transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 362 |
| Acc36I | ACCTGC | 1 cut(s) | 362 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 617 |
| AccII | CGCG | 1 cut(s) | 629 |
| AciI | CCGC | 4 cut(s) | 176, 264, 320, 504 |
| AclWI | GGATC | 2 cut(s) | 335, 445 |
| AfaI | GTAC | 2 cut(s) | 432, 452 |
| AfeI | AGCGCT | 2 cut(s) | 157, 590 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 514, 617 |
| AgsI | TTSAA | 4 cut(s) | 54, 307, 514, 558 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 538, 570 |
| AluBI | AGCT | 4 cut(s) | 164, 334, 365, 389 |
| AluI | AGCT | 4 cut(s) | 164, 334, 365, 389 |
| Alw21I | GWGCWC | 1 cut(s) | 336 |
| Alw26I | GTCTC | 1 cut(s) | 598 |
| AlwI | GGATC | 2 cut(s) | 335, 445 |
| Aor51HI | AGCGCT | 2 cut(s) | 157, 590 |
| ApeKI | GCWGC | 3 cut(s) | 197, 272, 290 |
| AspLEI | GCGC | 2 cut(s) | 158, 591 |
| AspS9I | GGNCC | 2 cut(s) | 497, 524 |
| AsuHPI | GGTGA | 1 cut(s) | 632 |
| AvaII | GGWCC | 2 cut(s) | 497, 524 |
| BanII | GRGCYC | 1 cut(s) | 336 |
| BbsI | GAAGAC | 1 cut(s) | 630 |
| Bbv12I | GWGCWC | 1 cut(s) | 336 |
| BbvI | GCAGC | 3 cut(s) | 184, 259, 277 |
| BcoDI | GTCTC | 1 cut(s) | 598 |
| BfaI | CTAG | 1 cut(s) | 420 |
| BfoI | RGCGCY | 2 cut(s) | 159, 592 |
| BfuAI | ACCTGC | 1 cut(s) | 362 |
| BisI | GCNGC | 4 cut(s) | 198, 273, 291, 321 |
| BlsI | GCNGC | 4 cut(s) | 199, 274, 292, 322 |
| Bme18I | GGWCC | 2 cut(s) | 497, 524 |
| BmgT120I | GGNCC | 2 cut(s) | 497, 524 |
| BmsI | GCATC | 1 cut(s) | 231 |
| BpiI | GAAGAC | 1 cut(s) | 630 |
| BpmI | CTGGAG | 1 cut(s) | 405 |
| Bpu10I | CCTNAGC | 1 cut(s) | 294 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 514, 617 |
| Bse1I | ACTGG | 2 cut(s) | 388, 448 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseGI | GGATG | 4 cut(s) | 34, 69, 246, 260 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 514, 617 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseMII | CTCAG | 2 cut(s) | 336, 614 |
| BseNI | ACTGG | 2 cut(s) | 388, 448 |
| BseXI | GCAGC | 3 cut(s) | 184, 259, 277 |
| BseYI | CCCAGC | 1 cut(s) | 59 |
| Bsh1236I | CGCG | 1 cut(s) | 629 |
| BsiHKAI | GWGCWC | 1 cut(s) | 336 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 514, 617 |
| BsmAI | GTCTC | 1 cut(s) | 598 |
| BsmBI | CGTCTC | 1 cut(s) | 598 |
| BsmI | GAATGC | 1 cut(s) | 355 |
| Bsp1286I | GDGCHC | 1 cut(s) | 336 |
| Bsp1407I | TGTACA | 1 cut(s) | 430 |
| Bsp143I | GATC | 2 cut(s) | 340, 437 |
| BspACI | CCGC | 4 cut(s) | 176, 264, 320, 504 |
| BspCNI | CTCAG | 2 cut(s) | 337, 613 |
| BspFNI | CGCG | 1 cut(s) | 629 |
| BspMI | ACCTGC | 1 cut(s) | 362 |
| BspPI | GGATC | 2 cut(s) | 335, 445 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BsrGI | TGTACA | 1 cut(s) | 430 |
| BsrI | ACTGG | 2 cut(s) | 388, 448 |
| BssMI | GATC | 2 cut(s) | 340, 437 |
| Bst4CI | ACNGT | 2 cut(s) | 470, 616 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 241 |
| BstAUI | TGTACA | 1 cut(s) | 430 |
