transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1382 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 445 |
| AccIII | TCCGGA | 1 cut(s) | 353 |
| AciI | CCGC | 3 cut(s) | 168, 171, 675 |
| AclWI | GGATC | 5 cut(s) | 387, 718, 739, 960, 1086 |
| AcoI | YGGCCR | 1 cut(s) | 172 |
| AcsI | RAATTY | 3 cut(s) | 359, 775, 1120 |
| AfaI | GTAC | 3 cut(s) | 398, 1254, 1394 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 215, 216, 445 |
| AflIII | ACRYGT | 1 cut(s) | 948 |
| AgsI | TTSAA | 9 cut(s) | 67, 110, 392, 479, 628, 910, 1115, 1125, 1319 |
| AjiI | CACGTC | 1 cut(s) | 877 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 203, 235 |
| AluBI | AGCT | 4 cut(s) | 650, 689, 845, 1006 |
| AluI | AGCT | 4 cut(s) | 650, 689, 845, 1006 |
| Alw21I | GWGCWC | 2 cut(s) | 525, 652 |
| Alw26I | GTCTC | 3 cut(s) | 36, 141, 1363 |
| Alw44I | GTGCAC | 1 cut(s) | 521 |
| AlwI | GGATC | 5 cut(s) | 387, 718, 739, 960, 1086 |
| Aor13HI | TCCGGA | 1 cut(s) | 353 |
| AoxI | GGCC | 3 cut(s) | 172, 591, 603 |
| ApaLI | GTGCAC | 1 cut(s) | 521 |
| ApeKI | GCWGC | 1 cut(s) | 845 |
| ApoI | RAATTY | 3 cut(s) | 359, 775, 1120 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 330, 362 |
| AseI | ATTAAT | 2 cut(s) | 195, 1107 |
| AspLEI | GCGC | 1 cut(s) | 75 |
| AsuHPI | GGTGA | 3 cut(s) | 21, 735, 772 |
| BaeGI | GKGCMC | 1 cut(s) | 525 |
| BanII | GRGCYC | 1 cut(s) | 652 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 445, 477 |
| BbsI | GAAGAC | 1 cut(s) | 829 |
| Bbv12I | GWGCWC | 2 cut(s) | 525, 652 |
| BbvI | GCAGC | 1 cut(s) | 832 |
| BccI | CCATC | 4 cut(s) | 58, 248, 835, 1383 |
| BceAI | ACGGC | 1 cut(s) | 582 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 454, 488 |
| BclI | TGATCA | 1 cut(s) | 498 |
| BcoDI | GTCTC | 3 cut(s) | 36, 141, 1363 |
| BfaI | CTAG | 3 cut(s) | 1239, 1265, 1373 |
| BfmI | CTRYAG | 2 cut(s) | 77, 318 |
| BfoI | RGCGCY | 1 cut(s) | 76 |
| BisI | GCNGC | 3 cut(s) | 169, 172, 846 |
| BlsI | GCNGC | 3 cut(s) | 170, 173, 847 |
| BmgBI | CACGTC | 1 cut(s) | 877 |
| BmiI | GGNNCC | 1 cut(s) | 618 |
| BmsI | GCATC | 1 cut(s) | 973 |
| BpiI | GAAGAC | 1 cut(s) | 829 |
| BpuEI | CTTGAG | 2 cut(s) | 636, 1387 |
| Bsa29I | ATCGAT | 1 cut(s) | 716 |
| BsaJI | CCNNGG | 1 cut(s) | 838 |
| BsaWI | WCCGGW | 2 cut(s) | 143, 353 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 348, 378 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 215, 216, 445 |
| Bse1I | ACTGG | 3 cut(s) | 486, 606, 618 |
| Bse3DI | GCAATG | 1 cut(s) | 971 |
| BseAI | TCCGGA | 1 cut(s) | 353 |
| BseCI | ATCGAT | 1 cut(s) | 716 |
| BseDI | CCNNGG | 1 cut(s) | 838 |
| BseGI | GGATG | 3 cut(s) | 499, 1174, 1394 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 215, 216, 445 |
| BseMI | GCAATG | 1 cut(s) | 971 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BseNI | ACTGG | 3 cut(s) | 486, 606, 618 |
