7.05

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 474
AccI GTMKAC 1 cut(s) 534
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 2 cut(s) 42, 472
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 2 cut(s) 9, 579
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 3 cut(s) 48, 253, 932
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 5 cut(s) 14, 53, 584, 596, 857
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 8 cut(s) 100, 163, 221, 266, 448, 509, 547, 630
AluI AGCT 8 cut(s) 100, 163, 221, 266, 448, 509, 547, 630
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 292
AlwNI CAGNNNCTG 2 cut(s) 221, 269
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 3 cut(s) 619, 656, 900
ApeKI GCWGC 4 cut(s) 97, 160, 168, 263
ApoI RAATTY 2 cut(s) 9, 579
Asp700I GAANNNNTTC 1 cut(s) 211
AspA2I CCTAGG 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 2 cut(s) 396, 638
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 302
AvrII CCTAGG 1 cut(s) 659
BarI GAAGNNNNNNTAC 4 cut(s) 19, 51, 723, 755
BbvI GCAGC 4 cut(s) 109, 172, 180, 275
BccI CCATC 1 cut(s) 921
BciT130I CCWGG 1 cut(s) 803
BclI TGATCA 2 cut(s) 72, 640
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 3 cut(s) 660, 777, 937
BisI GCNGC 4 cut(s) 98, 161, 169, 264
BlnI CCTAGG 1 cut(s) 659
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 4 cut(s) 99, 162, 170, 265
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 603, 803
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 603, 803
BmsI GCATC 2 cut(s) 514, 840
BpmI CTGGAG 1 cut(s) 824
Bpu1102I GCTNAGC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 603
BsaBI GATNNNNATC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 659
BsaWI WCCGGW 1 cut(s) 754
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 1 cut(s) 659
BseGI GGATG 2 cut(s) 73, 715
BseJI GATNNNNATC 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 155, 312, 741
BseRI GAGGAG 1 cut(s) 911
BseXI GCAGC 4 cut(s) 109, 172, 180, 275
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 3 cut(s) 621, 658, 902
BsiSI CCGG 2 cut(s) 603, 755
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 3 cut(s) 621, 658, 902
Bsp119I TTCGAA 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 754
Bsp143I GATC 4 cut(s) 72, 284, 371, 640
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 2 cut(s) 42, 472
BspANI GGCC 3 cut(s) 621, 658, 902
BspCNI CTCAG 3 cut(s) 156, 311, 740
BspEI TCCGGA 1 cut(s) 754
BspPI GGATC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 659
BssMI GATC 4 cut(s) 72, 284, 371, 640
BssNAI GTATAC 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 659
Bst1107I GTATAC 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 2 cut(s) 383, 455
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 5 cut(s) 164, 196, 298, 333, 727
BstF5I GGATG 2 cut(s) 73, 715
BstKTI GATC 4 cut(s) 75, 287, 374, 643
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 4 cut(s) 72, 284, 371, 640
BstMWI GCNNNNNNNGC 2 cut(s) 445, 627
BstNI CCWGG 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 601, 801
BstV1I GCAGC 4 cut(s) 109, 172, 180, 275
BstZ17I GTATAC 1 cut(s) 535
BsuRI GGCC 3 cut(s) 621, 658, 902
BtsCI GGATG 2 cut(s) 73, 715
BtsIMutI CAGTG 1 cut(s) 755
Cac8I GCNNGC 1 cut(s) 826
CaiI CAGNNNCTG 2 cut(s) 221, 269
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 3 cut(s) 47, 252, 931
CviAII CATG 8 cut(s) 5, 39, 185, 416, 736, 821, 881, 904
CviQI GTAC 3 cut(s) 47, 252, 931
DdeI CTNAG 5 cut(s) 164, 196, 298, 333, 727
DpnI GATC 4 cut(s) 74, 286, 373, 642
DpnII GATC 4 cut(s) 72, 284, 371, 640
DraI TTTAAA 1 cut(s) 921
DraIII CACNNNGTG 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 1 cut(s) 659
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 8 cut(s) 8, 42, 188, 419, 739, 824, 884, 907