| BstDEI | CTNAG | 4 cut(s) | 152, 294, 345, 600 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 512 |
| BstF5I | GGATG | 4 cut(s) | 34, 69, 246, 260 |
| BstFNI | CGCG | 1 cut(s) | 629 |
| BstH2I | RGCGCY | 2 cut(s) | 159, 592 |
| BstHHI | GCGC | 2 cut(s) | 158, 591 |
| BstKTI | GATC | 2 cut(s) | 343, 440 |
| BstMAI | GTCTC | 1 cut(s) | 598 |
| BstMBI | GATC | 2 cut(s) | 340, 437 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 241, 250, 272 |
| BstUI | CGCG | 1 cut(s) | 629 |
| BstV1I | GCAGC | 3 cut(s) | 184, 259, 277 |
| BstV2I | GAAGAC | 1 cut(s) | 630 |
| BstX2I | RGATCY | 1 cut(s) | 437 |
| BstYI | RGATCY | 1 cut(s) | 437 |
| BtsCI | GGATG | 4 cut(s) | 34, 69, 246, 260 |
| BveI | ACCTGC | 1 cut(s) | 362 |
| CfoI | GCGC | 2 cut(s) | 158, 591 |
| Cfr13I | GGNCC | 2 cut(s) | 497, 524 |
| CseI | GACGC | 1 cut(s) | 635 |
| Csp6I | GTAC | 2 cut(s) | 431, 451 |
| CviAII | CATG | 3 cut(s) | 21, 25, 75 |
| CviJI | RGCY | 7 cut(s) | 83, 164, 182, 303, 334, 365, 389 |
| CviKI_1 | RGCY | 7 cut(s) | 83, 164, 182, 303, 334, 365, 389 |
| CviQI | GTAC | 2 cut(s) | 431, 451 |
| DdeI | CTNAG | 4 cut(s) | 152, 294, 345, 600 |
| DpnI | GATC | 2 cut(s) | 342, 439 |
| DpnII | GATC | 2 cut(s) | 340, 437 |
| EciI | GGCGGA | 1 cut(s) | 253 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco24I | GRGCYC | 1 cut(s) | 336 |
| Eco47I | GGWCC | 2 cut(s) | 497, 524 |
| Eco47III | AGCGCT | 2 cut(s) | 157, 590 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 512 |
| EcoO109I | RGGNCCY | 1 cut(s) | 497 |
| EcoT22I | ATGCAT | 1 cut(s) | 26 |
| EcoT38I | GRGCYC | 1 cut(s) | 336 |
| Esp3I | CGTCTC | 1 cut(s) | 598 |
| FaeI | CATG | 3 cut(s) | 24, 28, 78 |
| FaiI | YATR | 8 cut(s) | 8, 22, 26, 76, 108, 318, 356, 392 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 287, 319 |
| FatI | CATG | 3 cut(s) | 20, 24, 74 |
| FauI | CCCGC | 2 cut(s) | 169, 511 |
| Fnu4HI | GCNGC | 4 cut(s) | 198, 273, 291, 321 |
| FokI | GGATG | 4 cut(s) | 41, 76, 247, 253 |
| FriOI | GRGCYC | 1 cut(s) | 336 |
| Fsp4HI | GCNGC | 4 cut(s) | 198, 273, 291, 321 |
| FspBI | CTAG | 1 cut(s) | 420 |
| GlaI | GCGC | 2 cut(s) | 157, 590 |
| GluI | GCNGC | 4 cut(s) | 198, 273, 291, 321 |
| GsaI | CCCAGC | 1 cut(s) | 63 |
| GsuI | CTGGAG | 1 cut(s) | 405 |
| HaeII | RGCGCY | 2 cut(s) | 159, 592 |
| HgaI | GACGC | 1 cut(s) | 635 |
| HhaI | GCGC | 2 cut(s) | 158, 591 |
| Hin1II | CATG | 3 cut(s) | 24, 28, 78 |
| Hin6I | GCGC | 2 cut(s) | 156, 589 |
| HinP1I | GCGC | 2 cut(s) | 156, 589 |
| HincII | GTYRAC | 1 cut(s) | 466 |
| HindII | GTYRAC | 1 cut(s) | 466 |
| HinfI | GANTC | 2 cut(s) | 312, 397 |
| HphI | GGTGA | 1 cut(s) | 632 |
| Hpy166II | GTNNAC | 1 cut(s) | 466 |
| Hpy188I | TCNGA | 2 cut(s) | 477, 603 |
| Hpy188III | TCNNGA | 3 cut(s) | 143, 344, 575 |
| Hpy8I | GTNNAC | 1 cut(s) | 466 |
| HpyAV | CCTTC | 2 cut(s) | 488, 508 |
| HpyCH4III | ACNGT | 2 cut(s) | 470, 616 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 24, 89, 244, 371, 377 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 241, 250, 272 |