| BseRI | GAGGAG | 2 cut(s) | 671, 1037 |
| BseSI | GKGCMC | 1 cut(s) | 525 |
| BseXI | GCAGC | 1 cut(s) | 832 |
| BshFI | GGCC | 3 cut(s) | 174, 593, 605 |
| BshVI | ATCGAT | 1 cut(s) | 716 |
| BsiHKAI | GWGCWC | 2 cut(s) | 525, 652 |
| BsiSI | CCGG | 2 cut(s) | 144, 354 |
| BslFI | GGGAC | 3 cut(s) | 351, 926, 1200 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 215, 216, 445 |
| BsmAI | GTCTC | 3 cut(s) | 36, 141, 1363 |
| BsmFI | GGGAC | 3 cut(s) | 351, 926, 1200 |
| BsmI | GAATGC | 1 cut(s) | 432 |
| BsnI | GGCC | 3 cut(s) | 174, 593, 605 |
| Bsp1286I | GDGCHC | 2 cut(s) | 525, 652 |
| Bsp13I | TCCGGA | 1 cut(s) | 353 |
| Bsp143I | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| Bsp19I | CCATGG | 1 cut(s) | 838 |
| BspACI | CCGC | 3 cut(s) | 168, 171, 675 |
| BspANI | GGCC | 3 cut(s) | 174, 593, 605 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspDI | ATCGAT | 1 cut(s) | 716 |
| BspEI | TCCGGA | 1 cut(s) | 353 |
| BspHI | TCATGA | 1 cut(s) | 382 |
| BspLI | GGNNCC | 1 cut(s) | 618 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspPI | GGATC | 5 cut(s) | 387, 718, 739, 960, 1086 |
| BsrDI | GCAATG | 1 cut(s) | 971 |
| BsrI | ACTGG | 3 cut(s) | 486, 606, 618 |
| BssECI | CCNNGG | 1 cut(s) | 838 |
| BssMI | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| BssT1I | CCWWGG | 1 cut(s) | 838 |
| Bst4CI | ACNGT | 2 cut(s) | 81, 639 |
| BstC8I | GCNNGC | 5 cut(s) | 372, 591, 595, 978, 1288 |
| BstDEI | CTNAG | 3 cut(s) | 273, 786, 869 |
| BstDSI | CCRYGG | 1 cut(s) | 838 |
| BstF5I | GGATG | 3 cut(s) | 499, 1174, 1394 |
| BstH2I | RGCGCY | 1 cut(s) | 76 |
| BstHHI | GCGC | 1 cut(s) | 75 |
| BstKTI | GATC | 7 cut(s) | 382, 501, 548, 713, 734, 968, 1081 |
| BstMAI | GTCTC | 3 cut(s) | 36, 141, 1363 |
| BstMBI | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| BstSFI | CTRYAG | 2 cut(s) | 77, 318 |
| BstSLI | GKGCMC | 1 cut(s) | 525 |
| BstV1I | GCAGC | 1 cut(s) | 832 |
| BstV2I | GAAGAC | 1 cut(s) | 829 |
| BstX2I | RGATCY | 1 cut(s) | 965 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 613 |
| BstYI | RGATCY | 1 cut(s) | 965 |
| Bsu15I | ATCGAT | 1 cut(s) | 716 |
| BsuRI | GGCC | 3 cut(s) | 174, 593, 605 |
| BsuTUI | ATCGAT | 1 cut(s) | 716 |
| BtgI | CCRYGG | 1 cut(s) | 838 |
| BtgZI | GCGATG | 1 cut(s) | 240 |
| BtrI | CACGTC | 1 cut(s) | 877 |
| BtsCI | GGATG | 3 cut(s) | 499, 1174, 1394 |
| BtsI | GCAGTG | 1 cut(s) | 993 |
| BtsIMutI | CAGTG | 2 cut(s) | 613, 993 |
| Cac8I | GCNNGC | 5 cut(s) | 372, 591, 595, 978, 1288 |
| CciI | TCATGA | 1 cut(s) | 382 |
| CfoI | GCGC | 1 cut(s) | 75 |
| ClaI | ATCGAT | 1 cut(s) | 716 |
| Csp6I | GTAC | 3 cut(s) | 397, 1253, 1393 |
| CviAII | CATG | 5 cut(s) | 162, 383, 431, 839, 1283 |
| CviQI | GTAC | 3 cut(s) | 397, 1253, 1393 |
| DdeI | CTNAG | 3 cut(s) | 273, 786, 869 |
| DpnI | GATC | 7 cut(s) | 381, 500, 547, 712, 733, 967, 1080 |