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 8 cut(s) 4, 38, 184, 415, 735, 820, 880, 903
FbaI TGATCA 2 cut(s) 72, 640
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 98, 161, 169, 264
FokI GGATG 2 cut(s) 80, 722
Fsp4HI GCNGC 4 cut(s) 98, 161, 169, 264
FspBI CTAG 3 cut(s) 660, 777, 937
GluI GCNGC 4 cut(s) 98, 161, 169, 264
GsuI CTGGAG 1 cut(s) 824
HaeIII GGCC 3 cut(s) 621, 658, 902
HapII CCGG 2 cut(s) 603, 755
Hin1II CATG 8 cut(s) 8, 42, 188, 419, 739, 824, 884, 907
HindIII AAGCTT 2 cut(s) 446, 507
HinfI GANTC 8 cut(s) 119, 181, 296, 311, 401, 459, 572, 885
HpaII CCGG 2 cut(s) 603, 755
HphI GGTGA 2 cut(s) 396, 638
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 5 cut(s) 124, 295, 310, 523, 730
Hpy188III TCNNGA 6 cut(s) 176, 216, 300, 495, 755, 857
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 2 cut(s) 383, 455
HpyCH4V TGCA 5 cut(s) 4, 32, 97, 527, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 627
HpyF3I CTNAG 5 cut(s) 164, 196, 298, 333, 727
Hsp92II CATG 8 cut(s) 8, 42, 188, 419, 739, 824, 884, 907
Kpn2I TCCGGA 1 cut(s) 754
Ksp22I TGATCA 2 cut(s) 72, 640
Kzo9I GATC 4 cut(s) 72, 284, 371, 640
LmnI GCTCC 3 cut(s) 218, 271, 635
LpnPI CCDG 9 cut(s) 201, 282, 285, 375, 508, 616, 768, 788, 815
Lsp1109I GCAGC 4 cut(s) 109, 172, 180, 275
LweI GCATC 2 cut(s) 514, 840
MaeI CTAG 3 cut(s) 660, 777, 937
MaeIII GTNAC 3 cut(s) 674, 738, 807
MalI GATC 4 cut(s) 74, 286, 373, 642
MbiI CCGCTC 1 cut(s) 474
MboI GATC 4 cut(s) 72, 284, 371, 640
MboII GAAGA 2 cut(s) 381, 727
MfeI CAATTG 1 cut(s) 566
MluCI AATT 4 cut(s) 9, 82, 566, 579
MlyI GAGTC 3 cut(s) 290, 305, 581
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 9 cut(s) 201, 340, 359, 415, 479, 611, 888, 889, 892
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 5 cut(s) 326, 356, 450, 840, 920
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 2 cut(s) 603, 755
MspR9I CCNGG 2 cut(s) 603, 803
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 803
MwoI GCNNNNNNNGC 2 cut(s) 445, 627
NciI CCSGG 1 cut(s) 603
NdeII GATC 4 cut(s) 72, 284, 371, 640
NlaIII CATG 8 cut(s) 8, 42, 188, 419, 739, 824, 884, 907
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 117
PceI AGGCCT 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 5 cut(s) 119, 181, 401, 459, 885
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 4 cut(s) 99, 162, 170, 265
PleI GAGTC 3 cut(s) 290, 305, 580
PpsI GAGTC 3 cut(s) 290, 305, 580
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspPI GGNCC 1 cut(s) 302
PspPPI RGGWCCY 1 cut(s) 302
PstNI CAGNNNCTG 2 cut(s) 221, 269
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 3 cut(s) 48, 253, 932
RsaNI GTAC 3 cut(s) 47, 252, 931
SaqAI TTAA 5 cut(s) 326, 356, 450, 840, 920
SatI GCNGC 4 cut(s) 98, 161, 169, 264
Sau3AI GATC 4 cut(s) 72, 284, 371, 640
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 3 cut(s) 290, 305, 581
ScrFI CCNGG 2 cut(s) 603, 803
SfaNI GCATC 2 cut(s) 514, 840
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 4 cut(s) 9, 82, 566, 579
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 2 cut(s) 42, 472
SspMI CTAG 3 cut(s) 660, 777, 937
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 2 cut(s) 601, 801
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 2 cut(s) 383, 455
TaqI TCGA 3 cut(s) 117, 352, 457
TasI AATT 4 cut(s) 9, 82, 566, 579
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 5 cut(s) 119, 181, 401, 459, 885
Tru1I TTAA 5 cut(s) 326, 356, 450, 840, 920
Tru9I TTAA 5 cut(s) 326, 356, 450, 840, 920
TscAI CASTG 1 cut(s) 755
TseI GCWGC 4 cut(s) 97, 160, 168, 263
TspDTI ATGAA 2 cut(s) 27, 800
TspRI CASTG 1 cut(s) 755
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 2 cut(s) 9, 579
XmaJI CCTAGG 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 3 cut(s) 660, 777, 937
ZrmI AGTACT 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.