Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004603.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

6455 .. 8284

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004603.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgatgaagggatcgattttcataccacatgcaaatcatcagtggccggaattcaatgatgaccgtcggagctccaaaaacttctcgtcatcgattcttcctccacagtcaacgattgaacgaactaccacaagaagtgtgatggcggcatcgagacgaagagaaaggcgccagtgcgcagtcgtggggtggccggacgctggagttgcaggaacttgcccaaaaaccgccttcggcttcgggacctcaatctggctgagcggggcccacgagcttcagttcaacaactgtgagagagccaaagaggcccaaatccaggggatcgagaccttaatctgcatcccaacttcctccggtgttcttgaaatgggttccttcggtttgatcagagagaactgggggttgatccagcaagccaagtcgttgttagggtcggatcagcccgacctagaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacctcggcatcatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

170

Amino Acids

18.93

Weight (kDa)

7.71

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	168
AccBSI	CCGCTC	2 cut(s)	261, 463
AciI	CCGC	4 cut(s)	146, 228, 261, 461
AclWI	GGATC	4 cut(s)	19, 329, 400, 444
AcoI	YGGCCR	2 cut(s)	44, 191
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	169
AfiI	CCNNNNNNNGG	3 cut(s)	200, 252, 316
AgsI	TTSAA	4 cut(s)	55, 119, 283, 365
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	72, 274
AluI	AGCT	2 cut(s)	72, 274
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	148, 320
AlwI	GGATC	4 cut(s)	19, 329, 400, 444
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	4 cut(s)	44, 191, 264, 306
ApaI	GGGCCC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	171, 179
AspS9I	GGNCC	4 cut(s)	243, 264, 265, 307
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	2 cut(s)	74, 268
BauI	CACGAG	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	148, 320
BfaI	CTAG	1 cut(s)	449
BfoI	RGCGCY	1 cut(s)	172
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	147
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	4 cut(s)	243, 264, 265, 307
BmiI	GGNNCC	5 cut(s)	170, 244, 265, 266, 373
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	158, 348
BmuI	ACTGGG	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	257
Bsa29I	ATCGAT	2 cut(s)	14, 92
BsaHI	GRCGYC	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	316, 499
BsaWI	WCCGGW	2 cut(s)	353, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 252, 316
Bse1I	ACTGG	2 cut(s)	172, 401
BseBI	CCWGG	1 cut(s)	317
BseCI	ATCGAT	2 cut(s)	14, 92
BseDI	CCNNGG	2 cut(s)	316, 499
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	200, 252, 316
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	172, 401
BseSI	GKGCMC	1 cut(s)	268
BshFI	GGCC	4 cut(s)	46, 193, 266, 308
BshNI	GGYRCC	1 cut(s)	168
BshVI	ATCGAT	2 cut(s)	14, 92
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	4 cut(s)	47, 194, 354, 478
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	200, 252, 316
BsmAI	GTCTC	2 cut(s)	148, 320
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	4 cut(s)	46, 193, 266, 308
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	464
Bsp120I	GGGCCC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	74, 268
Bsp143I	GATC	5 cut(s)	11, 321, 384, 405, 436
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	4 cut(s)	146, 228, 261, 461
BspANI	GGCC	4 cut(s)	46, 193, 266, 308
BspCNI	CTCAG	1 cut(s)	249
BspDI	ATCGAT	2 cut(s)	14, 92
BspLI	GGNNCC	5 cut(s)	170, 244, 265, 266, 373
BspPI	GGATC	4 cut(s)	19, 329, 400, 444
BspT107I	GGYRCC	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	2 cut(s)	261, 463
BsrI	ACTGG	2 cut(s)	172, 401
BssECI	CCNNGG	2 cut(s)	316, 499
BssMI	GATC	5 cut(s)	11, 321, 384, 405, 436
BssNI	GRCGYC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	3 cut(s)	65, 108, 290
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	171, 179
BstKTI	GATC	5 cut(s)	14, 324, 387, 408, 439
BstMAI	GTCTC	2 cut(s)	148, 320