| DpnII | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| EaeI | YGGCCR | 1 cut(s) | 172 |
| Ecl136II | GAGCTC | 1 cut(s) | 650 |
| Eco130I | CCWWGG | 1 cut(s) | 838 |
| Eco24I | GRGCYC | 1 cut(s) | 652 |
| Eco53kI | GAGCTC | 1 cut(s) | 650 |
| EcoICRI | GAGCTC | 1 cut(s) | 650 |
| EcoT14I | CCWWGG | 1 cut(s) | 838 |
| EcoT22I | ATGCAT | 1 cut(s) | 432 |
| EcoT38I | GRGCYC | 1 cut(s) | 652 |
| ErhI | CCWWGG | 1 cut(s) | 838 |
| FaeI | CATG | 5 cut(s) | 165, 386, 434, 842, 1286 |
| FaqI | GGGAC | 3 cut(s) | 351, 926, 1200 |
| FatI | CATG | 5 cut(s) | 161, 382, 430, 838, 1282 |
| FauNDI | CATATG | 1 cut(s) | 1234 |
| FbaI | TGATCA | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 3 cut(s) | 169, 172, 846 |
| FokI | GGATG | 2 cut(s) | 506, 1181 |
| FriOI | GRGCYC | 1 cut(s) | 652 |
| Fsp4HI | GCNGC | 3 cut(s) | 169, 172, 846 |
| FspBI | CTAG | 3 cut(s) | 1239, 1265, 1373 |
| GlaI | GCGC | 1 cut(s) | 74 |
| GluI | GCNGC | 3 cut(s) | 169, 172, 846 |
| HaeII | RGCGCY | 1 cut(s) | 76 |
| HaeIII | GGCC | 3 cut(s) | 174, 593, 605 |
| HapII | CCGG | 2 cut(s) | 144, 354 |
| HhaI | GCGC | 1 cut(s) | 75 |
| Hin1II | CATG | 5 cut(s) | 165, 386, 434, 842, 1286 |
| Hin6I | GCGC | 1 cut(s) | 73 |
| HinP1I | GCGC | 1 cut(s) | 73 |
| HincII | GTYRAC | 1 cut(s) | 663 |
| HindII | GTYRAC | 1 cut(s) | 663 |
| HinfI | GANTC | 5 cut(s) | 269, 435, 752, 857, 1315 |
| HpaII | CCGG | 2 cut(s) | 144, 354 |
| HphI | GGTGA | 3 cut(s) | 21, 735, 772 |
| Hpy166II | GTNNAC | 4 cut(s) | 523, 611, 663, 1350 |
| Hpy188I | TCNGA | 3 cut(s) | 274, 545, 1192 |
| Hpy188III | TCNNGA | 6 cut(s) | 41, 354, 383, 653, 1112, 1223 |
| Hpy8I | GTNNAC | 4 cut(s) | 523, 611, 663, 1350 |
| Hpy99I | CGWCG | 4 cut(s) | 557, 560, 563, 881 |
| HpyAV | CCTTC | 1 cut(s) | 891 |
| HpyCH4III | ACNGT | 2 cut(s) | 81, 639 |
| HpyCH4IV | ACGT | 4 cut(s) | 757, 876, 948, 1092 |
| HpyCH4V | TGCA | 8 cut(s) | 320, 374, 430, 458, 523, 848, 986, 1286 |
| HpyF3I | CTNAG | 3 cut(s) | 273, 786, 869 |
| HpySE526I | ACGT | 4 cut(s) | 757, 876, 948, 1092 |
| Hsp92II | CATG | 5 cut(s) | 165, 386, 434, 842, 1286 |
| HspAI | GCGC | 1 cut(s) | 73 |
| Kpn2I | TCCGGA | 1 cut(s) | 353 |
| Ksp22I | TGATCA | 1 cut(s) | 498 |
| Kzo9I | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| LmnI | GCTCC | 2 cut(s) | 647, 842 |
| Lsp1109I | GCAGC | 1 cut(s) | 832 |
| LweI | GCATC | 1 cut(s) | 973 |
| MaeI | CTAG | 3 cut(s) | 1239, 1265, 1373 |
| MaeII | ACGT | 4 cut(s) | 757, 876, 948, 1092 |
| MaeIII | GTNAC | 7 cut(s) | 188, 200, 262, 534, 872, 1269, 1327 |
| MalI | GATC | 7 cut(s) | 381, 500, 547, 712, 733, 967, 1080 |
| MboI | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| MboII | GAAGA | 3 cut(s) | 18, 48, 834 |
| MfeI | CAATTG | 2 cut(s) | 392, 863 |
| MflI | RGATCY | 1 cut(s) | 965 |
| MhlI | GDGCHC | 2 cut(s) | 525, 652 |