| HpyF3I | CTNAG | 4 cut(s) | 152, 294, 345, 600 |
| Hsp92II | CATG | 3 cut(s) | 24, 28, 78 |
| HspAI | GCGC | 2 cut(s) | 156, 589 |
| Kzo9I | GATC | 2 cut(s) | 340, 437 |
| LmnI | GCTCC | 2 cut(s) | 362, 386 |
| LpnPI | CCDG | 8 cut(s) | 45, 156, 357, 357, 369, 419, 461, 620 |
| Lsp1109I | GCAGC | 3 cut(s) | 184, 259, 277 |
| LweI | GCATC | 1 cut(s) | 231 |
| MaeI | CTAG | 1 cut(s) | 420 |
| MalI | GATC | 2 cut(s) | 342, 439 |
| MboI | GATC | 2 cut(s) | 340, 437 |
| MboII | GAAGA | 2 cut(s) | 503, 635 |
| MflI | RGATCY | 1 cut(s) | 437 |
| MhlI | GDGCHC | 1 cut(s) | 336 |
| MluCI | AATT | 6 cut(s) | 90, 125, 254, 357, 426, 459 |
| MlyI | GAGTC | 2 cut(s) | 306, 391 |
| MmeI | TCCRAC | 2 cut(s) | 79, 242 |
| MnlI | CCTC | 5 cut(s) | 182, 277, 292, 480, 510 |
| Mph1103I | ATGCAT | 1 cut(s) | 26 |
| MseI | TTAA | 3 cut(s) | 131, 380, 414 |
| Mva1269I | GAATGC | 1 cut(s) | 355 |
| MvnI | CGCG | 1 cut(s) | 629 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 241, 250, 272 |
| NdeII | GATC | 2 cut(s) | 340, 437 |
| NlaIII | CATG | 3 cut(s) | 24, 28, 78 |
| NsiI | ATGCAT | 1 cut(s) | 26 |
| PaqCI | CACCTGC | 1 cut(s) | 362 |
| PctI | GAATGC | 1 cut(s) | 355 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 617 |
| PkrI | GCNGC | 4 cut(s) | 199, 274, 292, 322 |
| PleI | GAGTC | 2 cut(s) | 306, 391 |
| PpsI | GAGTC | 2 cut(s) | 306, 391 |
| PpuMI | RGGWCCY | 1 cut(s) | 497 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| Psp5II | RGGWCCY | 1 cut(s) | 497 |
| PspFI | CCCAGC | 1 cut(s) | 59 |
| PspPI | GGNCC | 2 cut(s) | 497, 524 |
| PspPPI | RGGWCCY | 1 cut(s) | 497 |
| PsuI | RGATCY | 1 cut(s) | 437 |
| RsaI | GTAC | 2 cut(s) | 432, 452 |
| RsaNI | GTAC | 2 cut(s) | 431, 451 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SaqAI | TTAA | 3 cut(s) | 131, 380, 414 |
| SatI | GCNGC | 4 cut(s) | 198, 273, 291, 321 |
| Sau3AI | GATC | 2 cut(s) | 340, 437 |
| Sau96I | GGNCC | 2 cut(s) | 497, 524 |
| SchI | GAGTC | 2 cut(s) | 306, 391 |
| SduI | GDGCHC | 1 cut(s) | 336 |
| SetI | ASST | 7 cut(s) | 115, 166, 336, 367, 376, 391, 502 |
| SfaNI | GCATC | 1 cut(s) | 231 |
| SinI | GGWCC | 2 cut(s) | 497, 524 |
| Sse9I | AATT | 6 cut(s) | 90, 125, 254, 357, 426, 459 |
| SsiI | CCGC | 4 cut(s) | 176, 264, 320, 504 |
| SspMI | CTAG | 1 cut(s) | 420 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| TaaI | ACNGT | 2 cut(s) | 470, 616 |
| TaqI | TCGA | 1 cut(s) | 576 |
| TasI | AATT | 6 cut(s) | 90, 125, 254, 357, 426, 459 |
| TatI | WGTACW | 2 cut(s) | 430, 450 |
| TauI | GCSGC | 1 cut(s) | 323 |
| Tru1I | TTAA | 3 cut(s) | 131, 380, 414 |
| Tru9I | TTAA | 3 cut(s) | 131, 380, 414 |
| TseI | GCWGC | 3 cut(s) | 197, 272, 290 |
| TspDTI | ATGAA | 3 cut(s) | 9, 63, 123 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 617 |
| VpaK11BI | GGWCC | 2 cut(s) | 497, 524 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 512 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 534 |
| XspI | CTAG | 1 cut(s) | 420 |
| Zsp2I | ATGCAT | 1 cut(s) | 26 |