BstMBI	GATC	5 cut(s)	11, 321, 384, 405, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 305
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	268
Bsu15I	ATCGAT	2 cut(s)	14, 92
BsuRI	GGCC	4 cut(s)	46, 193, 266, 308
BsuTUI	ATCGAT	2 cut(s)	14, 92
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	47, 179
Cac8I	GCNNGC	1 cut(s)	414
CfoI	GCGC	2 cut(s)	171, 179
Cfr13I	GGNCC	4 cut(s)	243, 264, 265, 307
ClaI	ATCGAT	2 cut(s)	14, 92
CseI	GACGC	1 cut(s)	206
CviAII	CATG	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	257
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	5 cut(s)	13, 323, 386, 407, 438
DpnII	GATC	5 cut(s)	11, 321, 384, 405, 436
EaeI	YGGCCR	2 cut(s)	44, 191
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	2 cut(s)	74, 268
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	72
EcoO109I	RGGNCCY	2 cut(s)	243, 264
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	315
EcoT38I	GRGCYC	2 cut(s)	74, 268
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	1 cut(s)	32
FaiI	YATR	2 cut(s)	23, 30
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	28
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	2 cut(s)	74, 268
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	449
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	2 cut(s)	170, 178
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	4 cut(s)	46, 193, 266, 308
HapII	CCGG	4 cut(s)	47, 194, 354, 478
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	171, 179
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	169, 177
HinP1I	GCGC	2 cut(s)	169, 177
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	4 cut(s)	47, 194, 354, 478
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	69, 389, 436
Hpy188III	TCNNGA	4 cut(s)	153, 241, 325, 362
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	241, 385
HpyCH4III	ACNGT	3 cut(s)	65, 108, 290
HpyCH4V	TGCA	3 cut(s)	32, 209, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 305
HpyF3I	CTNAG	1 cut(s)	257
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	2 cut(s)	169, 177
KasI	GGCGCC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	11, 321, 384, 405, 436
LmnI	GCTCC	2 cut(s)	69, 77
LweI	GCATC	2 cut(s)	158, 348
MaeI	CTAG	1 cut(s)	449
MalI	GATC	5 cut(s)	13, 323, 386, 407, 438
MbiI	CCGCTC	2 cut(s)	261, 463
MboI	GATC	5 cut(s)	11, 321, 384, 405, 436
MboII	GAAGA	2 cut(s)	89, 171
MhlI	GDGCHC	2 cut(s)	74, 268
MluCI	AATT	1 cut(s)	50
Mly113I	GGCGCC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	47, 414
MnlI	CCTC	5 cut(s)	111, 256, 298, 361, 509
MseI	TTAA	1 cut(s)	332
MspI	CCGG	4 cut(s)	47, 194, 354, 478
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	206, 305
NarI	GGCGCC	1 cut(s)	169
NdeII	GATC	5 cut(s)	11, 321, 384, 405, 436
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	5 cut(s)	170, 244, 265, 266, 373
NmeAIII	GCCGAG	1 cut(s)	480
NsbI	TGCGCA	1 cut(s)	178
NspI	RCATGY	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	5 cut(s)	170, 244, 265, 266, 373
PspOMI	GGGCCC	1 cut(s)	264
PspPI	GGNCC	4 cut(s)	243, 264, 265, 307
PspPPI	RGGWCCY	1 cut(s)	243
PspXI	VCTCGAGB	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	5 cut(s)	11, 321, 384, 405, 436
Sau96I	GGNCC	4 cut(s)	243, 264, 265, 307
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	74, 268
SetI	ASST	6 cut(s)	74, 248, 276, 332, 450, 501
SfaNI	GCATC	2 cut(s)	158, 348
SfoI	GGCGCC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	4 cut(s)	146, 228, 261, 461
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	65, 108, 290
TaqI	TCGA	5 cut(s)	14, 92, 152, 324, 465
TasI	AATT	1 cut(s)	50
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	2 cut(s)	47, 179
TspDTI	ATGAA	3 cut(s)	10, 20, 460
TspRI	CASTG	2 cut(s)	47, 179
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	464
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.