| MlyI | GAGTC | 2 cut(s) | 263, 746 |
| MmeI | TCCRAC | 2 cut(s) | 751, 1008 |
| Mph1103I | ATGCAT | 1 cut(s) | 432 |
| MroI | TCCGGA | 1 cut(s) | 353 |
| MseI | TTAA | 6 cut(s) | 195, 302, 903, 1098, 1107, 1173 |
| MspI | CCGG | 2 cut(s) | 144, 354 |
| MunI | CAATTG | 2 cut(s) | 392, 863 |
| Mva1269I | GAATGC | 1 cut(s) | 432 |
| NcoI | CCATGG | 1 cut(s) | 838 |
| NdeI | CATATG | 1 cut(s) | 1234 |
| NdeII | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| NlaIII | CATG | 5 cut(s) | 165, 386, 434, 842, 1286 |
| NlaIV | GGNNCC | 1 cut(s) | 618 |
| NmuCI | GTSAC | 3 cut(s) | 534, 872, 1327 |
| NsiI | ATGCAT | 1 cut(s) | 432 |
| PagI | TCATGA | 1 cut(s) | 382 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 558 |
| PctI | GAATGC | 1 cut(s) | 432 |
| PfeI | GAWTC | 3 cut(s) | 435, 857, 1315 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 445 |
| PkrI | GCNGC | 3 cut(s) | 170, 173, 847 |
| PleI | GAGTC | 2 cut(s) | 263, 746 |
| PpsI | GAGTC | 2 cut(s) | 263, 746 |
| PshBI | ATTAAT | 2 cut(s) | 195, 1107 |
| PsiI | TTATAA | 1 cut(s) | 1382 |
| Psp124BI | GAGCTC | 1 cut(s) | 652 |
| PspN4I | GGNNCC | 1 cut(s) | 618 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| PsuI | RGATCY | 1 cut(s) | 965 |
| RsaI | GTAC | 3 cut(s) | 398, 1254, 1394 |
| RsaNI | GTAC | 3 cut(s) | 397, 1253, 1393 |
| SacI | GAGCTC | 1 cut(s) | 652 |
| SaqAI | TTAA | 6 cut(s) | 195, 302, 903, 1098, 1107, 1173 |
| SatI | GCNGC | 3 cut(s) | 169, 172, 846 |
| Sau3AI | GATC | 7 cut(s) | 379, 498, 545, 710, 731, 965, 1078 |
| SchI | GAGTC | 2 cut(s) | 263, 746 |
| SduI | GDGCHC | 2 cut(s) | 525, 652 |
| SfaNI | GCATC | 1 cut(s) | 973 |
| SfcI | CTRYAG | 2 cut(s) | 77, 318 |
| SmlI | CTYRAG | 2 cut(s) | 651, 1366 |
| SmoI | CTYRAG | 2 cut(s) | 651, 1366 |
| SsiI | CCGC | 3 cut(s) | 168, 171, 675 |
| SspMI | CTAG | 3 cut(s) | 1239, 1265, 1373 |
| SstI | GAGCTC | 1 cut(s) | 652 |
| StyI | CCWWGG | 1 cut(s) | 838 |
| TaaI | ACNGT | 2 cut(s) | 81, 639 |
| TaiI | ACGT | 4 cut(s) | 760, 879, 951, 1095 |
| TaqI | TCGA | 6 cut(s) | 40, 464, 716, 809, 879, 1204 |
| TatI | WGTACW | 1 cut(s) | 1252 |
| TauI | GCSGC | 2 cut(s) | 171, 174 |
| TfiI | GAWTC | 3 cut(s) | 435, 857, 1315 |
| Tru1I | TTAA | 6 cut(s) | 195, 302, 903, 1098, 1107, 1173 |
| Tru9I | TTAA | 6 cut(s) | 195, 302, 903, 1098, 1107, 1173 |
| TscAI | CASTG | 2 cut(s) | 613, 993 |
| TseFI | GTSAC | 3 cut(s) | 534, 872, 1327 |
| TseI | GCWGC | 1 cut(s) | 845 |
| Tsp45I | GTSAC | 3 cut(s) | 534, 872, 1327 |
| TspDTI | ATGAA | 4 cut(s) | 73, 1146, 1176, 1262 |
| TspGWI | ACGGA | 1 cut(s) | 920 |
| TspRI | CASTG | 2 cut(s) | 613, 993 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 445 |
| VneI | GTGCAC | 1 cut(s) | 521 |
| VspI | ATTAAT | 2 cut(s) | 195, 1107 |
| XapI | RAATTY | 3 cut(s) | 359, 775, 1120 |
| XspI | CTAG | 3 cut(s) | 1239, 1265, 1373 |
| Zsp2I | ATGCAT | 1 cut(s) | 432 |